Wall clock time and date at job start Mon Mar 30 2020 02:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86799 * 120.00163 * 2 1 4 4 H 1.48500 * 109.46886 * 240.00087 * 3 2 1 5 5 H 1.48498 * 109.47217 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47055 * 120.00165 * 3 2 1 7 7 C 1.38814 * 119.99582 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99679 * 196.28783 * 7 2 1 9 9 N 1.36931 * 120.00220 * 16.28108 * 7 2 1 10 10 C 1.46972 * 120.59495 * 211.70702 * 9 7 2 11 11 C 1.53364 * 108.63583 * 235.20559 * 10 9 7 12 12 N 1.46969 * 108.63896 * 310.57590 * 11 10 9 13 13 C 1.34772 * 120.59476 * 235.20262 * 12 11 10 14 14 O 1.21771 * 120.00118 * 5.27914 * 13 12 11 15 15 C 1.41518 * 119.99980 * 185.27128 * 13 12 11 16 16 C 1.35607 * 120.00165 * 183.93794 * 15 13 12 17 17 C 1.41676 * 120.00042 * 180.02562 * 16 15 13 18 18 C 1.38285 * 126.25978 * 179.97438 * 17 16 15 19 19 C 1.39793 * 107.07624 * 179.80070 * 18 17 16 20 20 C 1.35500 * 107.91065 * 0.38678 * 19 18 17 21 21 N 1.35753 * 108.90958 * 359.60620 * 20 19 18 22 22 H 0.97001 * 125.68980 * 180.24062 * 21 20 19 23 23 C 1.46970 * 118.80945 * 55.47847 * 12 11 10 24 24 C 1.46969 * 120.59588 * 31.69025 * 9 7 2 25 25 H 0.96996 * 119.99026 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.60469 * 115.46371 * 10 9 7 27 27 H 1.09001 * 109.74860 * 355.03982 * 10 9 7 28 28 H 1.08997 * 109.61078 * 190.83381 * 11 10 9 29 29 H 1.09004 * 109.61054 * 70.32103 * 11 10 9 30 30 H 1.08006 * 119.99465 * 3.93117 * 15 13 12 31 31 H 1.07993 * 120.00122 * 359.97438 * 16 15 13 32 32 H 1.07998 * 126.46113 * 0.04478 * 18 17 16 33 33 H 1.07997 * 126.03837 * 180.24055 * 19 18 17 34 34 H 1.08002 * 125.53988 * 179.88033 * 20 19 18 35 35 H 1.09004 * 109.61070 * 64.26493 * 23 12 11 36 36 H 1.08989 * 109.61038 * 184.78073 * 23 12 11 37 37 H 1.09004 * 109.60810 * 244.53954 * 24 9 7 38 38 H 1.08997 * 109.60548 * 5.04749 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0578 -1.2211 0.2618 9 7 1.3667 -2.3641 -0.3335 10 6 1.7671 -3.6414 0.2734 11 6 2.0931 -4.6358 -0.8476 12 7 0.9894 -4.6280 -1.8181 13 6 0.3561 -5.7717 -2.1458 14 8 0.6311 -6.8073 -1.5673 15 6 -0.6285 -5.7689 -3.1623 16 6 -1.3222 -6.9012 -3.4374 17 6 -2.3076 -6.8986 -4.4554 18 6 -3.0869 -7.9735 -4.8420 19 6 -3.9217 -7.5264 -5.8703 20 6 -3.6409 -6.2204 -6.0969 21 7 -2.6639 -5.8255 -5.2412 22 1 -2.2805 -4.9358 -5.1916 23 6 0.5928 -3.3517 -2.4293 24 6 0.2630 -2.3563 -1.3039 25 1 -0.4848 0.8401 -0.0004 26 1 0.9497 -4.0299 0.8808 27 1 2.6480 -3.4923 0.8979 28 1 2.2046 -5.6358 -0.4286 29 1 3.0177 -4.3388 -1.3428 30 1 -0.8276 -4.8649 -3.7188 31 1 -1.1229 -7.8052 -2.8812 32 1 -3.0589 -8.9694 -4.4252 33 1 -4.6584 -8.1182 -6.3933 34 1 -4.1200 -5.5941 -6.8350 35 1 1.4130 -2.9653 -3.0344 36 1 -0.2867 -3.5034 -3.0548 37 1 -0.6615 -2.6534 -0.8088 38 1 0.1516 -1.3563 -1.7230 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276350872.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:00 Heat of formation + Delta-G solvation = 42.703583 kcal Electronic energy + Delta-G solvation = -20739.946954 eV Core-core repulsion = 17583.784609 eV Total energy + Delta-G solvation = -3156.162346 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.03503 -41.09554 -38.50685 -35.60177 -34.92863 -33.22604 -31.98073 -31.91405 -29.72450 -28.46076 -25.83270 -24.86194 -23.94806 -22.17876 -21.36511 -21.09818 -19.87090 -18.96331 -18.44320 -17.47527 -17.05312 -16.59050 -16.23841 -15.52668 -15.33445 -15.18997 -15.17600 -14.91650 -14.77091 -14.50260 -14.01427 -13.50356 -13.31747 -13.20156 -13.15096 -12.80749 -12.61720 -12.53070 -12.26576 -12.05905 -11.91922 -11.69211 -11.30320 -10.89181 -10.60002 -9.89058 -9.82360 -8.70338 -8.54525 -7.90954 -5.43118 -0.32450 1.48823 1.49863 1.57298 1.57786 2.03870 2.13411 2.36354 2.49737 2.56803 3.23762 3.55058 3.73638 3.93029 4.20299 4.22168 4.33966 4.39432 4.40997 4.45469 4.50377 4.58660 4.65370 4.74549 4.80664 4.97514 5.01759 5.14251 5.19812 5.37182 5.37389 5.50243 5.61351 5.65197 5.96463 6.08633 6.34719 6.52270 6.62700 7.08856 7.20099 7.74893 8.31534 9.13948 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.025581 B = 0.003925 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.306335 B = 7131.246662 C = 8002.331466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.041 4.041 3 Si 0.971 3.029 4 H -0.274 1.274 5 H -0.293 1.293 6 H -0.278 1.278 7 C -0.272 4.272 8 H 0.067 0.933 9 N -0.608 5.608 10 C 0.132 3.868 11 C 0.105 3.895 12 N -0.602 5.602 13 C 0.545 3.455 14 O -0.603 6.603 15 C -0.266 4.266 16 C 0.044 3.956 17 C -0.026 4.026 18 C -0.147 4.147 19 C -0.227 4.227 20 C 0.031 3.969 21 N -0.542 5.542 22 H 0.426 0.574 23 C 0.096 3.904 24 C 0.167 3.833 25 H 0.253 0.747 26 H 0.005 0.995 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.139 0.861 31 H 0.140 0.860 32 H 0.153 0.847 33 H 0.159 0.841 34 H 0.204 0.796 35 H 0.071 0.929 36 H 0.105 0.895 37 H -0.003 1.003 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.109 -10.575 -14.238 18.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.238 4.238 3 Si 0.799 3.201 4 H -0.200 1.200 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.402 4.402 8 H 0.085 0.915 9 N -0.332 5.332 10 C 0.006 3.994 11 C -0.019 4.019 12 N -0.333 5.333 13 C 0.341 3.659 14 O -0.489 6.489 15 C -0.287 4.287 16 C 0.023 3.977 17 C -0.136 4.136 18 C -0.172 4.172 19 C -0.251 4.251 20 C -0.106 4.106 21 N -0.137 5.137 22 H 0.265 0.735 23 C -0.028 4.028 24 C 0.040 3.960 25 H 0.062 0.938 26 H 0.023 0.977 27 H 0.091 0.909 28 H 0.103 0.897 29 H 0.090 0.910 30 H 0.157 0.843 31 H 0.158 0.842 32 H 0.170 0.830 33 H 0.177 0.823 34 H 0.221 0.779 35 H 0.089 0.911 36 H 0.123 0.877 37 H 0.015 0.985 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.964 -10.765 -13.887 18.555 hybrid contribution 0.474 1.460 0.570 1.637 sum -5.490 -9.304 -13.318 17.149 Atomic orbital electron populations 1.70168 1.06742 1.26276 1.54501 1.25906 0.96028 1.01639 1.00205 0.85301 0.77559 0.78862 0.78420 1.19985 1.21916 1.20390 1.19459 0.92633 0.85528 1.42592 0.91522 1.44214 1.39342 1.03011 1.46596 1.21352 0.97988 0.86448 0.93612 1.21990 0.88980 1.00146 0.90774 1.48022 1.34722 1.07779 1.42782 1.17423 0.82236 0.82652 0.83636 1.90732 1.68433 1.32789 1.56920 1.21758 1.02636 1.00759 1.03535 1.20823 0.88333 0.97992 0.90511 1.18250 1.04682 0.89721 1.00902 1.21877 0.97513 0.98350 0.99488 1.21241 1.05227 0.95786 1.02822 1.22750 0.93245 0.97319 0.97242 1.42326 1.31026 1.11975 1.28331 0.73476 1.22609 1.01102 0.82920 0.96144 1.21036 0.88476 0.97608 0.88847 0.93823 0.97738 0.90894 0.89686 0.91014 0.84325 0.84218 0.82955 0.82291 0.77942 0.91054 0.87674 0.98493 0.91045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.37 11.39 21.65 0.25 -53.13 16 2 C -0.04 -2.24 4.90 84.86 0.42 -1.82 16 3 Si 0.97 43.25 29.58 68.60 2.03 45.28 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.27 -14.64 9.55 84.03 0.80 -13.84 16 8 H 0.07 3.49 7.88 -2.91 -0.02 3.47 16 9 N -0.61 -30.40 2.95 -697.33 -2.06 -32.46 16 10 C 0.13 5.79 6.67 86.41 0.58 6.37 16 11 C 0.11 4.01 6.60 86.41 0.57 4.58 16 12 N -0.60 -22.32 2.94 -827.84 -2.43 -24.76 16 13 C 0.55 19.77 7.45 85.05 0.63 20.40 16 14 O -0.60 -25.29 15.52 -4.58 -0.07 -25.36 16 15 C -0.27 -7.40 8.72 22.47 0.20 -7.21 16 16 C 0.04 1.11 9.40 22.51 0.21 1.33 16 17 C -0.03 -0.55 6.74 39.08 0.26 -0.29 16 18 C -0.15 -2.78 10.86 22.66 0.25 -2.53 16 19 C -0.23 -3.47 10.81 22.01 0.24 -3.23 16 20 C 0.03 0.40 11.90 83.45 0.99 1.39 16 21 N -0.54 -8.80 5.94 -187.33 -1.11 -9.92 16 22 H 0.43 5.37 7.87 -92.71 -0.73 4.64 16 23 C 0.10 3.36 6.49 86.56 0.56 3.93 16 24 C 0.17 7.70 5.50 86.56 0.48 8.17 16 25 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 26 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 27 H 0.07 3.02 7.94 -2.39 -0.02 3.00 16 28 H 0.08 3.19 6.99 -2.39 -0.02 3.18 16 29 H 0.07 2.57 8.14 -2.38 -0.02 2.55 16 30 H 0.14 3.13 4.74 -2.91 -0.01 3.11 16 31 H 0.14 3.68 7.46 -2.91 -0.02 3.66 16 32 H 0.15 2.45 8.06 -2.91 -0.02 2.42 16 33 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 34 H 0.20 1.08 8.06 -2.91 -0.02 1.06 16 35 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.11 2.91 5.37 -2.39 -0.01 2.90 16 37 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 38 H 0.07 3.60 6.23 -2.39 -0.01 3.58 16 Total: -1.00 -70.19 314.78 3.14 -67.06 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 0.35 Total: 16.04 kcal Atomic # 6 Polarization: 11.06 SS G_CDS: 6.18 Total: 17.24 kcal Atomic # 7 Polarization: -114.90 SS G_CDS: -5.36 Total: -120.26 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.07 Total: -25.36 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -70.19 3.14 -67.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276350872.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.760 kcal (2) G-P(sol) polarization free energy of solvation -70.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds