Wall clock time and date at job start Mon Mar 30 2020 01:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99493 * 2 1 4 4 H 1.48500 * 109.46936 * 269.99859 * 3 2 1 5 5 H 1.48498 * 109.47330 * 30.00156 * 3 2 1 6 6 H 1.48501 * 109.46960 * 150.00216 * 3 2 1 7 7 C 1.37868 * 120.00354 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00244 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00115 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.46957 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.46800 * 180.02562 * 10 9 7 12 12 C 1.34781 * 120.00225 * 179.97438 * 11 10 9 13 13 O 1.21584 * 119.99205 * 0.02562 * 12 11 10 14 14 N 1.34772 * 120.00461 * 179.97438 * 12 11 10 15 15 C 1.39391 * 119.99920 * 185.09561 * 14 12 11 16 16 C 1.39051 * 119.68099 * 174.91093 * 15 14 12 17 17 C 1.38284 * 118.92454 * 179.97438 * 16 15 14 18 18 C 1.38944 * 118.66282 * 0.02562 * 17 16 15 19 19 C 1.38061 * 119.47140 * 0.02562 * 18 17 16 20 20 N 1.32169 * 119.68967 * 354.88604 * 15 14 12 21 21 C 1.51493 * 109.60769 * 180.02562 * 19 18 17 22 22 C 1.54591 * 105.22711 * 17.22483 * 21 19 18 23 23 C 1.51253 * 130.57073 * 180.02562 * 18 17 16 24 24 H 0.96994 * 119.99930 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.46930 * 60.00278 * 9 7 2 26 26 H 1.09000 * 109.47138 * 299.99939 * 9 7 2 27 27 H 1.08995 * 109.47200 * 60.00288 * 10 9 7 28 28 H 1.09000 * 109.47021 * 299.99856 * 10 9 7 29 29 H 0.97001 * 120.00548 * 359.97438 * 11 10 9 30 30 H 0.97003 * 119.99622 * 5.09429 * 14 12 11 31 31 H 1.07997 * 120.54036 * 359.94877 * 16 15 14 32 32 H 1.08003 * 120.66591 * 179.97438 * 17 16 15 33 33 H 1.08999 * 110.29794 * 136.14673 * 21 19 18 34 34 H 1.09001 * 110.29238 * 258.17641 * 21 19 18 35 35 H 1.09001 * 110.91042 * 215.45257 * 22 21 19 36 36 H 1.08999 * 110.85952 * 91.80975 * 22 21 19 37 37 H 1.09000 * 110.31572 * 281.71707 * 23 18 17 38 38 H 1.08995 * 110.31666 * 43.80067 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0014 9 6 3.5117 -1.1939 -0.0011 10 6 4.0217 -2.6364 -0.0023 11 7 5.4866 -2.6363 -0.0022 12 6 6.1607 -3.8035 -0.0026 13 8 5.5527 -4.8564 -0.0035 14 7 7.5084 -3.8034 -0.0031 15 6 8.2053 -5.0058 -0.1108 16 6 9.5917 -4.9909 -0.2175 17 6 10.2673 -6.1928 -0.3229 18 6 9.5333 -7.3726 -0.3187 19 6 8.1581 -7.3165 -0.2108 20 7 7.5423 -6.1491 -0.1099 21 6 7.5891 -8.7204 -0.2285 22 6 8.7863 -9.6477 0.0826 23 6 9.9852 -8.8127 -0.4170 24 1 -0.4850 0.8400 0.0004 25 1 3.8753 -0.6803 0.8888 26 1 3.8746 -0.6798 -0.8911 27 1 3.6581 -3.1496 -0.8924 28 1 3.6587 -3.1508 0.8875 29 1 5.9717 -1.7963 -0.0019 30 1 7.9934 -2.9666 0.0714 31 1 10.1320 -4.0558 -0.2185 32 1 11.3438 -6.2140 -0.4077 33 1 6.8203 -8.8265 0.5369 34 1 7.1772 -8.9490 -1.2114 35 1 8.7083 -10.5829 -0.4718 36 1 8.8634 -9.8359 1.1534 37 1 10.2192 -9.0662 -1.4509 38 1 10.8541 -8.9809 0.2192 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296827818.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:36 Heat of formation + Delta-G solvation = 11.465512 kcal Electronic energy + Delta-G solvation = -20081.429106 eV Core-core repulsion = 16923.912176 eV Total energy + Delta-G solvation = -3157.516930 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.04290 -39.55273 -36.78215 -34.90447 -33.99922 -32.80353 -32.61035 -30.18858 -28.59240 -27.75043 -25.06273 -23.60211 -21.98595 -21.04078 -20.81563 -20.65662 -18.28829 -17.47665 -16.80146 -16.33199 -15.99558 -15.43407 -15.13749 -14.63868 -14.21412 -14.00655 -13.94588 -13.52390 -13.21703 -13.07329 -13.00614 -12.59874 -12.44038 -11.93311 -11.50920 -11.44955 -11.39653 -11.18226 -10.45900 -10.29205 -10.24512 -10.01673 -9.89793 -9.75901 -9.33472 -8.89493 -8.63756 -8.53514 -8.04836 -6.10173 -4.10263 1.02440 1.26335 2.61464 3.25445 3.32839 3.34154 3.37145 3.80122 3.92731 4.28349 4.38128 4.41871 4.67473 4.75926 4.83192 4.89588 4.99888 5.22628 5.29083 5.46322 5.50617 5.57393 5.68335 5.76256 5.87557 5.92117 6.04310 6.11174 6.24433 6.25107 6.58211 6.70060 6.76963 6.92709 7.20410 7.25025 7.67711 7.93495 8.31441 8.46448 8.87568 8.94840 9.49764 11.02919 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.042554 B = 0.003009 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.828942 B = 9302.238436 C = 9913.728706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.522 4.522 8 H 0.076 0.924 9 C -0.021 4.021 10 C 0.149 3.851 11 N -0.739 5.739 12 C 0.686 3.314 13 O -0.530 6.530 14 N -0.674 5.674 15 C 0.392 3.608 16 C -0.217 4.217 17 C -0.036 4.036 18 C -0.197 4.197 19 C 0.157 3.843 20 N -0.469 5.469 21 C -0.072 4.072 22 C -0.118 4.118 23 C -0.071 4.071 24 H 0.265 0.735 25 H 0.022 0.978 26 H 0.017 0.983 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.391 0.609 30 H 0.411 0.589 31 H 0.136 0.864 32 H 0.133 0.867 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.991 -13.221 -0.559 28.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.560 4.560 8 H 0.095 0.905 9 C -0.059 4.059 10 C 0.026 3.974 11 N -0.394 5.394 12 C 0.385 3.615 13 O -0.401 6.401 14 N -0.322 5.322 15 C 0.159 3.841 16 C -0.241 4.241 17 C -0.061 4.061 18 C -0.200 4.200 19 C 0.018 3.982 20 N -0.182 5.182 21 C -0.110 4.110 22 C -0.156 4.156 23 C -0.108 4.108 24 H 0.074 0.926 25 H 0.040 0.960 26 H 0.036 0.964 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.224 0.776 30 H 0.247 0.753 31 H 0.154 0.846 32 H 0.151 0.849 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 23.180 -13.962 -0.490 27.064 hybrid contribution 1.703 2.066 -0.064 2.678 sum 24.882 -11.895 -0.553 27.585 Atomic orbital electron populations 1.69905 1.06284 1.27038 1.50458 1.25000 0.94767 0.99133 0.94405 0.86743 0.80243 0.83554 0.78463 1.20250 1.21290 1.19109 1.20915 0.88604 0.94948 1.51580 0.90542 1.19799 0.97968 0.91333 0.96809 1.21419 0.74299 0.99981 1.01690 1.45591 1.09058 1.05964 1.78777 1.16148 0.80752 0.85405 0.79174 1.91038 1.66179 1.29652 1.53204 1.42860 1.06370 1.07260 1.75757 1.17936 0.87304 0.85587 0.93265 1.21298 0.92726 0.99582 1.10454 1.20720 0.99872 0.90408 0.95141 1.21332 0.95861 0.96030 1.06806 1.21712 0.90784 0.93132 0.92617 1.66759 1.39949 0.96225 1.15317 1.21055 0.98441 0.87880 1.03643 1.22364 0.93601 0.97843 1.01818 1.20852 0.98446 0.89799 1.01726 0.92551 0.95993 0.96444 0.91989 0.91964 0.77606 0.75255 0.84592 0.84902 0.89522 0.89195 0.90057 0.90708 0.90368 0.90853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.50 13.96 55.43 0.77 -26.73 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.08 27.47 -169.99 -4.67 16.41 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -5.99 6.54 56.52 0.37 -5.62 16 7 C -0.52 -14.73 9.66 -34.44 -0.33 -15.07 16 8 H 0.08 2.34 7.99 -52.49 -0.42 1.92 16 9 C -0.02 -0.49 4.16 -27.88 -0.12 -0.60 16 10 C 0.15 3.11 5.61 -4.04 -0.02 3.08 16 11 N -0.74 -12.52 5.56 -65.23 -0.36 -12.88 16 12 C 0.69 12.29 8.52 -86.92 -0.74 11.55 16 13 O -0.53 -11.88 14.61 5.29 0.08 -11.80 16 14 N -0.67 -9.13 5.39 -15.85 -0.09 -9.21 16 15 C 0.39 5.62 7.42 -154.87 -1.15 4.47 16 16 C -0.22 -2.25 9.95 -39.26 -0.39 -2.64 16 17 C -0.04 -0.34 10.16 -39.30 -0.40 -0.74 16 18 C -0.20 -2.08 6.16 -104.15 -0.64 -2.73 16 19 C 0.16 2.13 7.31 -82.04 -0.60 1.53 16 20 N -0.47 -7.92 7.87 -8.31 -0.07 -7.99 16 21 C -0.07 -0.75 6.78 -26.66 -0.18 -0.94 16 22 C -0.12 -0.84 7.10 -25.16 -0.18 -1.02 16 23 C -0.07 -0.52 6.76 -26.87 -0.18 -0.70 16 24 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 25 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 26 H 0.02 0.39 7.57 -51.93 -0.39 -0.01 16 27 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 28 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.39 5.30 8.49 -40.82 -0.35 4.95 16 30 H 0.41 3.73 8.72 -40.82 -0.36 3.38 16 31 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 32 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 33 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 320.21 15.07 4.83 4.83 Total: -1.00 -36.04 320.21 -9.82 -45.87 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -5.28 Total: 3.43 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -5.03 Total: -1.91 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: 0.26 Total: -56.81 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.08 Total: -11.80 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.67 Total: 16.41 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -36.04 -9.82 -45.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296827818.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.331 kcal (2) G-P(sol) polarization free energy of solvation -36.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds