Wall clock time and date at job start Mon Mar 30 2020 01:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34230 * 117.00007 * 2 1 4 4 O 1.20818 * 120.00059 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99788 * 180.02562 * 3 2 1 6 6 H 1.09004 * 110.32537 * 30.38779 * 5 3 2 7 7 C 1.54905 * 110.45755 * 268.08794 * 5 3 2 8 8 C 1.55160 * 101.57977 * 204.10671 * 7 5 3 9 9 C 1.54333 * 103.02126 * 35.30767 * 8 7 5 10 10 H 1.08991 * 109.78329 * 97.49740 * 9 8 7 11 11 C 1.50701 * 109.98922 * 218.67016 * 9 8 7 12 12 C 1.38235 * 120.00344 * 77.59463 * 11 9 8 13 13 C 1.38234 * 119.99761 * 179.74237 * 12 11 9 14 14 C 1.38234 * 120.00484 * 0.55220 * 13 12 11 15 15 C 1.38245 * 119.99451 * 359.69849 * 14 13 12 16 16 C 1.38229 * 119.99926 * 0.02615 * 15 14 13 17 17 N 1.47025 * 107.26479 * 338.13918 * 9 8 7 18 18 C 1.36939 * 125.64877 * 178.85113 * 17 9 8 19 19 H 1.07993 * 119.99808 * 161.72833 * 18 17 9 20 20 C 1.38808 * 119.99636 * 342.00353 * 18 17 9 21 21 N 1.31618 * 120.00351 * 349.83830 * 20 18 17 22 22 Si 1.86799 * 119.99902 * 169.84160 * 20 18 17 23 23 H 1.48500 * 109.47094 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47405 * 119.99686 * 22 20 18 25 25 H 1.48503 * 109.47340 * 239.99859 * 22 20 18 26 26 H 1.09000 * 109.47242 * 59.99505 * 1 2 3 27 27 H 1.08997 * 109.47172 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47025 * 299.99899 * 1 2 3 29 29 H 1.08997 * 111.00721 * 322.17479 * 7 5 3 30 30 H 1.09002 * 111.00866 * 85.99929 * 7 5 3 31 31 H 1.08995 * 110.72226 * 153.86696 * 8 7 5 32 32 H 1.09004 * 110.71740 * 276.95826 * 8 7 5 33 33 H 1.07997 * 120.00069 * 359.97438 * 12 11 9 34 34 H 1.08003 * 120.00053 * 180.26934 * 13 12 11 35 35 H 1.07998 * 120.00444 * 179.72498 * 14 13 12 36 36 H 1.08002 * 119.99707 * 180.02562 * 15 14 13 37 37 H 1.08003 * 119.99976 * 179.97438 * 16 15 14 38 38 H 0.97001 * 120.00420 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9904 0.4142 -0.5180 7 6 4.1051 1.3512 1.4498 8 6 5.4798 2.0381 1.2356 9 6 5.2012 3.0201 0.0780 10 1 5.0070 4.0154 0.4773 11 6 6.3818 3.0614 -0.8578 12 6 6.5800 2.0384 -1.7661 13 6 7.6599 2.0790 -2.6280 14 6 8.5480 3.1370 -2.5740 15 6 8.3527 4.1575 -1.6621 16 6 7.2696 4.1196 -0.8041 17 7 4.0142 2.5274 -0.6361 18 6 3.4257 3.1292 -1.7162 19 1 2.7575 2.5658 -2.3505 20 6 3.6926 4.4617 -1.9990 21 7 4.3454 5.2014 -1.1279 22 14 3.1252 5.2050 -3.6161 23 1 2.4190 4.1716 -4.4152 24 1 2.2030 6.3368 -3.3441 25 1 4.3029 5.6975 -4.3749 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.4560 1.9632 2.0760 30 1 4.2276 0.3547 1.8741 31 1 5.7871 2.5741 2.1335 32 1 6.2352 1.3073 0.9469 33 1 5.8890 1.2092 -1.8049 34 1 7.8124 1.2819 -3.3407 35 1 9.3942 3.1665 -3.2444 36 1 9.0463 4.9842 -1.6201 37 1 7.1172 4.9167 -0.0913 38 1 4.5322 6.1325 -1.3257 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279108171.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:51 Heat of formation + Delta-G solvation = -27.807594 kcal Electronic energy + Delta-G solvation = -22113.459289 eV Core-core repulsion = 18921.946598 eV Total energy + Delta-G solvation = -3191.512691 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.85373 -38.66504 -36.91141 -35.46376 -32.61555 -31.05650 -30.01763 -29.45010 -28.17675 -26.58727 -24.59743 -22.39400 -21.60446 -21.32092 -19.79709 -19.31530 -17.30105 -16.91195 -16.08078 -15.63055 -15.28415 -14.89131 -14.47713 -14.10570 -13.83140 -13.46835 -12.99369 -12.70464 -12.53624 -12.42148 -12.22145 -11.79906 -11.66999 -11.43283 -11.18265 -11.07796 -10.83439 -10.79428 -10.29754 -10.21712 -10.10403 -10.04207 -9.90283 -9.70376 -9.40415 -8.73429 -8.00910 -7.65790 -6.90123 -5.71411 -3.16921 2.31321 2.32678 3.03978 3.32556 3.44522 3.48091 3.49148 4.46925 4.71307 5.24800 5.34512 5.37208 5.43399 5.48301 5.53074 5.65603 5.66577 5.72208 5.79074 5.84632 5.92310 5.95765 6.18832 6.33557 6.35797 6.44672 6.49747 6.60868 6.69819 6.89960 6.95995 7.04641 7.32591 7.37218 7.46447 7.68317 7.88868 7.95663 8.19969 8.62333 9.10568 9.73126 10.33184 11.33045 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.016139 B = 0.008163 C = 0.006357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.562019 B = 3429.446651 C = 4403.848217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.376 6.376 3 C 0.443 3.557 4 O -0.475 6.475 5 C 0.166 3.834 6 H 0.064 0.936 7 C -0.120 4.120 8 C -0.130 4.130 9 C 0.206 3.794 10 H 0.104 0.896 11 C -0.029 4.029 12 C -0.099 4.099 13 C -0.136 4.136 14 C -0.145 4.145 15 C -0.137 4.137 16 C -0.092 4.092 17 N -0.559 5.559 18 C -0.224 4.224 19 H 0.070 0.930 20 C 0.014 3.986 21 N -0.898 5.898 22 Si 0.905 3.095 23 H -0.280 1.280 24 H -0.290 1.290 25 H -0.289 1.289 26 H 0.056 0.944 27 H 0.090 0.910 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.113 0.887 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.114 0.886 38 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.964 -8.366 3.646 9.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.294 6.294 3 C 0.282 3.718 4 O -0.358 6.358 5 C 0.057 3.943 6 H 0.081 0.919 7 C -0.158 4.158 8 C -0.168 4.168 9 C 0.101 3.899 10 H 0.121 0.879 11 C -0.031 4.031 12 C -0.117 4.117 13 C -0.154 4.154 14 C -0.164 4.164 15 C -0.155 4.155 16 C -0.110 4.110 17 N -0.283 5.283 18 C -0.352 4.352 19 H 0.088 0.912 20 C -0.184 4.184 21 N -0.542 5.542 22 Si 0.735 3.265 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.216 1.216 26 H 0.075 0.925 27 H 0.109 0.891 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.131 0.869 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.132 0.868 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.690 -7.813 3.545 8.991 hybrid contribution -0.694 0.667 -1.158 1.505 sum 1.996 -7.146 2.388 7.794 Atomic orbital electron populations 1.23054 0.78388 1.02391 1.01994 1.86569 1.22036 1.35581 1.85171 1.25107 0.93015 0.80832 0.72824 1.90655 1.66436 1.36068 1.42621 1.21275 0.84660 0.93727 0.94610 0.91919 1.22706 0.97515 1.00594 0.95005 1.22783 0.95934 0.98853 0.99267 1.20201 0.83088 0.98321 0.88294 0.87878 1.20406 0.94048 0.92177 0.96456 1.20896 0.96063 0.99145 0.95637 1.20947 0.96155 0.98507 0.99795 1.20824 0.99824 0.95764 0.99962 1.20944 0.98706 0.98381 0.97490 1.20895 0.93752 0.97462 0.98929 1.44492 1.27240 1.23478 1.33064 1.18747 1.24185 0.92605 0.99652 0.91243 1.24766 1.00031 0.95453 0.98190 1.69807 1.44060 1.06761 1.33609 0.86160 0.77872 0.79088 0.83354 1.20533 1.21733 1.21596 0.92494 0.89149 0.92660 0.91011 0.90946 0.91209 0.91640 0.86881 0.87687 0.87848 0.87689 0.86802 0.93731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.56 101.05 1.07 1.58 16 2 O -0.38 -6.69 10.57 -39.26 -0.41 -7.11 16 3 C 0.44 9.32 6.72 36.01 0.24 9.57 16 4 O -0.48 -11.77 15.40 -18.74 -0.29 -12.06 16 5 C 0.17 3.35 3.72 -67.57 -0.25 3.09 16 6 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 7 C -0.12 -2.02 6.50 -24.58 -0.16 -2.18 16 8 C -0.13 -2.24 6.46 -24.89 -0.16 -2.40 16 9 C 0.21 4.51 2.32 -68.10 -0.16 4.36 16 10 H 0.10 2.61 6.21 -51.93 -0.32 2.29 16 11 C -0.03 -0.61 3.76 -104.62 -0.39 -1.01 16 12 C -0.10 -2.01 9.15 -39.58 -0.36 -2.37 16 13 C -0.14 -2.49 10.05 -39.58 -0.40 -2.89 16 14 C -0.15 -2.57 10.05 -39.58 -0.40 -2.97 16 15 C -0.14 -2.52 10.05 -39.58 -0.40 -2.92 16 16 C -0.09 -1.87 9.27 -39.58 -0.37 -2.24 16 17 N -0.56 -13.31 2.20 -157.74 -0.35 -13.66 16 18 C -0.22 -6.07 8.14 -15.06 -0.12 -6.20 16 19 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 20 C 0.01 0.39 5.14 -17.43 -0.09 0.30 16 21 N -0.90 -24.92 9.85 55.49 0.55 -24.37 16 22 Si 0.90 22.70 29.56 -169.99 -5.03 17.68 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 25 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 26 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 27 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.05 0.76 8.13 -51.93 -0.42 0.34 16 29 H 0.07 1.28 8.05 -51.93 -0.42 0.86 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.06 1.04 7.76 -51.93 -0.40 0.64 16 33 H 0.11 2.28 7.74 -52.49 -0.41 1.88 16 34 H 0.10 1.66 8.06 -52.48 -0.42 1.24 16 35 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.11 2.30 8.04 -52.48 -0.42 1.88 16 38 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 317.72 15.07 4.79 4.79 Total: -1.00 -30.90 317.72 -8.01 -38.91 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -5.32 Total: 2.09 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -1.95 Total: -6.27 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.20 Total: -38.03 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.70 Total: -19.17 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.03 Total: 17.68 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.90 -8.01 -38.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279108171.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.106 kcal (2) G-P(sol) polarization free energy of solvation -30.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds