Wall clock time and date at job start Mon Mar 30 2020 02:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86794 * 120.00122 * 2 1 4 4 H 1.48505 * 109.47044 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47035 * 299.99351 * 3 2 1 6 6 H 1.48495 * 109.47191 * 59.99931 * 3 2 1 7 7 C 1.37883 * 119.99345 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99279 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00158 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.01671 * 59.94062 * 9 7 2 11 11 C 1.53869 * 110.03004 * 298.54124 * 9 7 2 12 12 C 1.54266 * 106.60031 * 240.66866 * 11 9 7 13 13 C 1.54894 * 104.31305 * 336.32486 * 12 11 9 14 14 H 1.08993 * 110.76071 * 279.69749 * 13 12 11 15 15 N 1.46498 * 110.75336 * 156.31761 * 13 12 11 16 16 C 1.38461 * 119.99674 * 86.46103 * 15 13 12 17 17 C 1.39399 * 119.53569 * 359.97438 * 16 15 13 18 18 C 1.36860 * 119.37411 * 179.97438 * 17 16 15 19 19 C 1.40344 * 118.49435 * 0.02562 * 18 17 16 20 20 C 1.47544 * 120.47296 * 179.97438 * 19 18 17 21 21 N 1.34776 * 119.99684 * 179.97438 * 20 19 18 22 22 O 1.21596 * 120.00066 * 359.97438 * 20 19 18 23 23 C 1.39557 * 119.05127 * 359.97438 * 19 18 17 24 24 N 1.31678 * 120.51776 * 359.73524 * 23 19 18 25 25 C 1.54266 * 110.07004 * 181.35410 * 9 7 2 26 26 H 0.96997 * 119.99897 * 0.02562 * 1 2 3 27 27 H 1.09001 * 110.02983 * 121.38618 * 11 9 7 28 28 H 1.08996 * 110.07773 * 359.97438 * 11 9 7 29 29 H 1.09002 * 110.48629 * 95.07240 * 12 11 9 30 30 H 1.08998 * 110.48744 * 217.58143 * 12 11 9 31 31 H 0.97002 * 120.00493 * 266.45577 * 15 13 12 32 32 H 1.07993 * 120.31275 * 359.97438 * 17 16 15 33 33 H 1.08003 * 120.75143 * 180.02562 * 18 17 16 34 34 H 0.97003 * 120.00170 * 359.97438 * 21 20 19 35 35 H 0.97005 * 119.99938 * 180.02562 * 21 20 19 36 36 H 1.07998 * 119.74099 * 180.02562 * 23 19 18 37 37 H 1.09005 * 110.48526 * 261.59666 * 25 9 7 38 38 H 1.09006 * 110.48581 * 24.23858 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3463 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6204 -2.5660 -0.8861 11 6 0.3887 -2.6099 1.2702 12 6 0.8844 -3.8562 2.0323 13 6 1.5460 -4.7343 0.9412 14 1 0.7924 -5.2884 0.3818 15 7 2.5293 -5.6447 1.5331 16 6 2.1255 -6.8735 2.0272 17 6 0.7808 -7.2342 1.9568 18 6 0.3854 -8.4498 2.4457 19 6 1.3566 -9.2947 3.0048 20 6 0.9785 -10.6145 3.5452 21 7 1.9191 -11.4185 4.0795 22 8 -0.1816 -10.9769 3.5086 23 6 2.6850 -8.8686 3.0422 24 7 3.0241 -7.6931 2.5554 25 6 2.2406 -3.6821 0.0354 26 1 -0.4850 0.8400 -0.0004 27 1 -0.6603 -2.7304 0.9997 28 1 0.5152 -1.7203 1.8871 29 1 1.6154 -3.5742 2.7902 30 1 0.0463 -4.3825 2.4891 31 1 3.4633 -5.3868 1.5789 32 1 0.0579 -6.5608 1.5207 33 1 -0.6506 -8.7520 2.4022 34 1 2.8447 -11.1295 4.1084 35 1 1.6707 -12.2863 4.4345 36 1 3.4415 -9.5100 3.4695 37 1 2.3919 -4.0825 -0.9670 38 1 3.1905 -3.3719 0.4708 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295017361.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:47 Heat of formation + Delta-G solvation = -36.178777 kcal Electronic energy + Delta-G solvation = -20341.789333 eV Core-core repulsion = 17182.206391 eV Total energy + Delta-G solvation = -3159.582941 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.60077 -40.10035 -39.08314 -36.04618 -34.73974 -34.07112 -33.41973 -30.83615 -29.93858 -28.37282 -25.99758 -24.58463 -24.49086 -21.91875 -21.23073 -20.90441 -19.21956 -18.59171 -18.41383 -17.77199 -17.06274 -16.57130 -16.47835 -15.92428 -15.81784 -15.65176 -15.07587 -14.89419 -14.43173 -14.15806 -14.00269 -13.62760 -13.60285 -13.00086 -12.71869 -12.60439 -12.33432 -12.16795 -11.74330 -11.56133 -11.33311 -11.14954 -11.08130 -10.83756 -10.70796 -10.64221 -10.45954 -10.43583 -8.73314 -8.11561 -6.20614 -0.10071 0.37574 1.39987 1.43089 1.52901 1.94514 2.07764 2.44178 2.65134 2.97909 3.20025 3.54732 3.83535 3.88150 3.92832 4.01831 4.07207 4.18947 4.31732 4.64229 4.72502 4.79825 4.85671 4.96774 4.98663 5.04527 5.14854 5.20772 5.38406 5.45274 5.54977 5.68468 5.91331 5.94339 5.95222 6.03144 6.40098 6.48808 6.55653 6.91733 7.07662 7.37600 7.46868 8.97099 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.051818 B = 0.003109 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.225185 B = 9003.121397 C = 9316.842419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.010 3.990 3 Si 0.949 3.051 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.038 3.962 10 H 0.001 0.999 11 C -0.083 4.083 12 C -0.124 4.124 13 C 0.155 3.845 14 H 0.096 0.904 15 N -0.694 5.694 16 C 0.423 3.577 17 C -0.255 4.255 18 C 0.019 3.981 19 C -0.280 4.280 20 C 0.577 3.423 21 N -0.831 5.831 22 O -0.597 6.597 23 C 0.200 3.800 24 N -0.567 5.567 25 C -0.106 4.106 26 H 0.259 0.741 27 H 0.029 0.971 28 H 0.033 0.967 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.409 0.591 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.416 0.584 35 H 0.413 0.587 36 H 0.197 0.803 37 H 0.063 0.937 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.521 -19.055 6.952 21.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.188 4.188 3 Si 0.775 3.225 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.565 4.565 8 H 0.073 0.927 9 C 0.019 3.981 10 H 0.019 0.981 11 C -0.122 4.122 12 C -0.163 4.163 13 C 0.049 3.951 14 H 0.114 0.886 15 N -0.321 5.321 16 C 0.186 3.814 17 C -0.280 4.280 18 C -0.007 4.007 19 C -0.289 4.289 20 C 0.364 3.636 21 N -0.395 5.395 22 O -0.479 6.479 23 C 0.039 3.961 24 N -0.285 5.285 25 C -0.144 4.144 26 H 0.068 0.932 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.246 0.754 32 H 0.160 0.840 33 H 0.159 0.841 34 H 0.248 0.752 35 H 0.245 0.755 36 H 0.213 0.787 37 H 0.082 0.918 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.354 -18.568 6.761 20.757 hybrid contribution -0.191 1.055 -0.004 1.072 sum 6.164 -17.513 6.757 19.757 Atomic orbital electron populations 1.70101 1.07143 1.27039 1.51496 1.25724 0.95615 1.02303 0.95180 0.85641 0.79275 0.80181 0.77384 1.18995 1.20916 1.20975 1.21639 0.92960 0.91822 1.50055 0.92701 1.19200 0.92933 0.92420 0.93522 0.98100 1.21806 0.97460 0.95341 0.97553 1.22748 0.99850 0.96115 0.97620 1.22091 0.90508 0.88888 0.93571 0.88635 1.44701 1.11604 1.13789 1.61978 1.18774 0.89506 0.86030 0.87110 1.21291 0.95699 1.00133 1.10877 1.21237 1.00152 0.90883 0.88423 1.20529 0.96319 0.97983 1.14104 1.18017 0.84806 0.84344 0.76405 1.43518 1.11629 1.21371 1.62979 1.90789 1.20892 1.76320 1.59943 1.23126 0.93663 0.90247 0.89111 1.67317 1.36669 1.06402 1.18160 1.22596 0.99048 0.94442 0.98320 0.93207 0.95224 0.94847 0.92277 0.91422 0.75406 0.83951 0.84062 0.75182 0.75498 0.78679 0.91816 0.91687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.28 12.33 21.45 0.26 -52.02 16 2 C 0.01 0.57 5.07 84.65 0.43 1.00 16 3 Si 0.95 42.76 29.54 68.60 2.03 44.79 16 4 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 6 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 7 C -0.53 -27.70 8.34 25.60 0.21 -27.49 16 8 H 0.05 2.83 7.55 -2.91 -0.02 2.80 16 9 C 0.04 1.78 2.84 -10.82 -0.03 1.75 16 10 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 11 C -0.08 -3.66 5.55 31.32 0.17 -3.49 16 12 C -0.12 -4.23 6.50 31.67 0.21 -4.03 16 13 C 0.15 4.66 2.79 46.41 0.13 4.79 16 14 H 0.10 2.73 6.62 -2.39 -0.02 2.71 16 15 N -0.69 -18.43 5.36 -317.96 -1.71 -20.13 16 16 C 0.42 11.03 7.64 133.25 1.02 12.05 16 17 C -0.26 -6.39 9.17 22.23 0.20 -6.19 16 18 C 0.02 0.45 9.65 22.46 0.22 0.67 16 19 C -0.28 -5.95 5.89 -19.99 -0.12 -6.06 16 20 C 0.58 12.03 8.04 86.70 0.70 12.73 16 21 N -0.83 -8.52 8.83 -175.80 -1.55 -10.07 16 22 O -0.60 -17.82 17.25 -4.02 -0.07 -17.89 16 23 C 0.20 3.60 10.71 85.03 0.91 4.51 16 24 N -0.57 -13.50 10.38 -192.33 -2.00 -15.49 16 25 C -0.11 -3.80 5.97 31.79 0.19 -3.61 16 26 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 27 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.03 1.68 7.17 -2.39 -0.02 1.66 16 29 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.07 2.08 8.08 -2.39 -0.02 2.06 16 31 H 0.41 10.32 8.66 -92.71 -0.80 9.52 16 32 H 0.14 3.45 6.19 -2.91 -0.02 3.43 16 33 H 0.14 3.33 7.73 -2.91 -0.02 3.31 16 34 H 0.42 1.48 6.88 -92.71 -0.64 0.84 16 35 H 0.41 3.18 8.93 -92.70 -0.83 2.35 16 36 H 0.20 1.60 6.41 -2.91 -0.02 1.58 16 37 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 38 H 0.06 2.32 7.57 -2.38 -0.02 2.31 16 Total: -1.00 -67.56 315.84 0.06 -67.50 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -1.15 Total: 16.68 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: 4.24 Total: -13.36 kcal Atomic # 7 Polarization: -92.73 SS G_CDS: -4.99 Total: -97.72 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.07 Total: -17.89 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -67.56 0.06 -67.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295017361.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.318 kcal (2) G-P(sol) polarization free energy of solvation -67.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds