Wall clock time and date at job start Mon Mar 30 2020 01:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42904 * 114.00317 * 2 1 4 4 H 1.08998 * 109.46578 * 34.68035 * 3 2 1 5 5 C 1.50699 * 109.47065 * 274.68660 * 3 2 1 6 6 O 1.21288 * 119.99915 * 359.97438 * 5 3 2 7 7 N 1.34780 * 119.99982 * 179.97438 * 5 3 2 8 8 C 1.39234 * 119.99817 * 183.98088 * 7 5 3 9 9 C 1.39482 * 119.83831 * 324.59927 * 8 7 5 10 10 C 1.36372 * 120.17056 * 180.29789 * 9 8 7 11 11 C 1.40874 * 119.82713 * 359.47695 * 10 9 8 12 12 C 1.41153 * 120.16319 * 180.25231 * 11 10 9 13 13 H 1.08000 * 120.00220 * 214.23220 * 12 11 10 14 14 C 1.39906 * 120.00235 * 34.22585 * 12 11 10 15 15 N 1.30875 * 119.99948 * 5.72326 * 14 12 11 16 16 Si 1.86793 * 120.00156 * 185.72308 * 14 12 11 17 17 H 1.48494 * 109.47496 * 60.00233 * 16 14 12 18 18 H 1.48505 * 109.47099 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47136 * 300.00125 * 16 14 12 20 20 C 1.40865 * 119.67199 * 0.52095 * 11 10 9 21 21 C 1.36373 * 119.82798 * 359.72835 * 20 11 10 22 22 C 1.52995 * 109.47469 * 154.68224 * 3 2 1 23 23 C 1.52996 * 117.49804 * 3.75158 * 22 3 2 24 24 C 1.53000 * 117.49945 * 295.08786 * 22 3 2 25 25 H 1.08997 * 109.47815 * 304.99043 * 1 2 3 26 26 H 1.09003 * 109.46926 * 64.98695 * 1 2 3 27 27 H 1.09001 * 109.47502 * 184.98673 * 1 2 3 28 28 H 0.96999 * 119.99838 * 3.98566 * 7 5 3 29 29 H 1.07999 * 119.91293 * 0.02562 * 9 8 7 30 30 H 1.07997 * 120.08549 * 179.70225 * 10 9 8 31 31 H 0.96997 * 120.00300 * 179.97438 * 15 14 12 32 32 H 1.08004 * 120.08475 * 179.71289 * 20 11 10 33 33 H 1.08001 * 119.91553 * 180.02562 * 21 20 11 34 34 H 1.09002 * 115.54620 * 149.41601 * 22 3 2 35 35 H 1.09000 * 117.50146 * 359.97438 * 23 22 3 36 36 H 1.09003 * 117.50449 * 145.02143 * 23 22 3 37 37 H 1.08997 * 117.49550 * 214.97777 * 24 22 3 38 38 H 1.08999 * 117.49946 * 0.02562 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3860 1.9811 0.5847 5 6 2.1085 1.8116 -1.4161 6 8 1.7195 1.1220 -2.3349 7 7 2.6287 3.0305 -1.6615 8 6 2.6437 3.5323 -2.9601 9 6 2.8473 2.6681 -4.0358 10 6 2.8693 3.1532 -5.3102 11 6 2.6747 4.5295 -5.5394 12 6 2.6908 5.0385 -6.8559 13 1 3.0871 6.0244 -7.0489 14 6 2.1936 4.2657 -7.9108 15 7 1.6120 3.1193 -7.6648 16 14 2.3597 4.8699 -9.6705 17 1 3.7970 5.0446 -10.0003 18 1 1.7567 3.8758 -10.5943 19 1 1.6569 6.1700 -9.8159 20 6 2.4696 5.3961 -4.4480 21 6 2.4553 4.8970 -3.1789 22 6 3.4088 1.2410 0.6168 23 6 3.9428 -0.1365 1.0144 24 6 3.5122 0.8589 2.0948 25 1 -0.3634 0.5893 0.8418 26 1 -0.3633 0.4345 -0.9313 27 1 -0.3634 -1.0238 0.0893 28 1 2.9927 3.5580 -0.9334 29 1 2.9923 1.6126 -3.8588 30 1 3.0319 2.4835 -6.1417 31 1 1.2669 2.5837 -8.3961 32 1 2.3244 6.4531 -4.6157 33 1 2.2978 5.5600 -2.3411 34 1 4.1256 1.9671 0.2333 35 1 3.2975 -0.9969 0.8370 36 1 5.0109 -0.3166 0.8931 37 1 4.2973 1.3334 2.6834 38 1 2.5839 0.6530 2.6275 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279796312.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:56 Heat of formation + Delta-G solvation = -50.750934 kcal Electronic energy + Delta-G solvation = -20764.698652 eV Core-core repulsion = 17572.191063 eV Total energy + Delta-G solvation = -3192.507589 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.53764 -39.70601 -38.50218 -37.12510 -36.10087 -34.70875 -31.55992 -31.20875 -29.64589 -27.42714 -26.33909 -23.43743 -23.17696 -22.97602 -22.16534 -20.88058 -19.24761 -18.98214 -18.07994 -17.45424 -17.10626 -16.75667 -16.09871 -15.86540 -15.72367 -15.40469 -14.78762 -14.63356 -14.37836 -14.06551 -13.87065 -13.67456 -13.38109 -12.83380 -12.73820 -12.53760 -12.41101 -12.34328 -12.23798 -11.90006 -11.75119 -11.52494 -11.34693 -11.15212 -11.05899 -10.62788 -10.13978 -9.47936 -8.79095 -8.55052 -6.32727 0.77860 1.10623 1.37812 1.43627 1.50806 1.72699 2.14584 2.22846 2.69154 2.80931 2.96789 3.58130 3.67485 3.83408 3.93834 4.17026 4.25090 4.37873 4.41726 4.44979 4.50294 4.56170 4.80703 4.87424 4.95929 5.01196 5.09733 5.15010 5.24194 5.29955 5.37758 5.40341 5.67524 5.81467 5.99385 6.06027 6.10453 6.33636 6.67343 6.69992 6.93917 6.99437 7.37537 8.41623 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.033614 B = 0.003810 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.792339 B = 7348.024199 C = 7681.918308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.374 6.374 3 C 0.116 3.884 4 H 0.120 0.880 5 C 0.474 3.526 6 O -0.568 6.568 7 N -0.638 5.638 8 C 0.017 3.983 9 C -0.106 4.106 10 C -0.167 4.167 11 C 0.073 3.927 12 C -0.501 4.501 13 H 0.082 0.918 14 C 0.025 3.975 15 N -0.847 5.847 16 Si 0.989 3.011 17 H -0.258 1.258 18 H -0.274 1.274 19 H -0.257 1.257 20 C -0.212 4.212 21 C -0.103 4.103 22 C -0.175 4.175 23 C -0.175 4.175 24 C -0.139 4.139 25 H 0.071 0.929 26 H 0.021 0.979 27 H 0.103 0.897 28 H 0.419 0.581 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.283 0.717 32 H 0.114 0.886 33 H 0.139 0.861 34 H 0.126 0.874 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.120 0.880 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.478 -1.250 18.141 18.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.291 6.291 3 C 0.054 3.946 4 H 0.137 0.863 5 C 0.262 3.738 6 O -0.446 6.446 7 N -0.285 5.285 8 C -0.077 4.077 9 C -0.127 4.127 10 C -0.187 4.187 11 C 0.071 3.929 12 C -0.531 4.531 13 H 0.100 0.900 14 C -0.187 4.187 15 N -0.474 5.474 16 Si 0.809 3.191 17 H -0.182 1.182 18 H -0.199 1.199 19 H -0.181 1.181 20 C -0.231 4.231 21 C -0.123 4.123 22 C -0.194 4.194 23 C -0.212 4.212 24 C -0.176 4.176 25 H 0.089 0.911 26 H 0.040 0.960 27 H 0.121 0.879 28 H 0.257 0.743 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.093 0.907 32 H 0.132 0.868 33 H 0.157 0.843 34 H 0.143 0.857 35 H 0.110 0.890 36 H 0.119 0.881 37 H 0.138 0.862 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.164 -2.139 17.438 17.607 hybrid contribution -0.226 0.256 -1.153 1.202 sum 0.939 -1.883 16.285 16.420 Atomic orbital electron populations 1.22991 0.79648 1.04284 1.00204 1.87931 1.21282 1.25701 1.94199 1.21531 0.96824 0.86622 0.89607 0.86253 1.22252 0.76877 0.81488 0.93231 1.90712 1.49285 1.57030 1.47613 1.42918 1.59485 1.18282 1.07865 1.17340 1.13518 0.92814 0.84022 1.20587 1.01072 0.98026 0.92974 1.20905 1.06211 0.96784 0.94850 1.18017 0.88943 0.91909 0.94038 1.19771 1.38170 1.02897 0.92306 0.89986 1.26837 0.92059 0.94030 1.05755 1.69918 1.29368 1.12396 1.35752 0.85154 0.79747 0.78914 0.75244 1.18228 1.19854 1.18079 1.20957 1.10340 0.99306 0.92533 1.20466 1.01519 0.93044 0.97226 1.22315 0.94497 1.02313 1.00228 1.22921 1.01490 0.93095 1.03703 1.23084 1.04124 1.01265 0.89079 0.91053 0.96048 0.87896 0.74266 0.89025 0.89048 0.90675 0.86784 0.84291 0.85651 0.89035 0.88117 0.86219 0.87795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 10.72 113.37 1.22 1.78 16 2 O -0.37 -10.31 8.31 -129.94 -1.08 -11.39 16 3 C 0.12 2.84 2.87 29.85 0.09 2.93 16 4 H 0.12 2.15 7.78 -2.39 -0.02 2.13 16 5 C 0.47 16.82 6.92 87.66 0.61 17.43 16 6 O -0.57 -26.93 13.40 15.98 0.21 -26.71 16 7 N -0.64 -21.21 5.10 -303.10 -1.54 -22.76 16 8 C 0.02 0.73 6.30 38.57 0.24 0.97 16 9 C -0.11 -5.61 8.61 22.13 0.19 -5.42 16 10 C -0.17 -9.61 8.57 22.48 0.19 -9.42 16 11 C 0.07 4.08 5.50 -21.28 -0.12 3.97 16 12 C -0.50 -27.75 9.03 23.39 0.21 -27.53 16 13 H 0.08 4.26 7.85 -2.91 -0.02 4.23 16 14 C 0.03 1.34 5.31 85.24 0.45 1.79 16 15 N -0.85 -48.13 10.96 21.82 0.24 -47.90 16 16 Si 0.99 40.11 29.56 68.60 2.03 42.14 16 17 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 18 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 19 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 20 C -0.21 -10.13 9.74 22.48 0.22 -9.92 16 21 C -0.10 -4.26 9.90 22.14 0.22 -4.04 16 22 C -0.18 -3.43 5.60 -10.80 -0.06 -3.49 16 23 C -0.18 -3.41 9.87 30.62 0.30 -3.11 16 24 C -0.14 -1.90 10.24 30.62 0.31 -1.59 16 25 H 0.07 1.15 7.97 -2.39 -0.02 1.13 16 26 H 0.02 0.61 7.69 -2.39 -0.02 0.59 16 27 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.42 9.73 8.35 -92.71 -0.77 8.96 16 29 H 0.09 5.03 6.24 -2.91 -0.02 5.01 16 30 H 0.09 5.62 6.46 -2.91 -0.02 5.60 16 31 H 0.28 14.80 8.30 -92.71 -0.77 14.03 16 32 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 33 H 0.14 4.41 8.06 -2.91 -0.02 4.39 16 34 H 0.13 2.28 7.55 -2.39 -0.02 2.26 16 35 H 0.09 2.10 7.03 -2.39 -0.02 2.08 16 36 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -73.63 321.71 4.23 -69.39 By element: Atomic # 1 Polarization: 32.58 SS G_CDS: 0.30 Total: 32.88 kcal Atomic # 6 Polarization: -39.72 SS G_CDS: 4.07 Total: -35.65 kcal Atomic # 7 Polarization: -69.35 SS G_CDS: -1.31 Total: -70.65 kcal Atomic # 8 Polarization: -37.24 SS G_CDS: -0.87 Total: -38.11 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.14 kcal Total: -73.63 4.23 -69.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279796312.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.642 kcal (2) G-P(sol) polarization free energy of solvation -73.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds