Wall clock time and date at job start Mon Mar 30 2020 01:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34230 * 117.00007 * 2 1 4 4 O 1.20818 * 120.00059 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99788 * 180.02562 * 3 2 1 6 6 H 1.09004 * 110.32537 * 30.38779 * 5 3 2 7 7 C 1.54905 * 110.45755 * 268.08794 * 5 3 2 8 8 C 1.55160 * 101.57977 * 204.10671 * 7 5 3 9 9 C 1.54333 * 103.02126 * 35.30767 * 8 7 5 10 10 H 1.08991 * 109.78329 * 97.49740 * 9 8 7 11 11 C 1.50701 * 109.98922 * 218.67016 * 9 8 7 12 12 C 1.38235 * 120.00344 * 77.59463 * 11 9 8 13 13 C 1.38234 * 119.99761 * 179.74237 * 12 11 9 14 14 C 1.38234 * 120.00484 * 0.55220 * 13 12 11 15 15 C 1.38245 * 119.99451 * 359.69849 * 14 13 12 16 16 C 1.38229 * 119.99926 * 0.02615 * 15 14 13 17 17 N 1.47025 * 107.26479 * 338.13918 * 9 8 7 18 18 C 1.36939 * 125.64877 * 178.85113 * 17 9 8 19 19 H 1.07993 * 119.99808 * 161.72833 * 18 17 9 20 20 C 1.38808 * 119.99636 * 342.00353 * 18 17 9 21 21 N 1.31618 * 120.00351 * 349.83830 * 20 18 17 22 22 Si 1.86799 * 119.99902 * 169.84160 * 20 18 17 23 23 H 1.48500 * 109.47094 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47405 * 119.99686 * 22 20 18 25 25 H 1.48503 * 109.47340 * 239.99859 * 22 20 18 26 26 H 1.09000 * 109.47242 * 59.99505 * 1 2 3 27 27 H 1.08997 * 109.47172 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47025 * 299.99899 * 1 2 3 29 29 H 1.08997 * 111.00721 * 322.17479 * 7 5 3 30 30 H 1.09002 * 111.00866 * 85.99929 * 7 5 3 31 31 H 1.08995 * 110.72226 * 153.86696 * 8 7 5 32 32 H 1.09004 * 110.71740 * 276.95826 * 8 7 5 33 33 H 1.07997 * 120.00069 * 359.97438 * 12 11 9 34 34 H 1.08003 * 120.00053 * 180.26934 * 13 12 11 35 35 H 1.07998 * 120.00444 * 179.72498 * 14 13 12 36 36 H 1.08002 * 119.99707 * 180.02562 * 15 14 13 37 37 H 1.08003 * 119.99976 * 179.97438 * 16 15 14 38 38 H 0.97001 * 120.00420 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9904 0.4142 -0.5180 7 6 4.1051 1.3512 1.4498 8 6 5.4798 2.0381 1.2356 9 6 5.2012 3.0201 0.0780 10 1 5.0070 4.0154 0.4773 11 6 6.3818 3.0614 -0.8578 12 6 6.5800 2.0384 -1.7661 13 6 7.6599 2.0790 -2.6280 14 6 8.5480 3.1370 -2.5740 15 6 8.3527 4.1575 -1.6621 16 6 7.2696 4.1196 -0.8041 17 7 4.0142 2.5274 -0.6361 18 6 3.4257 3.1292 -1.7162 19 1 2.7575 2.5658 -2.3505 20 6 3.6926 4.4617 -1.9990 21 7 4.3454 5.2014 -1.1279 22 14 3.1252 5.2050 -3.6161 23 1 2.4190 4.1716 -4.4152 24 1 2.2030 6.3368 -3.3441 25 1 4.3029 5.6975 -4.3749 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.4560 1.9632 2.0760 30 1 4.2276 0.3547 1.8741 31 1 5.7871 2.5741 2.1335 32 1 6.2352 1.3073 0.9469 33 1 5.8890 1.2092 -1.8049 34 1 7.8124 1.2819 -3.3407 35 1 9.3942 3.1665 -3.2444 36 1 9.0463 4.9842 -1.6201 37 1 7.1172 4.9167 -0.0913 38 1 4.5322 6.1325 -1.3257 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279108171.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:50 Heat of formation + Delta-G solvation = -44.129323 kcal Electronic energy + Delta-G solvation = -22114.167053 eV Core-core repulsion = 18921.946598 eV Total energy + Delta-G solvation = -3192.220454 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.46143 -40.19053 -38.42590 -37.09351 -34.52279 -32.59257 -31.53125 -31.16880 -29.63250 -27.93276 -26.46773 -24.00983 -23.08251 -22.76496 -21.33570 -21.01594 -19.01141 -18.55141 -17.59555 -17.13842 -16.96116 -16.59984 -16.10519 -15.72227 -15.47434 -14.93617 -14.48758 -14.23868 -13.99388 -13.96191 -13.87851 -13.31941 -13.10415 -12.93825 -12.90953 -12.75721 -12.64865 -12.42946 -12.05806 -11.87247 -11.69352 -11.66476 -11.44038 -11.32722 -11.06743 -10.72851 -9.49249 -9.17429 -8.80494 -7.74522 -5.20779 0.83339 0.84491 1.37363 1.40198 1.41234 1.47736 1.91724 2.48156 3.19279 3.41559 3.66138 3.82951 3.99964 4.17754 4.29985 4.33214 4.34747 4.37174 4.38967 4.39978 4.52758 4.69793 4.81108 4.84075 4.97030 4.99896 5.10193 5.16697 5.28495 5.41899 5.48578 5.50281 5.58023 5.76936 5.86404 5.94381 6.22837 6.31813 6.49819 7.01100 7.12179 7.75355 8.38367 9.25229 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.016139 B = 0.008163 C = 0.006357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.562019 B = 3429.446651 C = 4403.848217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.369 6.369 3 C 0.447 3.553 4 O -0.523 6.523 5 C 0.155 3.845 6 H 0.084 0.916 7 C -0.107 4.107 8 C -0.119 4.119 9 C 0.204 3.796 10 H 0.060 0.940 11 C -0.045 4.045 12 C -0.115 4.115 13 C -0.137 4.137 14 C -0.145 4.145 15 C -0.139 4.139 16 C -0.112 4.112 17 N -0.576 5.576 18 C -0.219 4.219 19 H 0.052 0.948 20 C -0.031 4.031 21 N -0.910 5.910 22 Si 0.945 3.055 23 H -0.277 1.277 24 H -0.297 1.297 25 H -0.291 1.291 26 H 0.046 0.954 27 H 0.137 0.863 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.116 0.884 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.133 0.867 35 H 0.138 0.862 36 H 0.129 0.871 37 H 0.102 0.898 38 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.051 -10.510 3.544 11.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.286 6.286 3 C 0.289 3.711 4 O -0.410 6.410 5 C 0.047 3.953 6 H 0.101 0.899 7 C -0.145 4.145 8 C -0.157 4.157 9 C 0.098 3.902 10 H 0.078 0.922 11 C -0.047 4.047 12 C -0.134 4.134 13 C -0.155 4.155 14 C -0.163 4.163 15 C -0.157 4.157 16 C -0.131 4.131 17 N -0.300 5.300 18 C -0.348 4.348 19 H 0.070 0.930 20 C -0.227 4.227 21 N -0.556 5.556 22 Si 0.776 3.224 23 H -0.202 1.202 24 H -0.225 1.225 25 H -0.218 1.218 26 H 0.064 0.936 27 H 0.155 0.845 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.134 0.866 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.127 0.873 34 H 0.150 0.850 35 H 0.155 0.845 36 H 0.147 0.853 37 H 0.120 0.880 38 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 3.777 -10.010 3.454 11.242 hybrid contribution -1.088 1.219 -1.121 1.981 sum 2.689 -8.791 2.333 9.484 Atomic orbital electron populations 1.23420 0.76032 1.05314 1.01644 1.86527 1.24214 1.33489 1.84341 1.25168 0.93457 0.80951 0.71523 1.90641 1.67476 1.37760 1.45075 1.21544 0.84381 0.92679 0.96687 0.89890 1.22703 0.96484 1.02689 0.92658 1.22725 0.96622 0.98304 0.98023 1.20081 0.82899 0.97494 0.89693 0.92211 1.20391 0.94189 0.93035 0.97052 1.20954 0.97052 0.99039 0.96316 1.21293 0.95300 0.99425 0.99452 1.21224 1.00465 0.94825 0.99741 1.21262 0.98259 0.99380 0.96828 1.20947 0.94980 0.97293 0.99904 1.44559 1.28186 1.24287 1.32931 1.18680 1.23133 0.92491 1.00532 0.93009 1.25252 1.01218 0.96081 1.00194 1.69989 1.45223 1.06231 1.34199 0.85516 0.77209 0.78243 0.81451 1.20218 1.22463 1.21791 0.93553 0.84528 0.92444 0.92387 0.86575 0.89626 0.89720 0.87300 0.84950 0.84466 0.85335 0.87999 0.94630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 10.56 113.37 1.20 1.97 16 2 O -0.37 -12.48 10.57 -51.41 -0.54 -13.03 16 3 C 0.45 18.63 6.72 71.24 0.48 19.10 16 4 O -0.52 -26.37 15.40 21.99 0.34 -26.04 16 5 C 0.16 6.09 3.72 44.72 0.17 6.26 16 6 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 7 C -0.11 -3.39 6.50 31.99 0.21 -3.19 16 8 C -0.12 -3.91 6.46 31.79 0.21 -3.70 16 9 C 0.20 9.01 2.32 44.60 0.10 9.11 16 10 H 0.06 3.17 6.21 -2.39 -0.01 3.15 16 11 C -0.04 -1.91 3.76 -19.86 -0.07 -1.98 16 12 C -0.12 -4.56 9.15 22.27 0.20 -4.35 16 13 C -0.14 -4.69 10.05 22.27 0.22 -4.47 16 14 C -0.14 -4.70 10.05 22.27 0.22 -4.48 16 15 C -0.14 -4.91 10.05 22.27 0.22 -4.69 16 16 C -0.11 -4.61 9.27 22.27 0.21 -4.41 16 17 N -0.58 -27.70 2.20 -652.99 -1.44 -29.14 16 18 C -0.22 -12.15 8.14 84.03 0.68 -11.46 16 19 H 0.05 2.99 7.80 -2.91 -0.02 2.97 16 20 C -0.03 -1.76 5.14 84.86 0.44 -1.33 16 21 N -0.91 -52.33 9.85 21.65 0.21 -52.12 16 22 Si 0.95 47.59 29.56 68.60 2.03 49.62 16 23 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 24 H -0.30 -15.13 7.11 99.48 0.71 -14.42 16 25 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 26 H 0.05 1.33 8.13 -2.39 -0.02 1.31 16 27 H 0.14 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.06 1.50 8.13 -2.39 -0.02 1.49 16 29 H 0.06 2.00 8.05 -2.39 -0.02 1.98 16 30 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 31 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.08 2.47 7.76 -2.38 -0.02 2.45 16 33 H 0.11 4.30 7.74 -2.91 -0.02 4.27 16 34 H 0.13 3.73 8.06 -2.91 -0.02 3.71 16 35 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 36 H 0.13 3.82 8.06 -2.91 -0.02 3.80 16 37 H 0.10 4.29 8.04 -2.91 -0.02 4.27 16 38 H 0.24 13.91 8.31 -92.71 -0.77 13.14 16 Total: -1.00 -69.17 317.72 6.13 -63.04 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 1.04 Total: 15.27 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: 4.49 Total: -7.61 kcal Atomic # 7 Polarization: -80.04 SS G_CDS: -1.23 Total: -81.26 kcal Atomic # 8 Polarization: -38.86 SS G_CDS: -0.20 Total: -39.06 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.62 kcal Total: -69.17 6.13 -63.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279108171.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.912 kcal (2) G-P(sol) polarization free energy of solvation -69.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds