Wall clock time and date at job start Mon Mar 30 2020 01:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99493 * 2 1 4 4 H 1.48500 * 109.46936 * 269.99859 * 3 2 1 5 5 H 1.48498 * 109.47330 * 30.00156 * 3 2 1 6 6 H 1.48501 * 109.46960 * 150.00216 * 3 2 1 7 7 C 1.37868 * 120.00354 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00244 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00115 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.46957 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.46800 * 180.02562 * 10 9 7 12 12 C 1.34781 * 120.00225 * 179.97438 * 11 10 9 13 13 O 1.21584 * 119.99205 * 0.02562 * 12 11 10 14 14 N 1.34772 * 120.00461 * 179.97438 * 12 11 10 15 15 C 1.39391 * 119.99920 * 185.09561 * 14 12 11 16 16 C 1.39051 * 119.68099 * 174.91093 * 15 14 12 17 17 C 1.38284 * 118.92454 * 179.97438 * 16 15 14 18 18 C 1.38944 * 118.66282 * 0.02562 * 17 16 15 19 19 C 1.38061 * 119.47140 * 0.02562 * 18 17 16 20 20 N 1.32169 * 119.68967 * 354.88604 * 15 14 12 21 21 C 1.51493 * 109.60769 * 180.02562 * 19 18 17 22 22 C 1.54591 * 105.22711 * 17.22483 * 21 19 18 23 23 C 1.51253 * 130.57073 * 180.02562 * 18 17 16 24 24 H 0.96994 * 119.99930 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.46930 * 60.00278 * 9 7 2 26 26 H 1.09000 * 109.47138 * 299.99939 * 9 7 2 27 27 H 1.08995 * 109.47200 * 60.00288 * 10 9 7 28 28 H 1.09000 * 109.47021 * 299.99856 * 10 9 7 29 29 H 0.97001 * 120.00548 * 359.97438 * 11 10 9 30 30 H 0.97003 * 119.99622 * 5.09429 * 14 12 11 31 31 H 1.07997 * 120.54036 * 359.94877 * 16 15 14 32 32 H 1.08003 * 120.66591 * 179.97438 * 17 16 15 33 33 H 1.08999 * 110.29794 * 136.14673 * 21 19 18 34 34 H 1.09001 * 110.29238 * 258.17641 * 21 19 18 35 35 H 1.09001 * 110.91042 * 215.45257 * 22 21 19 36 36 H 1.08999 * 110.85952 * 91.80975 * 22 21 19 37 37 H 1.09000 * 110.31572 * 281.71707 * 23 18 17 38 38 H 1.08995 * 110.31666 * 43.80067 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0014 9 6 3.5117 -1.1939 -0.0011 10 6 4.0217 -2.6364 -0.0023 11 7 5.4866 -2.6363 -0.0022 12 6 6.1607 -3.8035 -0.0026 13 8 5.5527 -4.8564 -0.0035 14 7 7.5084 -3.8034 -0.0031 15 6 8.2053 -5.0058 -0.1108 16 6 9.5917 -4.9909 -0.2175 17 6 10.2673 -6.1928 -0.3229 18 6 9.5333 -7.3726 -0.3187 19 6 8.1581 -7.3165 -0.2108 20 7 7.5423 -6.1491 -0.1099 21 6 7.5891 -8.7204 -0.2285 22 6 8.7863 -9.6477 0.0826 23 6 9.9852 -8.8127 -0.4170 24 1 -0.4850 0.8400 0.0004 25 1 3.8753 -0.6803 0.8888 26 1 3.8746 -0.6798 -0.8911 27 1 3.6581 -3.1496 -0.8924 28 1 3.6587 -3.1508 0.8875 29 1 5.9717 -1.7963 -0.0019 30 1 7.9934 -2.9666 0.0714 31 1 10.1320 -4.0558 -0.2185 32 1 11.3438 -6.2140 -0.4077 33 1 6.8203 -8.8265 0.5369 34 1 7.1772 -8.9490 -1.2114 35 1 8.7083 -10.5829 -0.4718 36 1 8.8634 -9.8359 1.1534 37 1 10.2192 -9.0662 -1.4509 38 1 10.8541 -8.9809 0.2192 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296827818.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:36 Heat of formation + Delta-G solvation = -14.198698 kcal Electronic energy + Delta-G solvation = -20082.541990 eV Core-core repulsion = 16923.912176 eV Total energy + Delta-G solvation = -3158.629814 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.02167 -40.76599 -37.76703 -36.52274 -35.17786 -34.68984 -33.54180 -31.98474 -29.51656 -28.54157 -26.82209 -24.65288 -22.98653 -22.58306 -22.01369 -21.65942 -19.60532 -18.95196 -18.48776 -17.25651 -16.95630 -16.57888 -16.31918 -15.99992 -15.89557 -15.40814 -15.25544 -14.69176 -14.55395 -14.39086 -13.77208 -13.72082 -13.35863 -13.25812 -13.07110 -12.61726 -12.23623 -12.18737 -12.08764 -12.03742 -11.76042 -11.57918 -11.40640 -11.23018 -10.79183 -10.65561 -10.08981 -9.92887 -8.99033 -8.30267 -6.38030 0.13802 0.43487 1.38983 1.42155 1.44254 1.53497 2.08444 2.36972 2.85011 2.93785 3.04668 3.36435 3.59993 3.94103 4.09630 4.14462 4.19128 4.30185 4.32482 4.42068 4.57198 4.73346 4.82138 4.84774 4.93045 4.99155 5.03045 5.10524 5.19305 5.31464 5.34417 5.39684 5.40366 5.41421 5.63685 5.79762 5.91712 6.22220 6.68667 6.82140 7.26323 7.28980 7.58119 8.86748 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.042554 B = 0.003009 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.828942 B = 9302.238436 C = 9913.728706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.003 3.997 3 Si 0.962 3.038 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.235 1.235 7 C -0.541 4.541 8 H 0.027 0.973 9 C -0.010 4.010 10 C 0.166 3.834 11 N -0.725 5.725 12 C 0.686 3.314 13 O -0.584 6.584 14 N -0.656 5.656 15 C 0.352 3.648 16 C -0.197 4.197 17 C -0.037 4.037 18 C -0.187 4.187 19 C 0.113 3.887 20 N -0.527 5.527 21 C -0.079 4.079 22 C -0.108 4.108 23 C -0.067 4.067 24 H 0.268 0.732 25 H 0.039 0.961 26 H 0.038 0.962 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.412 0.588 30 H 0.433 0.567 31 H 0.175 0.825 32 H 0.176 0.824 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.897 -12.146 -0.742 32.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.194 4.194 3 Si 0.784 3.216 4 H -0.190 1.190 5 H -0.213 1.213 6 H -0.158 1.158 7 C -0.579 4.579 8 H 0.045 0.955 9 C -0.048 4.048 10 C 0.041 3.959 11 N -0.382 5.382 12 C 0.385 3.615 13 O -0.459 6.459 14 N -0.308 5.308 15 C 0.120 3.880 16 C -0.220 4.220 17 C -0.062 4.062 18 C -0.190 4.190 19 C -0.025 4.025 20 N -0.241 5.241 21 C -0.117 4.117 22 C -0.146 4.146 23 C -0.104 4.104 24 H 0.077 0.923 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.249 0.751 30 H 0.273 0.727 31 H 0.193 0.807 32 H 0.194 0.806 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.122 0.878 36 H 0.097 0.903 37 H 0.112 0.888 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 28.180 -12.886 -0.672 30.994 hybrid contribution 0.172 1.582 -0.016 1.591 sum 28.352 -11.305 -0.689 30.530 Atomic orbital electron populations 1.70084 1.08655 1.28480 1.51950 1.26114 0.95721 1.03984 0.93597 0.85497 0.79683 0.77071 0.79347 1.18951 1.21271 1.15769 1.21250 0.91602 0.93394 1.51673 0.95477 1.19636 0.94327 0.92551 0.98243 1.20895 0.76766 0.98510 0.99708 1.45140 1.07361 1.06968 1.78722 1.16304 0.82107 0.84533 0.78531 1.91007 1.67844 1.31545 1.55499 1.42499 1.04558 1.08528 1.75170 1.18368 0.88899 0.85002 0.95771 1.21707 0.90856 1.01794 1.07691 1.21275 1.01865 0.89423 0.93666 1.21827 0.94637 0.98330 1.04247 1.22204 0.92774 0.93054 0.94469 1.66563 1.42654 0.98057 1.16870 1.21189 0.99630 0.87971 1.02868 1.22381 0.91781 0.97937 1.02508 1.20960 0.98922 0.87335 1.03200 0.92297 0.94226 0.94418 0.94192 0.94146 0.75136 0.72676 0.80718 0.80643 0.91516 0.89540 0.87760 0.90305 0.88768 0.88455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.11 13.96 21.44 0.30 -59.81 16 2 C 0.00 0.16 5.47 84.65 0.46 0.62 16 3 Si 0.96 42.50 27.47 68.60 1.88 44.38 16 4 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 6 H -0.23 -9.13 6.54 99.48 0.65 -8.48 16 7 C -0.54 -31.47 9.66 25.60 0.25 -31.22 16 8 H 0.03 1.77 7.99 -2.91 -0.02 1.75 16 9 C -0.01 -0.44 4.16 29.85 0.12 -0.32 16 10 C 0.17 7.11 5.61 86.38 0.48 7.59 16 11 N -0.73 -24.17 5.56 -478.54 -2.66 -26.83 16 12 C 0.69 24.93 8.52 179.05 1.53 26.45 16 13 O -0.58 -27.68 14.61 -3.98 -0.06 -27.74 16 14 N -0.66 -17.19 5.39 -322.32 -1.74 -18.93 16 15 C 0.35 9.84 7.42 132.98 0.99 10.83 16 16 C -0.20 -3.48 9.95 22.48 0.22 -3.25 16 17 C -0.04 -0.56 10.16 22.45 0.23 -0.33 16 18 C -0.19 -3.55 6.16 -19.56 -0.12 -3.67 16 19 C 0.11 3.11 7.31 42.69 0.31 3.43 16 20 N -0.53 -18.47 7.87 -180.19 -1.42 -19.89 16 21 C -0.08 -1.71 6.78 30.64 0.21 -1.51 16 22 C -0.11 -1.35 7.10 31.61 0.22 -1.13 16 23 C -0.07 -0.76 6.76 30.50 0.21 -0.55 16 24 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 25 H 0.04 1.67 7.20 -2.39 -0.02 1.65 16 26 H 0.04 1.57 7.57 -2.39 -0.02 1.55 16 27 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.41 10.15 8.49 -92.71 -0.79 9.37 16 30 H 0.43 6.81 8.72 -92.71 -0.81 6.00 16 31 H 0.18 1.59 8.06 -2.91 -0.02 1.56 16 32 H 0.18 1.16 8.06 -2.91 -0.02 1.13 16 33 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.10 0.82 8.14 -2.39 -0.02 0.81 16 36 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -85.27 320.21 0.86 -84.41 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -0.56 Total: 17.46 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: 5.11 Total: 6.95 kcal Atomic # 7 Polarization: -119.94 SS G_CDS: -5.52 Total: -125.46 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -0.06 Total: -27.74 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 1.88 Total: 44.38 kcal Total: -85.27 0.86 -84.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296827818.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.210 kcal (2) G-P(sol) polarization free energy of solvation -85.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds