Wall clock time and date at job start Mon Mar 30 2020 02:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86794 * 120.00122 * 2 1 4 4 H 1.48505 * 109.47044 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47035 * 299.99351 * 3 2 1 6 6 H 1.48495 * 109.47191 * 59.99931 * 3 2 1 7 7 C 1.37883 * 119.99345 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99279 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00158 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.01671 * 59.94062 * 9 7 2 11 11 C 1.53869 * 110.03004 * 298.54124 * 9 7 2 12 12 C 1.54266 * 106.60031 * 240.66866 * 11 9 7 13 13 C 1.54894 * 104.31305 * 336.32486 * 12 11 9 14 14 H 1.08993 * 110.76071 * 279.69749 * 13 12 11 15 15 N 1.46498 * 110.75336 * 156.31761 * 13 12 11 16 16 C 1.38461 * 119.99674 * 86.46103 * 15 13 12 17 17 C 1.39399 * 119.53569 * 359.97438 * 16 15 13 18 18 C 1.36860 * 119.37411 * 179.97438 * 17 16 15 19 19 C 1.40344 * 118.49435 * 0.02562 * 18 17 16 20 20 C 1.47544 * 120.47296 * 179.97438 * 19 18 17 21 21 N 1.34776 * 119.99684 * 179.97438 * 20 19 18 22 22 O 1.21596 * 120.00066 * 359.97438 * 20 19 18 23 23 C 1.39557 * 119.05127 * 359.97438 * 19 18 17 24 24 N 1.31678 * 120.51776 * 359.73524 * 23 19 18 25 25 C 1.54266 * 110.07004 * 181.35410 * 9 7 2 26 26 H 0.96997 * 119.99897 * 0.02562 * 1 2 3 27 27 H 1.09001 * 110.02983 * 121.38618 * 11 9 7 28 28 H 1.08996 * 110.07773 * 359.97438 * 11 9 7 29 29 H 1.09002 * 110.48629 * 95.07240 * 12 11 9 30 30 H 1.08998 * 110.48744 * 217.58143 * 12 11 9 31 31 H 0.97002 * 120.00493 * 266.45577 * 15 13 12 32 32 H 1.07993 * 120.31275 * 359.97438 * 17 16 15 33 33 H 1.08003 * 120.75143 * 180.02562 * 18 17 16 34 34 H 0.97003 * 120.00170 * 359.97438 * 21 20 19 35 35 H 0.97005 * 119.99938 * 180.02562 * 21 20 19 36 36 H 1.07998 * 119.74099 * 180.02562 * 23 19 18 37 37 H 1.09005 * 110.48526 * 261.59666 * 25 9 7 38 38 H 1.09006 * 110.48581 * 24.23858 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3463 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6204 -2.5660 -0.8861 11 6 0.3887 -2.6099 1.2702 12 6 0.8844 -3.8562 2.0323 13 6 1.5460 -4.7343 0.9412 14 1 0.7924 -5.2884 0.3818 15 7 2.5293 -5.6447 1.5331 16 6 2.1255 -6.8735 2.0272 17 6 0.7808 -7.2342 1.9568 18 6 0.3854 -8.4498 2.4457 19 6 1.3566 -9.2947 3.0048 20 6 0.9785 -10.6145 3.5452 21 7 1.9191 -11.4185 4.0795 22 8 -0.1816 -10.9769 3.5086 23 6 2.6850 -8.8686 3.0422 24 7 3.0241 -7.6931 2.5554 25 6 2.2406 -3.6821 0.0354 26 1 -0.4850 0.8400 -0.0004 27 1 -0.6603 -2.7304 0.9997 28 1 0.5152 -1.7203 1.8871 29 1 1.6154 -3.5742 2.7902 30 1 0.0463 -4.3825 2.4891 31 1 3.4633 -5.3868 1.5789 32 1 0.0579 -6.5608 1.5207 33 1 -0.6506 -8.7520 2.4022 34 1 2.8447 -11.1295 4.1084 35 1 1.6707 -12.2863 4.4345 36 1 3.4415 -9.5100 3.4695 37 1 2.3919 -4.0825 -0.9670 38 1 3.1905 -3.3719 0.4708 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295017361.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:47 Heat of formation + Delta-G solvation = -14.750633 kcal Electronic energy + Delta-G solvation = -20340.860139 eV Core-core repulsion = 17182.206391 eV Total energy + Delta-G solvation = -3158.653747 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.63364 -39.08261 -37.71753 -34.70448 -33.85718 -32.62221 -32.11144 -29.74692 -28.27719 -26.91205 -24.38992 -23.50778 -23.34524 -20.92064 -19.97381 -19.17374 -18.34655 -17.60019 -17.08401 -16.36350 -15.95762 -15.28131 -14.98389 -14.77428 -14.65728 -14.27484 -14.01761 -13.87142 -13.06571 -12.88098 -12.65601 -12.41998 -11.92760 -11.34602 -11.11434 -10.94577 -10.57113 -10.47074 -10.34612 -10.25245 -10.02662 -9.91032 -9.80151 -9.68385 -9.49545 -9.34892 -8.79421 -8.43821 -7.67363 -6.07966 -4.11635 0.84895 1.32962 2.86785 3.18035 3.25099 3.33920 3.36957 3.37866 3.93043 4.38288 4.40496 4.79216 4.82790 4.98963 5.13843 5.21560 5.30487 5.43642 5.58727 5.68737 5.90409 6.03108 6.16324 6.29094 6.36893 6.44918 6.51554 6.57049 6.59541 6.80791 6.99871 7.14063 7.16483 7.23349 7.60353 7.63337 7.82173 7.89560 8.06419 8.13368 8.36686 8.91448 9.52899 11.01126 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.051818 B = 0.003109 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.225185 B = 9003.121397 C = 9316.842419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.514 4.514 8 H 0.056 0.944 9 C 0.048 3.952 10 H 0.030 0.970 11 C -0.091 4.091 12 C -0.136 4.136 13 C 0.134 3.866 14 H 0.085 0.915 15 N -0.694 5.694 16 C 0.435 3.565 17 C -0.247 4.247 18 C 0.027 3.973 19 C -0.279 4.279 20 C 0.578 3.422 21 N -0.857 5.857 22 O -0.552 6.552 23 C 0.193 3.807 24 N -0.557 5.557 25 C -0.116 4.116 26 H 0.260 0.740 27 H 0.041 0.959 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.406 0.594 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.399 0.601 35 H 0.402 0.598 36 H 0.153 0.847 37 H 0.052 0.948 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.738 -17.299 6.065 18.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.141 4.141 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.553 4.553 8 H 0.074 0.926 9 C 0.029 3.971 10 H 0.048 0.952 11 C -0.130 4.130 12 C -0.175 4.175 13 C 0.029 3.971 14 H 0.103 0.897 15 N -0.320 5.320 16 C 0.197 3.803 17 C -0.272 4.272 18 C 0.001 3.999 19 C -0.288 4.288 20 C 0.366 3.634 21 N -0.420 5.420 22 O -0.430 6.430 23 C 0.031 3.969 24 N -0.275 5.275 25 C -0.154 4.154 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.242 0.758 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.228 0.772 35 H 0.233 0.767 36 H 0.170 0.830 37 H 0.071 0.929 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.505 -16.768 5.849 18.322 hybrid contribution 0.347 0.611 0.239 0.742 sum 4.852 -16.158 6.088 17.935 Atomic orbital electron populations 1.69984 1.05846 1.26474 1.50276 1.24983 0.94857 0.99085 0.95162 0.86585 0.80158 0.83962 0.77596 1.19814 1.21043 1.21064 1.21242 0.92754 0.90338 1.50923 0.92610 1.19206 0.92225 0.91410 0.94258 0.95168 1.22039 0.98187 0.94621 0.98121 1.22894 0.99239 0.97741 0.97660 1.22488 0.90502 0.89256 0.94814 0.89726 1.44991 1.11933 1.13733 1.61293 1.18685 0.89102 0.86003 0.86552 1.21261 0.95790 0.99767 1.10363 1.21102 0.99645 0.90779 0.88396 1.20367 0.95920 0.97914 1.14607 1.18006 0.84905 0.84145 0.76373 1.43741 1.11501 1.21713 1.65086 1.90802 1.18912 1.75457 1.57867 1.22495 0.93176 0.90786 0.90453 1.67259 1.36688 1.05675 1.17880 1.22808 1.00234 0.95445 0.96918 0.93045 0.93995 0.91392 0.92105 0.93163 0.75818 0.84068 0.84082 0.77192 0.76706 0.82992 0.92872 0.91731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.57 12.33 55.43 0.68 -23.89 16 2 C 0.06 1.62 5.07 -17.81 -0.09 1.53 16 3 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.51 -13.32 8.34 -34.44 -0.29 -13.60 16 8 H 0.06 1.43 7.55 -52.49 -0.40 1.04 16 9 C 0.05 1.10 2.84 -90.66 -0.26 0.84 16 10 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 11 C -0.09 -1.96 5.55 -25.62 -0.14 -2.11 16 12 C -0.14 -2.37 6.50 -25.07 -0.16 -2.53 16 13 C 0.13 2.10 2.79 -65.75 -0.18 1.92 16 14 H 0.08 1.27 6.62 -51.93 -0.34 0.93 16 15 N -0.69 -9.86 5.36 -51.85 -0.28 -10.13 16 16 C 0.44 6.11 7.64 -155.28 -1.19 4.93 16 17 C -0.25 -3.28 9.17 -39.65 -0.36 -3.64 16 18 C 0.03 0.34 9.65 -39.29 -0.38 -0.04 16 19 C -0.28 -3.28 5.89 -104.82 -0.62 -3.90 16 20 C 0.58 6.68 8.04 -12.47 -0.10 6.58 16 21 N -0.86 -5.82 8.83 30.46 0.27 -5.55 16 22 O -0.55 -8.52 17.25 5.28 0.09 -8.43 16 23 C 0.19 2.07 10.71 -17.13 -0.18 1.88 16 24 N -0.56 -7.40 10.38 -12.14 -0.13 -7.53 16 25 C -0.12 -2.12 5.97 -24.88 -0.15 -2.26 16 26 H 0.26 6.89 8.31 -40.82 -0.34 6.56 16 27 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.07 1.66 7.17 -51.93 -0.37 1.29 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.05 0.80 8.08 -51.93 -0.42 0.38 16 31 H 0.41 5.51 8.66 -40.82 -0.35 5.16 16 32 H 0.14 1.80 6.19 -52.49 -0.32 1.48 16 33 H 0.14 1.70 7.73 -52.48 -0.41 1.29 16 34 H 0.40 1.58 6.88 -40.82 -0.28 1.30 16 35 H 0.40 2.18 8.93 -40.82 -0.36 1.82 16 36 H 0.15 1.00 6.41 -52.49 -0.34 0.66 16 37 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 1.19 7.57 -51.93 -0.39 0.79 16 LS Contribution 315.84 15.07 4.76 4.76 Total: -1.00 -30.65 315.84 -8.54 -39.19 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -4.82 Total: 6.40 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: -4.10 Total: -10.41 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: 0.55 Total: -47.10 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: 0.09 Total: -8.43 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.65 -8.54 -39.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295017361.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.439 kcal (2) G-P(sol) polarization free energy of solvation -30.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds