Wall clock time and date at job start Mon Mar 30 2020 02:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86799 * 120.00163 * 2 1 4 4 H 1.48500 * 109.46886 * 240.00087 * 3 2 1 5 5 H 1.48498 * 109.47217 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47055 * 120.00165 * 3 2 1 7 7 C 1.38814 * 119.99582 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99679 * 196.28783 * 7 2 1 9 9 N 1.36931 * 120.00220 * 16.28108 * 7 2 1 10 10 C 1.46972 * 120.59495 * 211.70702 * 9 7 2 11 11 C 1.53364 * 108.63583 * 235.20559 * 10 9 7 12 12 N 1.46969 * 108.63896 * 310.57590 * 11 10 9 13 13 C 1.34772 * 120.59476 * 235.20262 * 12 11 10 14 14 O 1.21771 * 120.00118 * 5.27914 * 13 12 11 15 15 C 1.41518 * 119.99980 * 185.27128 * 13 12 11 16 16 C 1.35607 * 120.00165 * 183.93794 * 15 13 12 17 17 C 1.41676 * 120.00042 * 180.02562 * 16 15 13 18 18 C 1.38285 * 126.25978 * 179.97438 * 17 16 15 19 19 C 1.39793 * 107.07624 * 179.80070 * 18 17 16 20 20 C 1.35500 * 107.91065 * 0.38678 * 19 18 17 21 21 N 1.35753 * 108.90958 * 359.60620 * 20 19 18 22 22 H 0.97001 * 125.68980 * 180.24062 * 21 20 19 23 23 C 1.46970 * 118.80945 * 55.47847 * 12 11 10 24 24 C 1.46969 * 120.59588 * 31.69025 * 9 7 2 25 25 H 0.96996 * 119.99026 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.60469 * 115.46371 * 10 9 7 27 27 H 1.09001 * 109.74860 * 355.03982 * 10 9 7 28 28 H 1.08997 * 109.61078 * 190.83381 * 11 10 9 29 29 H 1.09004 * 109.61054 * 70.32103 * 11 10 9 30 30 H 1.08006 * 119.99465 * 3.93117 * 15 13 12 31 31 H 1.07993 * 120.00122 * 359.97438 * 16 15 13 32 32 H 1.07998 * 126.46113 * 0.04478 * 18 17 16 33 33 H 1.07997 * 126.03837 * 180.24055 * 19 18 17 34 34 H 1.08002 * 125.53988 * 179.88033 * 20 19 18 35 35 H 1.09004 * 109.61070 * 64.26493 * 23 12 11 36 36 H 1.08989 * 109.61038 * 184.78073 * 23 12 11 37 37 H 1.09004 * 109.60810 * 244.53954 * 24 9 7 38 38 H 1.08997 * 109.60548 * 5.04749 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0578 -1.2211 0.2618 9 7 1.3667 -2.3641 -0.3335 10 6 1.7671 -3.6414 0.2734 11 6 2.0931 -4.6358 -0.8476 12 7 0.9894 -4.6280 -1.8181 13 6 0.3561 -5.7717 -2.1458 14 8 0.6311 -6.8073 -1.5673 15 6 -0.6285 -5.7689 -3.1623 16 6 -1.3222 -6.9012 -3.4374 17 6 -2.3076 -6.8986 -4.4554 18 6 -3.0869 -7.9735 -4.8420 19 6 -3.9217 -7.5264 -5.8703 20 6 -3.6409 -6.2204 -6.0969 21 7 -2.6639 -5.8255 -5.2412 22 1 -2.2805 -4.9358 -5.1916 23 6 0.5928 -3.3517 -2.4293 24 6 0.2630 -2.3563 -1.3039 25 1 -0.4848 0.8401 -0.0004 26 1 0.9497 -4.0299 0.8808 27 1 2.6480 -3.4923 0.8979 28 1 2.2046 -5.6358 -0.4286 29 1 3.0177 -4.3388 -1.3428 30 1 -0.8276 -4.8649 -3.7188 31 1 -1.1229 -7.8052 -2.8812 32 1 -3.0589 -8.9694 -4.4252 33 1 -4.6584 -8.1182 -6.3933 34 1 -4.1200 -5.5941 -6.8350 35 1 1.4130 -2.9653 -3.0344 36 1 -0.2867 -3.5034 -3.0548 37 1 -0.6615 -2.6534 -0.8088 38 1 0.1516 -1.3563 -1.7230 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276350872.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:00 Heat of formation + Delta-G solvation = 62.646528 kcal Electronic energy + Delta-G solvation = -20739.082163 eV Core-core repulsion = 17583.784609 eV Total energy + Delta-G solvation = -3155.297555 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.24974 -39.68507 -36.85863 -33.86846 -33.83195 -31.41839 -31.22451 -30.23762 -28.61322 -26.86535 -24.30376 -23.30379 -22.48154 -21.02200 -20.45758 -19.93465 -18.41784 -17.85277 -16.95815 -16.00082 -15.56933 -14.85808 -14.72534 -14.38800 -14.09090 -13.91415 -13.67790 -13.58022 -13.35109 -13.25341 -12.54692 -12.43047 -12.28203 -12.12301 -11.48997 -11.33061 -10.83811 -10.78343 -10.52576 -10.30927 -10.27554 -10.09791 -9.87235 -9.41446 -9.14999 -8.61585 -8.26181 -7.73061 -6.69300 -5.89471 -3.36882 0.69498 2.41507 2.92811 3.06066 3.32010 3.37866 3.38762 3.54849 3.77472 4.41156 4.84884 4.85771 4.98522 5.17479 5.19400 5.28291 5.35434 5.48390 5.73614 5.83235 5.85827 5.90149 5.98098 6.07915 6.14216 6.21903 6.30998 6.35860 6.46005 6.75011 6.80464 6.85939 6.93405 7.19072 7.29830 7.37518 7.70060 7.94412 8.34586 8.60386 9.08831 9.70530 10.30219 11.18263 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.025581 B = 0.003925 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.306335 B = 7131.246662 C = 8002.331466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.007 3.993 3 Si 0.905 3.095 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.260 4.260 8 H 0.066 0.934 9 N -0.590 5.590 10 C 0.132 3.868 11 C 0.095 3.905 12 N -0.593 5.593 13 C 0.546 3.454 14 O -0.568 6.568 15 C -0.232 4.232 16 C 0.012 3.988 17 C 0.013 3.987 18 C -0.150 4.150 19 C -0.209 4.209 20 C 0.010 3.990 21 N -0.544 5.544 22 H 0.418 0.582 23 C 0.080 3.920 24 C 0.161 3.839 25 H 0.256 0.744 26 H 0.024 0.976 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.118 0.882 31 H 0.149 0.851 32 H 0.143 0.857 33 H 0.139 0.861 34 H 0.167 0.833 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.025 0.975 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.490 -10.412 -11.930 16.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.192 4.192 3 Si 0.734 3.266 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.389 4.389 8 H 0.083 0.917 9 N -0.313 5.313 10 C 0.005 3.995 11 C -0.029 4.029 12 N -0.324 5.324 13 C 0.338 3.662 14 O -0.451 6.451 15 C -0.253 4.253 16 C -0.009 4.009 17 C -0.098 4.098 18 C -0.175 4.175 19 C -0.233 4.233 20 C -0.125 4.125 21 N -0.138 5.138 22 H 0.255 0.745 23 C -0.045 4.045 24 C 0.034 3.966 25 H 0.066 0.934 26 H 0.042 0.958 27 H 0.085 0.915 28 H 0.101 0.899 29 H 0.080 0.920 30 H 0.136 0.864 31 H 0.166 0.834 32 H 0.161 0.839 33 H 0.157 0.843 34 H 0.184 0.816 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.043 0.957 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.367 -10.591 -11.575 16.582 hybrid contribution 0.457 1.563 -0.074 1.630 sum -4.909 -9.029 -11.649 15.534 Atomic orbital electron populations 1.70018 1.05359 1.25863 1.53216 1.25164 0.95299 0.98633 1.00151 0.86340 0.78930 0.83044 0.78262 1.20901 1.21574 1.20729 1.19137 0.92319 0.84497 1.42947 0.91654 1.43934 1.39127 1.02584 1.45653 1.21307 0.98534 0.86952 0.92743 1.22191 0.88276 1.01069 0.91342 1.47965 1.34585 1.07313 1.42576 1.16906 0.82273 0.83503 0.83488 1.90761 1.67229 1.31785 1.55359 1.21969 1.01590 0.99138 1.02633 1.20802 0.89558 0.98943 0.91563 1.18339 1.03466 0.88360 0.99589 1.21497 0.98201 0.98041 0.99748 1.20862 1.04682 0.94982 1.02780 1.22039 0.95055 0.97158 0.98274 1.42232 1.30978 1.11922 1.28679 0.74451 1.22815 0.99285 0.84495 0.97878 1.21190 0.89921 0.97444 0.88029 0.93433 0.95831 0.91525 0.89882 0.92028 0.86383 0.83388 0.83910 0.84336 0.81556 0.91858 0.91234 0.95703 0.88855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.31 11.39 55.49 0.63 -24.68 16 2 C 0.01 0.18 4.90 -17.43 -0.09 0.10 16 3 Si 0.90 20.97 29.58 -169.99 -5.03 15.94 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.26 -6.92 9.55 -15.06 -0.14 -7.06 16 8 H 0.07 1.71 7.88 -52.49 -0.41 1.30 16 9 N -0.59 -14.50 2.95 -171.76 -0.51 -15.01 16 10 C 0.13 2.82 6.67 -3.60 -0.02 2.80 16 11 C 0.10 1.81 6.60 -3.60 -0.02 1.79 16 12 N -0.59 -11.08 2.94 -175.66 -0.52 -11.60 16 13 C 0.55 9.94 7.45 -15.01 -0.11 9.83 16 14 O -0.57 -11.78 15.52 5.13 0.08 -11.70 16 15 C -0.23 -3.34 8.72 -39.27 -0.34 -3.68 16 16 C 0.01 0.16 9.40 -39.21 -0.37 -0.21 16 17 C 0.01 0.15 6.74 -83.90 -0.57 -0.42 16 18 C -0.15 -1.59 10.86 -38.98 -0.42 -2.02 16 19 C -0.21 -1.95 10.81 -39.98 -0.43 -2.38 16 20 C 0.01 0.08 11.90 -16.79 -0.20 -0.12 16 21 N -0.54 -5.22 5.94 -10.56 -0.06 -5.28 16 22 H 0.42 3.25 7.87 -40.82 -0.32 2.93 16 23 C 0.08 1.42 6.49 -3.36 -0.02 1.40 16 24 C 0.16 3.65 5.50 -3.36 -0.02 3.63 16 25 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 26 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.07 1.36 7.94 -51.93 -0.41 0.94 16 28 H 0.08 1.55 6.99 -51.93 -0.36 1.18 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.12 1.45 4.74 -52.48 -0.25 1.20 16 31 H 0.15 1.96 7.46 -52.49 -0.39 1.57 16 32 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 34 H 0.17 0.88 8.06 -52.49 -0.42 0.45 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.07 1.02 5.37 -51.94 -0.28 0.74 16 37 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.09 2.30 6.23 -51.93 -0.32 1.97 16 LS Contribution 314.78 15.07 4.74 4.74 Total: -1.00 -32.14 314.78 -8.27 -40.41 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -4.85 Total: 3.52 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -2.76 Total: 3.66 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: -0.45 Total: -56.57 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.08 Total: -11.70 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.14 -8.27 -40.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276350872.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.054 kcal (2) G-P(sol) polarization free energy of solvation -32.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds