Wall clock time and date at job start Mon Mar 30 2020 01:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42904 * 114.00317 * 2 1 4 4 H 1.08998 * 109.46578 * 34.68035 * 3 2 1 5 5 C 1.50699 * 109.47065 * 274.68660 * 3 2 1 6 6 O 1.21288 * 119.99915 * 359.97438 * 5 3 2 7 7 N 1.34780 * 119.99982 * 179.97438 * 5 3 2 8 8 C 1.39234 * 119.99817 * 183.98088 * 7 5 3 9 9 C 1.39482 * 119.83831 * 324.59927 * 8 7 5 10 10 C 1.36372 * 120.17056 * 180.29789 * 9 8 7 11 11 C 1.40874 * 119.82713 * 359.47695 * 10 9 8 12 12 C 1.41153 * 120.16319 * 180.25231 * 11 10 9 13 13 H 1.08000 * 120.00220 * 214.23220 * 12 11 10 14 14 C 1.39906 * 120.00235 * 34.22585 * 12 11 10 15 15 N 1.30875 * 119.99948 * 5.72326 * 14 12 11 16 16 Si 1.86793 * 120.00156 * 185.72308 * 14 12 11 17 17 H 1.48494 * 109.47496 * 60.00233 * 16 14 12 18 18 H 1.48505 * 109.47099 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47136 * 300.00125 * 16 14 12 20 20 C 1.40865 * 119.67199 * 0.52095 * 11 10 9 21 21 C 1.36373 * 119.82798 * 359.72835 * 20 11 10 22 22 C 1.52995 * 109.47469 * 154.68224 * 3 2 1 23 23 C 1.52996 * 117.49804 * 3.75158 * 22 3 2 24 24 C 1.53000 * 117.49945 * 295.08786 * 22 3 2 25 25 H 1.08997 * 109.47815 * 304.99043 * 1 2 3 26 26 H 1.09003 * 109.46926 * 64.98695 * 1 2 3 27 27 H 1.09001 * 109.47502 * 184.98673 * 1 2 3 28 28 H 0.96999 * 119.99838 * 3.98566 * 7 5 3 29 29 H 1.07999 * 119.91293 * 0.02562 * 9 8 7 30 30 H 1.07997 * 120.08549 * 179.70225 * 10 9 8 31 31 H 0.96997 * 120.00300 * 179.97438 * 15 14 12 32 32 H 1.08004 * 120.08475 * 179.71289 * 20 11 10 33 33 H 1.08001 * 119.91553 * 180.02562 * 21 20 11 34 34 H 1.09002 * 115.54620 * 149.41601 * 22 3 2 35 35 H 1.09000 * 117.50146 * 359.97438 * 23 22 3 36 36 H 1.09003 * 117.50449 * 145.02143 * 23 22 3 37 37 H 1.08997 * 117.49550 * 214.97777 * 24 22 3 38 38 H 1.08999 * 117.49946 * 0.02562 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3860 1.9811 0.5847 5 6 2.1085 1.8116 -1.4161 6 8 1.7195 1.1220 -2.3349 7 7 2.6287 3.0305 -1.6615 8 6 2.6437 3.5323 -2.9601 9 6 2.8473 2.6681 -4.0358 10 6 2.8693 3.1532 -5.3102 11 6 2.6747 4.5295 -5.5394 12 6 2.6908 5.0385 -6.8559 13 1 3.0871 6.0244 -7.0489 14 6 2.1936 4.2657 -7.9108 15 7 1.6120 3.1193 -7.6648 16 14 2.3597 4.8699 -9.6705 17 1 3.7970 5.0446 -10.0003 18 1 1.7567 3.8758 -10.5943 19 1 1.6569 6.1700 -9.8159 20 6 2.4696 5.3961 -4.4480 21 6 2.4553 4.8970 -3.1789 22 6 3.4088 1.2410 0.6168 23 6 3.9428 -0.1365 1.0144 24 6 3.5122 0.8589 2.0948 25 1 -0.3634 0.5893 0.8418 26 1 -0.3633 0.4345 -0.9313 27 1 -0.3634 -1.0238 0.0893 28 1 2.9927 3.5580 -0.9334 29 1 2.9923 1.6126 -3.8588 30 1 3.0319 2.4835 -6.1417 31 1 1.2669 2.5837 -8.3961 32 1 2.3244 6.4531 -4.6157 33 1 2.2978 5.5600 -2.3411 34 1 4.1256 1.9671 0.2333 35 1 3.2975 -0.9969 0.8370 36 1 5.0109 -0.3166 0.8931 37 1 4.2973 1.3334 2.6834 38 1 2.5839 0.6530 2.6275 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279796312.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:57 Heat of formation + Delta-G solvation = -31.763964 kcal Electronic energy + Delta-G solvation = -20763.875315 eV Core-core repulsion = 17572.191063 eV Total energy + Delta-G solvation = -3191.684252 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.12700 -38.27237 -36.92345 -36.16870 -34.35545 -32.89840 -29.78956 -29.41659 -28.25070 -26.25104 -24.62817 -22.46145 -21.79549 -21.25556 -20.78406 -19.44155 -17.60516 -17.26325 -16.71087 -16.31774 -15.61157 -15.25630 -14.86531 -14.56279 -14.14573 -13.88675 -13.45082 -13.06545 -12.95717 -12.57366 -12.07384 -11.83466 -11.66207 -11.52273 -11.49104 -11.41965 -11.11213 -10.94551 -10.64128 -10.51917 -10.39386 -10.24699 -9.88878 -9.77322 -9.29515 -8.89981 -8.61686 -7.52881 -6.90334 -6.62914 -4.30817 2.54855 3.00112 3.08567 3.11020 3.13266 3.30543 3.39577 3.79398 3.86541 3.99320 4.54952 4.70773 4.77681 4.81346 5.12007 5.19182 5.23926 5.38265 5.51493 5.53023 5.67801 5.75194 5.79336 5.97164 6.13087 6.17236 6.39218 6.79250 6.92392 7.04355 7.06037 7.19922 7.30037 7.61410 7.68359 7.95691 8.08679 8.20601 8.32690 8.65464 8.77356 8.92783 9.01346 10.32002 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.033614 B = 0.003810 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.792339 B = 7348.024199 C = 7681.918308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.106 3.894 4 H 0.086 0.914 5 C 0.478 3.522 6 O -0.512 6.512 7 N -0.651 5.651 8 C 0.002 3.998 9 C -0.090 4.090 10 C -0.143 4.143 11 C 0.107 3.893 12 C -0.467 4.467 13 H 0.076 0.924 14 C 0.072 3.928 15 N -0.804 5.804 16 Si 0.913 3.087 17 H -0.265 1.265 18 H -0.279 1.279 19 H -0.267 1.267 20 C -0.207 4.207 21 C -0.111 4.111 22 C -0.160 4.160 23 C -0.157 4.157 24 C -0.172 4.172 25 H 0.038 0.962 26 H 0.051 0.949 27 H 0.087 0.913 28 H 0.394 0.606 29 H 0.107 0.893 30 H 0.119 0.881 31 H 0.280 0.720 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.119 0.881 35 H 0.108 0.892 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.357 -2.798 15.491 15.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.274 6.274 3 C 0.044 3.956 4 H 0.104 0.896 5 C 0.263 3.737 6 O -0.387 6.387 7 N -0.296 5.296 8 C -0.090 4.090 9 C -0.110 4.110 10 C -0.163 4.163 11 C 0.104 3.896 12 C -0.497 4.497 13 H 0.094 0.906 14 C -0.145 4.145 15 N -0.431 5.431 16 Si 0.738 3.262 17 H -0.190 1.190 18 H -0.204 1.204 19 H -0.191 1.191 20 C -0.227 4.227 21 C -0.131 4.131 22 C -0.178 4.178 23 C -0.194 4.194 24 C -0.209 4.209 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.106 0.894 28 H 0.227 0.773 29 H 0.125 0.875 30 H 0.137 0.863 31 H 0.091 0.909 32 H 0.115 0.885 33 H 0.108 0.892 34 H 0.137 0.863 35 H 0.126 0.874 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.025 -3.708 14.721 15.216 hybrid contribution -0.176 0.810 -0.516 0.977 sum 0.849 -2.898 14.205 14.522 Atomic orbital electron populations 1.22853 0.80620 1.02786 1.00518 1.87925 1.20060 1.24949 1.94482 1.21430 0.94699 0.86482 0.92944 0.89619 1.21162 0.78700 0.82327 0.91473 1.90723 1.47097 1.55621 1.45268 1.43021 1.59588 1.17962 1.09020 1.17257 1.16327 0.92757 0.82693 1.20591 0.99950 0.98170 0.92327 1.21046 1.03978 0.96477 0.94823 1.17683 0.87620 0.91650 0.92616 1.19455 1.36722 1.02124 0.91440 0.90597 1.25881 0.93098 0.94205 1.01273 1.69800 1.28053 1.10898 1.34325 0.86304 0.79493 0.79261 0.81190 1.18987 1.20412 1.19149 1.20663 1.11089 0.98710 0.92202 1.20083 1.03547 0.92864 0.96590 1.22288 0.95786 1.01796 0.97980 1.22880 1.01302 0.93549 1.01705 1.22985 1.03329 1.03989 0.90583 0.94292 0.92987 0.89445 0.77258 0.87517 0.86289 0.90924 0.88530 0.89154 0.86278 0.87364 0.88827 0.88558 0.88701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.72 101.05 1.08 1.43 16 2 O -0.36 -5.16 8.31 -55.14 -0.46 -5.62 16 3 C 0.11 1.43 2.87 -27.89 -0.08 1.35 16 4 H 0.09 0.95 7.78 -51.93 -0.40 0.55 16 5 C 0.48 8.69 6.92 -10.98 -0.08 8.61 16 6 O -0.51 -11.80 13.40 -14.36 -0.19 -12.00 16 7 N -0.65 -11.46 5.10 -9.74 -0.05 -11.50 16 8 C 0.00 0.04 6.30 -83.57 -0.53 -0.49 16 9 C -0.09 -2.29 8.61 -39.79 -0.34 -2.63 16 10 C -0.14 -3.89 8.57 -39.26 -0.34 -4.23 16 11 C 0.11 2.89 5.50 -106.80 -0.59 2.30 16 12 C -0.47 -12.55 9.03 -37.85 -0.34 -12.90 16 13 H 0.08 1.93 7.85 -52.49 -0.41 1.52 16 14 C 0.07 1.85 5.31 -17.33 -0.09 1.76 16 15 N -0.80 -21.78 10.96 55.55 0.61 -21.17 16 16 Si 0.91 19.20 29.56 -169.99 -5.03 14.17 16 17 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 18 H -0.28 -5.76 7.11 56.52 0.40 -5.35 16 19 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 20 C -0.21 -5.02 9.74 -39.26 -0.38 -5.40 16 21 C -0.11 -2.42 9.90 -39.79 -0.39 -2.81 16 22 C -0.16 -1.80 5.60 -90.62 -0.51 -2.30 16 23 C -0.16 -1.69 9.87 -26.69 -0.26 -1.95 16 24 C -0.17 -1.53 10.24 -26.69 -0.27 -1.80 16 25 H 0.04 0.37 7.97 -51.93 -0.41 -0.04 16 26 H 0.05 0.75 7.69 -51.93 -0.40 0.35 16 27 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.39 5.30 8.35 -40.82 -0.34 4.96 16 29 H 0.11 2.75 6.24 -52.49 -0.33 2.42 16 30 H 0.12 3.37 6.46 -52.49 -0.34 3.03 16 31 H 0.28 6.97 8.30 -40.82 -0.34 6.64 16 32 H 0.10 2.18 8.06 -52.48 -0.42 1.76 16 33 H 0.09 1.66 8.06 -52.49 -0.42 1.23 16 34 H 0.12 1.27 7.55 -51.93 -0.39 0.88 16 35 H 0.11 1.29 7.03 -51.93 -0.36 0.93 16 36 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 321.71 15.07 4.85 4.85 Total: -1.00 -31.60 321.71 -8.45 -40.05 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -5.06 Total: 10.27 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: -3.12 Total: -19.06 kcal Atomic # 7 Polarization: -33.23 SS G_CDS: 0.56 Total: -32.67 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.65 Total: -17.62 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.03 Total: 14.17 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.60 -8.45 -40.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279796312.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.289 kcal (2) G-P(sol) polarization free energy of solvation -31.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds