Wall clock time and date at job start Mon Mar 30 2020 02:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00373 * 2 1 4 4 H 1.48500 * 109.47084 * 270.00243 * 3 2 1 5 5 H 1.48497 * 109.46826 * 30.00073 * 3 2 1 6 6 H 1.48496 * 109.46996 * 150.00217 * 3 2 1 7 7 C 1.37885 * 119.99691 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99818 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99994 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47276 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47393 * 179.97438 * 10 9 7 12 12 C 1.34772 * 120.00157 * 179.97438 * 11 10 9 13 13 O 1.21587 * 120.00073 * 0.02562 * 12 11 10 14 14 N 1.34771 * 120.00421 * 179.97438 * 12 11 10 15 15 C 1.39390 * 120.00440 * 185.09867 * 14 12 11 16 16 C 1.39047 * 119.69859 * 174.89239 * 15 14 12 17 17 C 1.38345 * 119.10532 * 180.27195 * 16 15 14 18 18 C 1.50693 * 120.75888 * 179.73397 * 17 16 15 19 19 C 1.53009 * 117.49928 * 119.72295 * 18 17 16 20 20 C 1.52996 * 59.99822 * 107.49516 * 19 18 17 21 21 C 1.38851 * 118.48974 * 359.46532 * 17 16 15 22 22 C 1.38056 * 119.31461 * 0.27121 * 21 17 16 23 23 N 1.31944 * 120.84942 * 0.02562 * 22 21 17 24 24 H 0.96999 * 119.99796 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47579 * 59.99745 * 9 7 2 26 26 H 1.09003 * 109.46620 * 299.99935 * 9 7 2 27 27 H 1.09001 * 109.46930 * 59.99464 * 10 9 7 28 28 H 1.08997 * 109.46726 * 299.99935 * 10 9 7 29 29 H 0.97001 * 119.99687 * 0.02562 * 11 10 9 30 30 H 0.97008 * 119.99506 * 5.10194 * 14 12 11 31 31 H 1.08004 * 120.45264 * 0.03470 * 16 15 14 32 32 H 1.09008 * 115.56220 * 334.03894 * 18 17 16 33 33 H 1.08992 * 117.49967 * 0.02562 * 19 18 17 34 34 H 1.09003 * 117.49343 * 214.98414 * 19 18 17 35 35 H 1.09000 * 117.50337 * 107.49326 * 20 19 18 36 36 H 1.09004 * 117.49887 * 252.48871 * 20 19 18 37 37 H 1.08005 * 120.34339 * 180.24830 * 21 17 16 38 38 H 1.08002 * 119.57537 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 7 1.5125 -4.9309 0.0012 12 6 2.1863 -6.0981 0.0007 13 8 3.4021 -6.0982 0.0003 14 7 1.5124 -7.2652 0.0018 15 6 2.2053 -8.4700 0.1087 16 6 1.4996 -9.6633 0.2165 17 6 2.1997 -10.8514 0.3276 18 6 1.4727 -12.1654 0.4525 19 6 1.7198 -13.2154 -0.6327 20 6 2.3083 -13.4081 0.7663 21 6 3.5874 -10.8060 0.3157 22 6 4.2229 -9.5859 0.2001 23 7 3.5287 -8.4681 0.1017 24 1 -0.4850 0.8401 0.0004 25 1 0.6245 -2.5572 -0.8896 26 1 0.6239 -2.5566 0.8903 27 1 2.8717 -3.6044 0.8905 28 1 2.8716 -3.6044 -0.8895 29 1 0.5425 -4.9308 0.0011 30 1 0.5451 -7.2668 -0.0718 31 1 0.4196 -9.6624 0.2173 32 1 0.4719 -12.1105 0.8810 33 1 2.4085 -12.9559 -1.4367 34 1 0.8816 -13.8511 -0.9180 35 1 1.8574 -14.1706 1.4014 36 1 3.3840 -13.2755 0.8825 37 1 4.1638 -11.7158 0.3965 38 1 5.3021 -9.5458 0.1900 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289818617.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:03 Heat of formation + Delta-G solvation = 36.840996 kcal Electronic energy + Delta-G solvation = -19727.745423 eV Core-core repulsion = 16571.328856 eV Total energy + Delta-G solvation = -3156.416567 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.85133 -39.34902 -37.51008 -35.10204 -34.42169 -32.82261 -32.03775 -30.38416 -29.05759 -25.24063 -24.45443 -23.52474 -22.67186 -21.78730 -20.81268 -20.07798 -18.37257 -17.57979 -16.51667 -16.29998 -16.01653 -15.47519 -15.33074 -14.62748 -14.45428 -14.31003 -14.04483 -13.90040 -13.47261 -13.06594 -12.56747 -12.27219 -12.00693 -11.84275 -11.43791 -11.18663 -11.04497 -10.84371 -10.65749 -10.61823 -10.25857 -10.12620 -9.61076 -9.40537 -9.30756 -8.95395 -8.57029 -8.40086 -8.13546 -6.08733 -4.11184 1.09272 1.18361 2.69055 3.30666 3.32391 3.36698 3.41477 3.56608 4.01184 4.11146 4.24206 4.43463 4.44661 4.55500 4.67944 4.76463 4.94050 5.00439 5.17045 5.27842 5.28546 5.41124 5.59155 5.63226 5.69051 5.78366 6.13561 6.25095 6.30750 6.39557 6.75198 6.77609 6.95485 7.00286 7.54934 7.63128 7.90270 7.99043 8.26505 8.41631 8.92331 8.97119 9.53523 11.02970 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.059959 B = 0.002575 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.872502 B =10870.885224 C =11249.361290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.140 3.860 11 N -0.735 5.735 12 C 0.686 3.314 13 O -0.534 6.534 14 N -0.674 5.674 15 C 0.392 3.608 16 C -0.212 4.212 17 C 0.018 3.982 18 C -0.122 4.122 19 C -0.165 4.165 20 C -0.173 4.173 21 C -0.219 4.219 22 C 0.139 3.861 23 N -0.475 5.475 24 H 0.262 0.738 25 H 0.022 0.978 26 H 0.022 0.978 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.393 0.607 30 H 0.411 0.589 31 H 0.134 0.866 32 H 0.117 0.883 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.131 0.869 38 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.074 -26.648 0.466 26.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.018 3.982 11 N -0.390 5.390 12 C 0.385 3.615 13 O -0.405 6.405 14 N -0.322 5.322 15 C 0.159 3.841 16 C -0.236 4.236 17 C 0.010 3.990 18 C -0.140 4.140 19 C -0.202 4.202 20 C -0.210 4.210 21 C -0.241 4.241 22 C -0.019 4.019 23 N -0.190 5.190 24 H 0.071 0.929 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.226 0.774 30 H 0.247 0.753 31 H 0.151 0.849 32 H 0.135 0.865 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.149 0.851 38 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 1.489 -25.526 0.401 25.572 hybrid contribution -1.129 0.194 0.045 1.146 sum 0.360 -25.332 0.446 25.338 Atomic orbital electron populations 1.69953 1.06095 1.26860 1.50469 1.25000 0.94904 0.99430 0.95009 0.86499 0.79851 0.82943 0.78197 1.20559 1.21194 1.19697 1.21050 0.93303 0.90309 1.51236 0.92169 1.19330 0.94251 0.91039 0.97839 1.21640 0.95675 0.80046 1.00862 1.45607 1.09916 1.05136 1.78298 1.16170 0.86054 0.80124 0.79154 1.91021 1.10672 1.85282 1.53545 1.42887 1.10216 1.03548 1.75539 1.18181 0.88883 0.84572 0.92439 1.21142 1.00767 0.91058 1.10612 1.19161 0.93044 0.92851 0.93950 1.21016 1.00159 0.87478 1.05335 1.23035 1.03627 1.01028 0.92547 1.23076 1.00143 0.98810 0.98942 1.21864 0.94416 0.99695 1.08093 1.22667 1.00205 0.86609 0.92459 1.67760 1.05682 1.30343 1.15178 0.92866 0.95944 0.95922 0.92586 0.92579 0.77394 0.75270 0.84858 0.86542 0.88369 0.88234 0.88256 0.88094 0.85090 0.82587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.19 13.29 55.43 0.74 -25.46 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 9 C 0.01 0.32 5.09 -27.89 -0.14 0.18 16 10 C 0.14 3.05 5.61 -4.04 -0.02 3.02 16 11 N -0.73 -13.14 5.56 -65.23 -0.36 -13.50 16 12 C 0.69 12.63 8.52 -86.93 -0.74 11.89 16 13 O -0.53 -12.09 14.61 5.29 0.08 -12.01 16 14 N -0.67 -9.43 5.39 -15.81 -0.09 -9.51 16 15 C 0.39 5.63 7.42 -154.72 -1.15 4.48 16 16 C -0.21 -2.29 9.67 -39.24 -0.38 -2.67 16 17 C 0.02 0.18 5.64 -104.36 -0.59 -0.41 16 18 C -0.12 -0.87 6.08 -91.77 -0.56 -1.43 16 19 C -0.17 -0.99 10.18 -26.73 -0.27 -1.26 16 20 C -0.17 -1.00 9.88 -26.73 -0.26 -1.26 16 21 C -0.22 -2.17 9.38 -39.42 -0.37 -2.54 16 22 C 0.14 1.74 11.17 -17.57 -0.20 1.54 16 23 N -0.48 -7.82 7.89 -12.37 -0.10 -7.92 16 24 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 25 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.39 5.87 8.49 -40.82 -0.35 5.52 16 30 H 0.41 4.02 8.72 -40.82 -0.36 3.67 16 31 H 0.13 1.07 8.06 -52.48 -0.42 0.64 16 32 H 0.12 0.72 8.14 -51.92 -0.42 0.29 16 33 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.10 0.56 6.26 -51.93 -0.32 0.23 16 37 H 0.13 0.96 6.16 -52.48 -0.32 0.63 16 38 H 0.16 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 327.72 15.07 4.94 4.94 Total: -1.00 -34.72 327.72 -10.03 -44.75 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -5.12 Total: 3.96 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -5.09 Total: -1.74 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: 0.19 Total: -56.39 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.08 Total: -12.01 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.72 -10.03 -44.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289818617.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.586 kcal (2) G-P(sol) polarization free energy of solvation -34.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds