Wall clock time and date at job start Mon Mar 30 2020 01:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34713 * 116.99655 * 2 1 4 4 O 1.21472 * 120.00454 * 359.97438 * 3 2 1 5 5 C 1.47726 * 119.99431 * 179.97438 * 3 2 1 6 6 C 1.39648 * 120.15168 * 0.25093 * 5 3 2 7 7 C 1.37923 * 119.84987 * 180.25414 * 6 5 3 8 8 C 1.38395 * 120.14532 * 359.51285 * 7 6 5 9 9 C 1.38345 * 120.30507 * 0.23932 * 8 7 6 10 10 C 1.50700 * 119.92558 * 180.02562 * 9 8 7 11 11 N 1.46492 * 109.47559 * 89.99018 * 10 9 8 12 12 C 1.36942 * 119.99862 * 89.99768 * 11 10 9 13 13 H 1.07996 * 120.00510 * 304.47902 * 12 11 10 14 14 C 1.38812 * 119.99624 * 124.46905 * 12 11 10 15 15 N 1.31627 * 119.99737 * 164.67815 * 14 12 11 16 16 Si 1.86802 * 120.00427 * 344.68047 * 14 12 11 17 17 H 1.48500 * 109.47187 * 91.90060 * 16 14 12 18 18 H 1.48500 * 109.46994 * 211.90431 * 16 14 12 19 19 H 1.48497 * 109.46785 * 331.90002 * 16 14 12 20 20 C 1.46498 * 120.00316 * 270.00360 * 11 10 9 21 21 C 1.52999 * 117.49867 * 183.06960 * 20 11 10 22 22 C 1.53004 * 117.49836 * 114.41072 * 20 11 10 23 23 C 1.37963 * 120.15022 * 359.97438 * 9 8 7 24 24 H 1.09003 * 109.46841 * 59.99882 * 1 2 3 25 25 H 1.08995 * 109.47130 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47238 * 300.00312 * 1 2 3 27 27 H 1.07999 * 120.07591 * 0.02562 * 6 5 3 28 28 H 1.07997 * 119.92680 * 179.78774 * 7 6 5 29 29 H 1.08004 * 119.84423 * 180.25302 * 8 7 6 30 30 H 1.09000 * 109.46754 * 209.99760 * 10 9 8 31 31 H 1.09004 * 109.46613 * 329.99208 * 10 9 8 32 32 H 0.96993 * 119.99932 * 180.02562 * 15 14 12 33 33 H 1.08999 * 115.55023 * 328.73602 * 20 11 10 34 34 H 1.09002 * 117.50203 * 359.97438 * 21 20 11 35 35 H 1.08995 * 117.49881 * 145.02172 * 21 20 11 36 36 H 1.09003 * 117.49095 * 214.97861 * 22 20 11 37 37 H 1.08997 * 117.49838 * 359.97222 * 22 20 11 38 38 H 1.08002 * 120.07752 * 180.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2191 -0.0005 5 6 3.5388 1.2776 0.0006 6 6 4.3025 0.1084 -0.0042 7 6 5.6794 0.1878 0.0017 8 6 6.3044 1.4225 0.0021 9 6 5.5540 2.5848 0.0016 10 6 6.2435 3.9248 0.0015 11 7 6.4675 4.3587 -1.3797 12 6 5.5176 5.1040 -2.0259 13 1 4.5051 4.7369 -2.1055 14 6 5.8562 6.3316 -2.5783 15 7 5.0512 6.9072 -3.4462 16 14 7.4543 7.1668 -2.0903 17 1 8.5288 6.7704 -3.0356 18 1 7.2759 8.6404 -2.1333 19 1 7.8285 6.7534 -0.7140 20 6 7.7076 3.9951 -2.0697 21 6 7.9139 4.5384 -3.4851 22 6 7.5976 3.0559 -3.2725 23 6 4.1759 2.5199 0.0002 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 3.8160 -0.8558 -0.0087 28 1 6.2712 -0.7156 0.0015 29 1 7.3830 1.4790 0.0026 30 1 5.6181 4.6552 0.5149 31 1 7.2009 3.8408 0.5157 32 1 5.2879 7.7648 -3.8325 33 1 8.5881 3.8984 -1.4345 34 1 7.1267 5.1660 -3.9030 35 1 8.9301 4.7987 -3.7811 36 1 8.4059 2.3415 -3.4287 37 1 6.6026 2.7081 -3.5501 38 1 3.5913 3.4280 -0.0006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299595028.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:35 Heat of formation + Delta-G solvation = -5.047559 kcal Electronic energy + Delta-G solvation = -21139.641473 eV Core-core repulsion = 17949.115731 eV Total energy + Delta-G solvation = -3190.525742 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.36689 -38.74555 -37.13934 -36.26134 -33.48719 -32.16298 -31.06190 -30.15207 -27.76700 -25.81594 -23.97741 -23.31788 -21.60347 -21.46366 -20.39151 -19.74979 -17.48302 -17.02661 -16.66273 -16.24654 -15.77014 -15.23113 -14.81925 -14.54589 -14.21258 -13.65257 -13.40554 -13.37370 -13.24468 -12.70661 -12.32759 -12.15296 -11.87369 -11.77442 -11.49215 -11.06357 -10.86442 -10.76839 -10.75025 -10.45295 -10.33806 -10.29162 -9.81371 -9.51028 -9.16391 -8.72804 -8.59306 -8.30749 -6.50726 -6.02673 -3.73465 0.99130 1.69696 2.76445 2.79162 3.38128 3.47178 3.53795 4.06701 4.51105 4.85040 4.86522 4.97833 5.06295 5.10169 5.14895 5.20496 5.32730 5.40519 5.51457 5.64816 5.71846 5.83951 5.95342 6.04261 6.12240 6.24279 6.30090 6.38468 6.50081 6.55778 6.57457 6.58080 6.70381 7.01386 7.03604 7.20244 7.31107 7.89276 8.07880 8.50852 8.97496 9.61276 10.08948 11.06918 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.021709 B = 0.005380 C = 0.004747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.506292 B = 5202.805763 C = 5896.739737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.359 6.359 3 C 0.508 3.492 4 O -0.503 6.503 5 C -0.135 4.135 6 C -0.077 4.077 7 C -0.140 4.140 8 C -0.073 4.073 9 C -0.090 4.090 10 C 0.180 3.820 11 N -0.565 5.565 12 C -0.286 4.286 13 H 0.071 0.929 14 C 0.059 3.941 15 N -0.895 5.895 16 Si 0.886 3.114 17 H -0.270 1.270 18 H -0.304 1.304 19 H -0.270 1.270 20 C 0.109 3.891 21 C -0.197 4.197 22 C -0.211 4.211 23 C -0.032 4.032 24 H 0.063 0.937 25 H 0.099 0.901 26 H 0.061 0.939 27 H 0.129 0.871 28 H 0.123 0.877 29 H 0.122 0.878 30 H 0.070 0.930 31 H 0.050 0.950 32 H 0.265 0.735 33 H 0.087 0.913 34 H 0.120 0.880 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.113 -13.935 7.614 15.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.276 6.276 3 C 0.354 3.646 4 O -0.391 6.391 5 C -0.136 4.136 6 C -0.096 4.096 7 C -0.158 4.158 8 C -0.092 4.092 9 C -0.092 4.092 10 C 0.055 3.945 11 N -0.284 5.284 12 C -0.415 4.415 13 H 0.089 0.911 14 C -0.144 4.144 15 N -0.533 5.533 16 Si 0.714 3.286 17 H -0.196 1.196 18 H -0.232 1.232 19 H -0.195 1.195 20 C 0.001 3.999 21 C -0.235 4.235 22 C -0.252 4.252 23 C -0.051 4.051 24 H 0.082 0.918 25 H 0.117 0.883 26 H 0.080 0.920 27 H 0.146 0.854 28 H 0.141 0.859 29 H 0.140 0.860 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.105 0.895 34 H 0.138 0.862 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.181 -13.435 7.517 15.396 hybrid contribution 0.532 0.471 -0.140 0.724 sum 0.351 -12.963 7.377 14.920 Atomic orbital electron populations 1.23233 0.76451 1.03378 1.02654 1.86538 1.23218 1.33124 1.84752 1.21389 0.89413 0.81209 0.72627 1.90853 1.66775 1.35931 1.45553 1.19053 0.88307 0.95333 1.10925 1.21255 0.93969 0.97287 0.97060 1.21029 0.94183 0.97809 1.02790 1.21308 1.00029 0.91934 0.95880 1.20988 0.93235 0.98040 0.96986 1.20007 0.97306 0.89956 0.87278 1.43539 1.17336 1.59152 1.08362 1.18549 0.92099 0.97638 1.33228 0.91136 1.25858 0.97070 0.95919 0.95601 1.69874 1.38097 1.17690 1.27677 0.86788 0.84591 0.77246 0.80002 1.19581 1.23232 1.19496 1.21317 0.90282 1.00986 0.87273 1.23508 1.01660 0.97301 1.01046 1.23341 1.01350 0.92455 1.08029 1.21254 0.94520 0.96347 0.92939 0.91832 0.88252 0.91975 0.85352 0.85892 0.85970 0.91150 0.93165 0.92488 0.89530 0.86240 0.90746 0.91163 0.89362 0.84470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.57 101.05 1.07 1.45 16 2 O -0.36 -4.98 9.82 -40.53 -0.40 -5.37 16 3 C 0.51 8.56 7.90 34.61 0.27 8.84 16 4 O -0.50 -9.89 16.14 -19.24 -0.31 -10.20 16 5 C -0.14 -2.24 5.87 -104.98 -0.62 -2.86 16 6 C -0.08 -1.07 9.62 -39.17 -0.38 -1.45 16 7 C -0.14 -1.83 10.03 -39.64 -0.40 -2.23 16 8 C -0.07 -1.07 9.69 -39.48 -0.38 -1.45 16 9 C -0.09 -1.56 5.46 -104.68 -0.57 -2.13 16 10 C 0.18 3.43 5.83 -5.20 -0.03 3.40 16 11 N -0.57 -12.79 2.03 -167.03 -0.34 -13.13 16 12 C -0.29 -7.74 9.17 -15.06 -0.14 -7.88 16 13 H 0.07 2.15 8.06 -52.49 -0.42 1.72 16 14 C 0.06 1.63 3.74 -17.43 -0.07 1.56 16 15 N -0.89 -26.62 13.97 55.49 0.78 -25.85 16 16 Si 0.89 21.67 24.88 -169.99 -4.23 17.44 16 17 H -0.27 -6.30 5.80 56.52 0.33 -5.98 16 18 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 19 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 20 C 0.11 2.25 5.16 -67.93 -0.35 1.90 16 21 C -0.20 -4.27 6.69 -26.69 -0.18 -4.45 16 22 C -0.21 -4.17 10.36 -26.69 -0.28 -4.44 16 23 C -0.03 -0.58 9.24 -39.17 -0.36 -0.94 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.13 1.49 7.61 -52.49 -0.40 1.09 16 28 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 29 H 0.12 1.58 8.06 -52.48 -0.42 1.16 16 30 H 0.07 1.38 7.98 -51.93 -0.41 0.96 16 31 H 0.05 0.83 8.01 -51.93 -0.42 0.42 16 32 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 34 H 0.12 3.03 5.08 -51.93 -0.26 2.77 16 35 H 0.07 1.47 7.86 -51.93 -0.41 1.06 16 36 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.09 1.93 8.14 -51.93 -0.42 1.51 16 38 H 0.14 2.76 7.65 -52.49 -0.40 2.36 16 LS Contribution 321.70 15.07 4.85 4.85 Total: -1.00 -31.26 321.70 -7.38 -38.63 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -5.32 Total: 4.32 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -2.41 Total: -10.68 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 0.44 Total: -38.98 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.71 Total: -15.57 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.23 Total: 17.44 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.26 -7.38 -38.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299595028.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.585 kcal (2) G-P(sol) polarization free energy of solvation -31.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds