Wall clock time and date at job start Mon Mar 30 2020 02:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00373 * 2 1 4 4 H 1.48500 * 109.47084 * 270.00243 * 3 2 1 5 5 H 1.48497 * 109.46826 * 30.00073 * 3 2 1 6 6 H 1.48496 * 109.46996 * 150.00217 * 3 2 1 7 7 C 1.37885 * 119.99691 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99818 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99994 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47276 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47393 * 179.97438 * 10 9 7 12 12 C 1.34772 * 120.00157 * 179.97438 * 11 10 9 13 13 O 1.21587 * 120.00073 * 0.02562 * 12 11 10 14 14 N 1.34771 * 120.00421 * 179.97438 * 12 11 10 15 15 C 1.39390 * 120.00440 * 185.09867 * 14 12 11 16 16 C 1.39047 * 119.69859 * 174.89239 * 15 14 12 17 17 C 1.38345 * 119.10532 * 180.27195 * 16 15 14 18 18 C 1.50693 * 120.75888 * 179.73397 * 17 16 15 19 19 C 1.53009 * 117.49928 * 119.72295 * 18 17 16 20 20 C 1.52996 * 59.99822 * 107.49516 * 19 18 17 21 21 C 1.38851 * 118.48974 * 359.46532 * 17 16 15 22 22 C 1.38056 * 119.31461 * 0.27121 * 21 17 16 23 23 N 1.31944 * 120.84942 * 0.02562 * 22 21 17 24 24 H 0.96999 * 119.99796 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47579 * 59.99745 * 9 7 2 26 26 H 1.09003 * 109.46620 * 299.99935 * 9 7 2 27 27 H 1.09001 * 109.46930 * 59.99464 * 10 9 7 28 28 H 1.08997 * 109.46726 * 299.99935 * 10 9 7 29 29 H 0.97001 * 119.99687 * 0.02562 * 11 10 9 30 30 H 0.97008 * 119.99506 * 5.10194 * 14 12 11 31 31 H 1.08004 * 120.45264 * 0.03470 * 16 15 14 32 32 H 1.09008 * 115.56220 * 334.03894 * 18 17 16 33 33 H 1.08992 * 117.49967 * 0.02562 * 19 18 17 34 34 H 1.09003 * 117.49343 * 214.98414 * 19 18 17 35 35 H 1.09000 * 117.50337 * 107.49326 * 20 19 18 36 36 H 1.09004 * 117.49887 * 252.48871 * 20 19 18 37 37 H 1.08005 * 120.34339 * 180.24830 * 21 17 16 38 38 H 1.08002 * 119.57537 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 7 1.5125 -4.9309 0.0012 12 6 2.1863 -6.0981 0.0007 13 8 3.4021 -6.0982 0.0003 14 7 1.5124 -7.2652 0.0018 15 6 2.2053 -8.4700 0.1087 16 6 1.4996 -9.6633 0.2165 17 6 2.1997 -10.8514 0.3276 18 6 1.4727 -12.1654 0.4525 19 6 1.7198 -13.2154 -0.6327 20 6 2.3083 -13.4081 0.7663 21 6 3.5874 -10.8060 0.3157 22 6 4.2229 -9.5859 0.2001 23 7 3.5287 -8.4681 0.1017 24 1 -0.4850 0.8401 0.0004 25 1 0.6245 -2.5572 -0.8896 26 1 0.6239 -2.5566 0.8903 27 1 2.8717 -3.6044 0.8905 28 1 2.8716 -3.6044 -0.8895 29 1 0.5425 -4.9308 0.0011 30 1 0.5451 -7.2668 -0.0718 31 1 0.4196 -9.6624 0.2173 32 1 0.4719 -12.1105 0.8810 33 1 2.4085 -12.9559 -1.4367 34 1 0.8816 -13.8511 -0.9180 35 1 1.8574 -14.1706 1.4014 36 1 3.3840 -13.2755 0.8825 37 1 4.1638 -11.7158 0.3965 38 1 5.3021 -9.5458 0.1900 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289818617.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:03 Heat of formation + Delta-G solvation = 14.351538 kcal Electronic energy + Delta-G solvation = -19728.720639 eV Core-core repulsion = 16571.328856 eV Total energy + Delta-G solvation = -3157.391783 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.90810 -40.55065 -38.20673 -36.67191 -35.79338 -34.80335 -32.87589 -31.87233 -30.48825 -26.88952 -25.58761 -24.43926 -23.21445 -23.13012 -22.40577 -21.11027 -19.71998 -18.55646 -18.39914 -17.29769 -16.93689 -16.85694 -16.45863 -16.27091 -15.83861 -15.46192 -15.17099 -14.93013 -14.68767 -14.55072 -14.28100 -13.25632 -13.21292 -12.96292 -12.61390 -12.52361 -12.42405 -12.25269 -12.06116 -11.70576 -11.63730 -11.54608 -11.32312 -11.28646 -10.60289 -10.15990 -10.07753 -10.05576 -9.21696 -8.24231 -6.34194 0.17738 0.33390 1.40834 1.42522 1.46869 1.55042 2.09685 2.40812 2.80767 3.05807 3.10643 3.18729 3.45511 3.76062 3.92658 4.04462 4.07738 4.19874 4.22460 4.45960 4.49715 4.50800 4.78463 4.81368 4.85568 4.87239 5.07261 5.12386 5.26508 5.26620 5.31434 5.47257 5.49197 5.58996 5.73632 5.81939 5.90298 6.16741 6.77962 6.81726 7.27404 7.34861 7.57671 8.87686 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.059959 B = 0.002575 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.872502 B =10870.885224 C =11249.361290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.162 3.838 11 N -0.727 5.727 12 C 0.688 3.312 13 O -0.581 6.581 14 N -0.659 5.659 15 C 0.358 3.642 16 C -0.199 4.199 17 C 0.016 3.984 18 C -0.134 4.134 19 C -0.161 4.161 20 C -0.167 4.167 21 C -0.203 4.203 22 C 0.116 3.884 23 N -0.529 5.529 24 H 0.266 0.734 25 H 0.011 0.989 26 H 0.010 0.990 27 H 0.043 0.957 28 H 0.044 0.956 29 H 0.409 0.591 30 H 0.431 0.569 31 H 0.163 0.837 32 H 0.130 0.870 33 H 0.092 0.908 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.103 0.897 37 H 0.160 0.840 38 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.471 -28.588 0.630 28.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.585 4.585 8 H 0.076 0.924 9 C -0.013 4.013 10 C 0.037 3.963 11 N -0.383 5.383 12 C 0.387 3.613 13 O -0.456 6.456 14 N -0.309 5.309 15 C 0.126 3.874 16 C -0.223 4.223 17 C 0.008 3.992 18 C -0.152 4.152 19 C -0.198 4.198 20 C -0.203 4.203 21 C -0.225 4.225 22 C -0.041 4.041 23 N -0.245 5.245 24 H 0.075 0.925 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.244 0.756 30 H 0.270 0.730 31 H 0.181 0.819 32 H 0.148 0.852 33 H 0.110 0.890 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.121 0.879 37 H 0.177 0.823 38 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 0.898 -27.529 0.564 27.550 hybrid contribution -0.965 0.620 -0.003 1.147 sum -0.068 -26.910 0.560 26.916 Atomic orbital electron populations 1.70051 1.07479 1.28000 1.51007 1.25865 0.95828 1.03061 0.94429 0.85441 0.78607 0.78456 0.78527 1.19746 1.20437 1.19166 1.21458 0.93597 0.91904 1.51533 0.92366 1.19128 0.94192 0.91470 0.96508 1.21103 0.94678 0.80799 0.99678 1.45251 1.10512 1.04099 1.78443 1.16259 0.85556 0.80957 0.78516 1.90986 1.12833 1.86156 1.55612 1.42543 1.11028 1.02305 1.75030 1.18484 0.88890 0.85285 0.94694 1.21413 1.02181 0.89928 1.08765 1.19559 0.93169 0.93873 0.92611 1.21082 1.00829 0.86406 1.06891 1.23107 1.04001 1.00291 0.92402 1.23197 1.00212 0.97993 0.98929 1.22156 0.94955 0.99676 1.05667 1.22962 1.00898 0.86839 0.93376 1.67589 1.07300 1.32713 1.16861 0.92523 0.97111 0.97126 0.93836 0.93755 0.75567 0.72970 0.81916 0.85240 0.88953 0.86768 0.86789 0.87885 0.82260 0.81520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.46 13.29 21.45 0.28 -54.18 16 2 C 0.01 0.39 5.46 84.66 0.46 0.85 16 3 Si 0.97 44.09 29.54 68.60 2.03 46.12 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.55 -30.93 9.11 25.60 0.23 -30.70 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 9 C 0.02 1.25 5.09 29.85 0.15 1.41 16 10 C 0.16 7.21 5.61 86.38 0.48 7.70 16 11 N -0.73 -26.37 5.56 -478.55 -2.66 -29.03 16 12 C 0.69 25.82 8.52 179.06 1.53 27.34 16 13 O -0.58 -27.29 14.61 -3.99 -0.06 -27.35 16 14 N -0.66 -18.30 5.39 -322.21 -1.74 -20.03 16 15 C 0.36 10.19 7.42 132.93 0.99 11.18 16 16 C -0.20 -3.94 9.67 22.49 0.22 -3.72 16 17 C 0.02 0.28 5.64 -19.69 -0.11 0.17 16 18 C -0.13 -1.48 6.08 -11.54 -0.07 -1.55 16 19 C -0.16 -1.40 10.18 30.60 0.31 -1.09 16 20 C -0.17 -1.34 9.88 30.59 0.30 -1.04 16 21 C -0.20 -3.69 9.38 22.37 0.21 -3.48 16 22 C 0.12 2.91 11.17 84.63 0.95 3.85 16 23 N -0.53 -17.81 7.89 -193.05 -1.52 -19.34 16 24 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 25 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.41 12.15 8.49 -92.71 -0.79 11.36 16 30 H 0.43 7.95 8.72 -92.70 -0.81 7.14 16 31 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 32 H 0.13 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.10 0.78 6.26 -2.39 -0.01 0.77 16 37 H 0.16 1.88 6.16 -2.91 -0.02 1.87 16 38 H 0.17 3.46 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -76.32 327.72 1.48 -74.84 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -0.50 Total: 18.04 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: 5.65 Total: 10.91 kcal Atomic # 7 Polarization: -116.94 SS G_CDS: -5.64 Total: -122.57 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -0.06 Total: -27.35 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -76.32 1.48 -74.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289818617.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.196 kcal (2) G-P(sol) polarization free energy of solvation -76.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds