Wall clock time and date at job start Mon Mar 30 2020 01:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86801 * 119.99865 * 2 1 4 4 H 1.48500 * 109.47122 * 239.99950 * 3 2 1 5 5 H 1.48497 * 109.47077 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46575 * 120.00275 * 3 2 1 7 7 C 1.40052 * 120.00085 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99990 * 179.97438 * 7 2 1 9 9 C 1.46373 * 120.00127 * 359.97438 * 7 2 1 10 10 O 1.21695 * 120.00028 * 0.02562 * 9 7 2 11 11 N 1.34779 * 120.00504 * 180.02562 * 9 7 2 12 12 C 1.46496 * 120.00069 * 180.02562 * 11 9 7 13 13 C 1.50707 * 109.46696 * 180.02562 * 12 11 9 14 14 C 1.38880 * 120.33422 * 90.00139 * 13 12 11 15 15 C 1.38305 * 118.50194 * 179.97438 * 14 13 12 16 16 C 1.39139 * 119.09902 * 0.02562 * 15 14 13 17 17 N 1.38993 * 119.70540 * 180.02562 * 16 15 14 18 18 C 1.48536 * 111.00115 * 62.60366 * 17 16 15 19 19 C 1.54940 * 103.22712 * 159.72435 * 18 17 16 20 20 C 1.54598 * 102.91922 * 322.58113 * 19 18 17 21 21 C 1.47898 * 110.99970 * 179.97438 * 17 16 15 22 22 N 1.32397 * 120.58601 * 0.02562 * 16 15 14 23 23 C 1.31977 * 121.62351 * 359.97438 * 22 16 15 24 24 H 0.96998 * 120.00526 * 359.97438 * 1 2 3 25 25 H 0.97000 * 119.99351 * 0.02562 * 11 9 7 26 26 H 1.08992 * 109.47276 * 60.00476 * 12 11 9 27 27 H 1.09003 * 109.47236 * 299.99616 * 12 11 9 28 28 H 1.07998 * 120.75276 * 0.24937 * 14 13 12 29 29 H 1.07999 * 120.44559 * 179.97438 * 15 14 13 30 30 H 1.09006 * 110.66304 * 278.14998 * 18 17 16 31 31 H 1.08997 * 110.66764 * 41.28333 * 18 17 16 32 32 H 1.08998 * 110.72061 * 204.22944 * 19 18 17 33 33 H 1.08995 * 110.87886 * 81.01145 * 19 18 17 34 34 H 1.08999 * 110.31025 * 263.04523 * 20 19 18 35 35 H 1.08997 * 110.30769 * 140.87521 * 20 19 18 36 36 H 1.09001 * 109.91911 * 333.50923 * 21 17 16 37 37 H 1.09003 * 109.91611 * 94.80580 * 21 17 16 38 38 H 1.08002 * 119.56941 * 180.02562 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0944 1.6964 -1.2125 5 1 1.2757 2.7464 0.0006 6 1 3.0944 1.6963 1.2125 7 6 2.0070 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2752 -2.4805 -0.0005 10 8 0.0582 -2.4806 -0.0005 11 7 1.9490 -3.6478 -0.0005 12 6 1.2165 -4.9164 -0.0011 13 6 2.1959 -6.0619 -0.0004 14 6 2.6507 -6.5950 1.1987 15 6 3.5487 -7.6460 1.1551 16 6 3.9639 -8.1305 -0.0813 17 7 4.8656 -9.1867 -0.1398 18 6 4.2914 -10.4113 0.4741 19 6 5.1522 -11.5484 -0.1315 20 6 5.3874 -11.0688 -1.5822 21 6 5.1723 -9.5447 -1.5416 22 7 3.5078 -7.5944 -1.2027 23 6 2.6505 -6.5909 -1.1913 24 1 -0.4851 0.8400 0.0004 25 1 2.9190 -3.6477 -0.0002 26 1 0.5903 -4.9740 -0.8913 27 1 0.5895 -4.9744 0.8887 28 1 2.3076 -6.2008 2.1438 29 1 3.9230 -8.0841 2.0685 30 1 4.3979 -10.3842 1.5586 31 1 3.2452 -10.5288 0.1920 32 1 4.6071 -12.4922 -0.1209 33 1 6.0983 -11.6450 0.4010 34 1 4.6680 -11.5342 -2.2559 35 1 6.4053 -11.2992 -1.8966 36 1 4.3374 -9.2701 -2.1862 37 1 6.0789 -9.0335 -1.8655 38 1 2.2997 -6.1791 -2.1260 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274161244.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:39 Heat of formation + Delta-G solvation = -16.738749 kcal Electronic energy + Delta-G solvation = -20204.226463 eV Core-core repulsion = 17045.486504 eV Total energy + Delta-G solvation = -3158.739959 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.81264 -39.71015 -38.99619 -35.76628 -34.57575 -33.42553 -33.38895 -30.76717 -29.89126 -28.54189 -26.30639 -24.78153 -23.52697 -22.01315 -21.66314 -21.55510 -19.37735 -18.59571 -17.74562 -17.49493 -16.70492 -16.59099 -16.05215 -15.67398 -15.46427 -15.35136 -15.05590 -14.65944 -14.32201 -14.13105 -13.75628 -13.54395 -13.34820 -13.13194 -13.02148 -12.72640 -12.65587 -12.51915 -12.24706 -12.10778 -12.05394 -11.46031 -11.00582 -10.92336 -10.80051 -10.43106 -9.91572 -9.51264 -9.15197 -8.28989 -6.86335 0.00997 0.25731 1.40493 1.43731 1.55540 2.24764 2.46511 2.47964 2.73588 3.31152 3.37656 3.59982 3.64968 3.75773 3.85193 3.98329 4.01879 4.08332 4.23754 4.33154 4.53242 4.56886 4.70607 4.78210 4.81022 4.87024 4.92451 4.99733 5.03190 5.13994 5.24263 5.31437 5.33898 5.47539 5.63501 5.86120 6.09949 6.17761 6.24975 6.86172 6.90512 7.51155 8.47369 8.66263 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.042445 B = 0.003033 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.525572 B = 9228.565256 C = 9427.895510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.029 3.971 3 Si 0.998 3.002 4 H -0.255 1.255 5 H -0.273 1.273 6 H -0.254 1.254 7 C -0.574 4.574 8 H 0.085 0.915 9 C 0.539 3.461 10 O -0.631 6.631 11 N -0.750 5.750 12 C 0.185 3.815 13 C -0.170 4.170 14 C -0.039 4.039 15 C -0.174 4.174 16 C 0.289 3.711 17 N -0.469 5.469 18 C 0.039 3.961 19 C -0.117 4.117 20 C -0.129 4.129 21 C 0.031 3.969 22 N -0.533 5.533 23 C 0.133 3.867 24 H 0.275 0.725 25 H 0.392 0.608 26 H 0.047 0.953 27 H 0.049 0.951 28 H 0.150 0.850 29 H 0.161 0.839 30 H 0.104 0.896 31 H 0.047 0.953 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.089 -21.368 1.042 24.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.186 4.186 3 Si 0.817 3.183 4 H -0.179 1.179 5 H -0.198 1.198 6 H -0.178 1.178 7 C -0.610 4.610 8 H 0.104 0.896 9 C 0.344 3.656 10 O -0.518 6.518 11 N -0.405 5.405 12 C 0.060 3.940 13 C -0.174 4.174 14 C -0.065 4.065 15 C -0.196 4.196 16 C 0.057 3.943 17 N -0.188 5.188 18 C -0.086 4.086 19 C -0.155 4.155 20 C -0.167 4.167 21 C -0.096 4.096 22 N -0.247 5.247 23 C -0.024 4.024 24 H 0.085 0.915 25 H 0.225 0.775 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.168 0.832 29 H 0.178 0.822 30 H 0.122 0.878 31 H 0.066 0.934 32 H 0.113 0.887 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 11.814 -21.530 0.515 24.564 hybrid contribution -0.562 1.159 0.217 1.306 sum 11.252 -20.371 0.733 23.284 Atomic orbital electron populations 1.70170 1.09481 1.29076 1.36327 1.26966 0.95539 1.04912 0.91191 0.85073 0.78211 0.74761 0.80257 1.17946 1.19798 1.17836 1.21390 0.94670 0.90112 1.54849 0.89646 1.18586 0.86812 0.84168 0.76057 1.90557 1.16093 1.87874 1.57294 1.45894 1.09108 1.04223 1.81236 1.19597 0.92283 0.81508 1.00580 1.20708 1.01947 0.99589 0.95116 1.21618 0.93343 0.93161 0.98407 1.21729 1.00431 0.99138 0.98306 1.20317 0.89722 0.94619 0.89602 1.62082 1.34122 1.05062 1.17533 1.23463 0.97174 0.86857 1.01085 1.22530 1.00672 0.97359 0.94909 1.22446 1.03377 0.92949 0.97910 1.22891 1.01907 0.96950 0.87858 1.67599 1.13192 1.12926 1.30984 1.22534 0.91232 0.90645 0.98000 0.91484 0.77467 0.93501 0.93301 0.83218 0.82158 0.87766 0.93444 0.88715 0.89597 0.90692 0.89568 0.91759 0.90885 0.82364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.56 11.83 21.84 0.26 -50.30 16 2 C 0.03 1.64 5.50 85.31 0.47 2.11 16 3 Si 1.00 41.20 29.56 68.60 2.03 43.23 16 4 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 5 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 6 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 7 C -0.57 -32.84 9.54 24.83 0.24 -32.60 16 8 H 0.09 4.40 7.85 -2.91 -0.02 4.38 16 9 C 0.54 31.55 7.75 86.36 0.67 32.22 16 10 O -0.63 -42.48 15.02 -4.33 -0.07 -42.55 16 11 N -0.75 -34.18 5.54 -471.14 -2.61 -36.80 16 12 C 0.19 7.22 5.82 85.64 0.50 7.71 16 13 C -0.17 -5.22 5.27 -19.76 -0.10 -5.32 16 14 C -0.04 -1.01 9.85 22.44 0.22 -0.79 16 15 C -0.17 -4.02 9.46 22.50 0.21 -3.81 16 16 C 0.29 7.43 6.21 133.07 0.83 8.25 16 17 N -0.47 -10.02 5.30 -689.39 -3.65 -13.67 16 18 C 0.04 0.59 6.05 86.65 0.52 1.12 16 19 C -0.12 -1.26 7.06 31.80 0.22 -1.04 16 20 C -0.13 -1.68 6.93 31.46 0.22 -1.46 16 21 C 0.03 0.62 6.35 86.44 0.55 1.17 16 22 N -0.53 -15.46 8.15 -193.27 -1.57 -17.03 16 23 C 0.13 3.98 10.85 84.62 0.92 4.89 16 24 H 0.28 15.34 8.29 -92.71 -0.77 14.57 16 25 H 0.39 15.98 8.44 -92.71 -0.78 15.20 16 26 H 0.05 1.93 8.09 -2.39 -0.02 1.91 16 27 H 0.05 1.99 8.09 -2.39 -0.02 1.97 16 28 H 0.15 3.49 8.06 -2.91 -0.02 3.46 16 29 H 0.16 2.79 8.05 -2.91 -0.02 2.76 16 30 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.05 0.79 8.00 -2.39 -0.02 0.77 16 32 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.06 1.53 6.50 -2.39 -0.02 1.52 16 37 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.16 4.51 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -76.30 321.62 0.13 -76.17 By element: Atomic # 1 Polarization: 28.21 SS G_CDS: 0.29 Total: 28.50 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: 5.46 Total: 12.45 kcal Atomic # 7 Polarization: -110.22 SS G_CDS: -7.58 Total: -117.80 kcal Atomic # 8 Polarization: -42.48 SS G_CDS: -0.07 Total: -42.55 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Total: -76.30 0.13 -76.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274161244.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.430 kcal (2) G-P(sol) polarization free energy of solvation -76.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds