Wall clock time and date at job start Mon Mar 30 2020 01:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34713 * 116.99655 * 2 1 4 4 O 1.21472 * 120.00454 * 359.97438 * 3 2 1 5 5 C 1.47726 * 119.99431 * 179.97438 * 3 2 1 6 6 C 1.39648 * 120.15168 * 0.25093 * 5 3 2 7 7 C 1.37923 * 119.84987 * 180.25414 * 6 5 3 8 8 C 1.38395 * 120.14532 * 359.51285 * 7 6 5 9 9 C 1.38345 * 120.30507 * 0.23932 * 8 7 6 10 10 C 1.50700 * 119.92558 * 180.02562 * 9 8 7 11 11 N 1.46492 * 109.47559 * 89.99018 * 10 9 8 12 12 C 1.36942 * 119.99862 * 89.99768 * 11 10 9 13 13 H 1.07996 * 120.00510 * 304.47902 * 12 11 10 14 14 C 1.38812 * 119.99624 * 124.46905 * 12 11 10 15 15 N 1.31627 * 119.99737 * 164.67815 * 14 12 11 16 16 Si 1.86802 * 120.00427 * 344.68047 * 14 12 11 17 17 H 1.48500 * 109.47187 * 91.90060 * 16 14 12 18 18 H 1.48500 * 109.46994 * 211.90431 * 16 14 12 19 19 H 1.48497 * 109.46785 * 331.90002 * 16 14 12 20 20 C 1.46498 * 120.00316 * 270.00360 * 11 10 9 21 21 C 1.52999 * 117.49867 * 183.06960 * 20 11 10 22 22 C 1.53004 * 117.49836 * 114.41072 * 20 11 10 23 23 C 1.37963 * 120.15022 * 359.97438 * 9 8 7 24 24 H 1.09003 * 109.46841 * 59.99882 * 1 2 3 25 25 H 1.08995 * 109.47130 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47238 * 300.00312 * 1 2 3 27 27 H 1.07999 * 120.07591 * 0.02562 * 6 5 3 28 28 H 1.07997 * 119.92680 * 179.78774 * 7 6 5 29 29 H 1.08004 * 119.84423 * 180.25302 * 8 7 6 30 30 H 1.09000 * 109.46754 * 209.99760 * 10 9 8 31 31 H 1.09004 * 109.46613 * 329.99208 * 10 9 8 32 32 H 0.96993 * 119.99932 * 180.02562 * 15 14 12 33 33 H 1.08999 * 115.55023 * 328.73602 * 20 11 10 34 34 H 1.09002 * 117.50203 * 359.97438 * 21 20 11 35 35 H 1.08995 * 117.49881 * 145.02172 * 21 20 11 36 36 H 1.09003 * 117.49095 * 214.97861 * 22 20 11 37 37 H 1.08997 * 117.49838 * 359.97222 * 22 20 11 38 38 H 1.08002 * 120.07752 * 180.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2191 -0.0005 5 6 3.5388 1.2776 0.0006 6 6 4.3025 0.1084 -0.0042 7 6 5.6794 0.1878 0.0017 8 6 6.3044 1.4225 0.0021 9 6 5.5540 2.5848 0.0016 10 6 6.2435 3.9248 0.0015 11 7 6.4675 4.3587 -1.3797 12 6 5.5176 5.1040 -2.0259 13 1 4.5051 4.7369 -2.1055 14 6 5.8562 6.3316 -2.5783 15 7 5.0512 6.9072 -3.4462 16 14 7.4543 7.1668 -2.0903 17 1 8.5288 6.7704 -3.0356 18 1 7.2759 8.6404 -2.1333 19 1 7.8285 6.7534 -0.7140 20 6 7.7076 3.9951 -2.0697 21 6 7.9139 4.5384 -3.4851 22 6 7.5976 3.0559 -3.2725 23 6 4.1759 2.5199 0.0002 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 3.8160 -0.8558 -0.0087 28 1 6.2712 -0.7156 0.0015 29 1 7.3830 1.4790 0.0026 30 1 5.6181 4.6552 0.5149 31 1 7.2009 3.8408 0.5157 32 1 5.2879 7.7648 -3.8325 33 1 8.5881 3.8984 -1.4345 34 1 7.1267 5.1660 -3.9030 35 1 8.9301 4.7987 -3.7811 36 1 8.4059 2.3415 -3.4287 37 1 6.6026 2.7081 -3.5501 38 1 3.5913 3.4280 -0.0006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299595028.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:35 Heat of formation + Delta-G solvation = -23.347530 kcal Electronic energy + Delta-G solvation = -21140.435019 eV Core-core repulsion = 17949.115731 eV Total energy + Delta-G solvation = -3191.319288 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.63252 -40.04093 -38.75729 -37.53521 -35.05478 -34.12736 -32.33059 -31.66494 -28.78422 -27.49831 -25.37086 -24.87047 -23.20552 -22.76706 -21.69903 -21.46983 -18.94456 -18.56687 -18.13900 -17.44122 -16.93289 -16.81237 -16.68830 -15.94673 -15.48642 -15.25359 -15.04233 -14.54871 -14.52392 -14.13991 -14.05178 -13.57011 -13.21750 -13.09546 -12.97951 -12.60622 -12.49672 -12.30380 -12.12080 -11.92400 -11.88211 -11.78234 -11.61521 -11.26121 -10.84329 -10.51108 -9.93413 -9.71402 -8.39197 -8.12975 -5.87363 -0.26038 0.47863 1.43915 1.47025 1.49562 1.59876 1.64410 2.47288 2.80253 3.02887 3.34578 3.44568 3.71001 3.94425 4.03935 4.24609 4.27586 4.28297 4.29590 4.34259 4.44511 4.47487 4.53334 4.62545 4.74466 4.94937 4.97031 5.03091 5.04625 5.11576 5.17676 5.36238 5.37438 5.50122 5.59686 5.73671 5.99104 6.01358 6.29329 6.62573 7.11344 7.58000 8.06917 8.96813 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.021709 B = 0.005380 C = 0.004747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.506292 B = 5202.805763 C = 5896.739737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.351 6.351 3 C 0.508 3.492 4 O -0.547 6.547 5 C -0.154 4.154 6 C -0.065 4.065 7 C -0.126 4.126 8 C -0.064 4.064 9 C -0.106 4.106 10 C 0.178 3.822 11 N -0.577 5.577 12 C -0.273 4.273 13 H 0.011 0.989 14 C 0.009 3.991 15 N -0.950 5.950 16 Si 0.951 3.049 17 H -0.246 1.246 18 H -0.318 1.318 19 H -0.255 1.255 20 C 0.106 3.894 21 C -0.217 4.217 22 C -0.191 4.191 23 C -0.061 4.061 24 H 0.055 0.945 25 H 0.143 0.857 26 H 0.062 0.938 27 H 0.158 0.842 28 H 0.170 0.830 29 H 0.153 0.847 30 H 0.046 0.954 31 H 0.089 0.911 32 H 0.264 0.736 33 H 0.131 0.869 34 H 0.074 0.926 35 H 0.101 0.899 36 H 0.114 0.886 37 H 0.055 0.945 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.705 -17.396 8.799 19.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.267 6.267 3 C 0.355 3.645 4 O -0.439 6.439 5 C -0.155 4.155 6 C -0.083 4.083 7 C -0.143 4.143 8 C -0.083 4.083 9 C -0.109 4.109 10 C 0.053 3.947 11 N -0.296 5.296 12 C -0.403 4.403 13 H 0.029 0.971 14 C -0.189 4.189 15 N -0.592 5.592 16 Si 0.776 3.224 17 H -0.170 1.170 18 H -0.247 1.247 19 H -0.179 1.179 20 C 0.000 4.000 21 C -0.255 4.255 22 C -0.231 4.231 23 C -0.081 4.081 24 H 0.074 0.926 25 H 0.161 0.839 26 H 0.081 0.919 27 H 0.176 0.824 28 H 0.188 0.812 29 H 0.171 0.829 30 H 0.065 0.935 31 H 0.107 0.893 32 H 0.073 0.927 33 H 0.148 0.852 34 H 0.093 0.907 35 H 0.119 0.881 36 H 0.133 0.867 37 H 0.073 0.927 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.424 -16.960 8.727 19.378 hybrid contribution -0.733 1.366 -0.509 1.631 sum 2.691 -15.594 8.218 17.831 Atomic orbital electron populations 1.23612 0.74402 1.06127 1.02370 1.86516 1.25170 1.31107 1.83950 1.21611 0.89796 0.81468 0.71614 1.90829 1.67718 1.37534 1.47813 1.19162 0.88483 0.95776 1.12098 1.21635 0.94616 0.97097 0.94923 1.21532 0.93873 0.98836 1.00061 1.21634 1.01350 0.91189 0.94086 1.20803 0.92641 0.98492 0.98948 1.20088 0.98897 0.90339 0.85341 1.43609 1.17152 1.59159 1.09709 1.18167 0.91044 0.98098 1.32961 0.97106 1.26514 1.00725 0.96389 0.95305 1.70024 1.40929 1.18309 1.29915 0.85751 0.80971 0.75017 0.80633 1.17006 1.24706 1.17908 1.21653 0.90208 1.00752 0.87430 1.23432 1.01621 0.98209 1.02209 1.23276 1.01044 0.92155 1.06657 1.21063 0.95351 0.95879 0.95767 0.92632 0.83865 0.91922 0.82428 0.81240 0.82886 0.93512 0.89298 0.92721 0.85201 0.90726 0.88054 0.86740 0.92664 0.88761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.57 113.37 1.20 1.75 16 2 O -0.35 -9.47 9.82 -56.23 -0.55 -10.02 16 3 C 0.51 17.80 7.90 70.33 0.56 18.36 16 4 O -0.55 -23.34 16.14 19.93 0.32 -23.01 16 5 C -0.15 -5.19 5.87 -20.10 -0.12 -5.31 16 6 C -0.06 -1.60 9.62 22.54 0.22 -1.38 16 7 C -0.13 -2.65 10.03 22.23 0.22 -2.43 16 8 C -0.06 -1.63 9.69 22.33 0.22 -1.41 16 9 C -0.11 -3.66 5.46 -19.90 -0.11 -3.77 16 10 C 0.18 6.68 5.83 85.63 0.50 7.18 16 11 N -0.58 -25.98 2.03 -682.35 -1.39 -27.36 16 12 C -0.27 -15.59 9.17 84.03 0.77 -14.82 16 13 H 0.01 0.76 8.06 -2.91 -0.02 0.73 16 14 C 0.01 0.50 3.74 84.86 0.32 0.82 16 15 N -0.95 -60.14 13.97 21.65 0.30 -59.84 16 16 Si 0.95 45.15 24.88 68.60 1.71 46.86 16 17 H -0.25 -10.62 5.80 99.48 0.58 -10.05 16 18 H -0.32 -15.72 7.11 99.48 0.71 -15.01 16 19 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 20 C 0.11 4.04 5.16 44.99 0.23 4.27 16 21 C -0.22 -8.92 6.69 30.62 0.20 -8.72 16 22 C -0.19 -6.97 10.36 30.62 0.32 -6.66 16 23 C -0.06 -2.40 9.24 22.54 0.21 -2.19 16 24 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.14 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.16 2.97 7.61 -2.91 -0.02 2.95 16 28 H 0.17 2.13 8.06 -2.91 -0.02 2.11 16 29 H 0.15 2.98 8.06 -2.91 -0.02 2.95 16 30 H 0.05 1.92 7.98 -2.39 -0.02 1.90 16 31 H 0.09 2.64 8.01 -2.38 -0.02 2.62 16 32 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 33 H 0.13 3.93 8.14 -2.39 -0.02 3.91 16 34 H 0.07 3.83 5.08 -2.39 -0.01 3.82 16 35 H 0.10 3.59 7.86 -2.39 -0.02 3.58 16 36 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 37 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.09 4.37 7.65 -2.91 -0.02 4.35 16 Total: -1.00 -76.01 321.70 6.04 -69.97 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 0.92 Total: 17.71 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: 4.73 Total: -14.29 kcal Atomic # 7 Polarization: -86.12 SS G_CDS: -1.08 Total: -87.20 kcal Atomic # 8 Polarization: -32.80 SS G_CDS: -0.23 Total: -33.04 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.71 Total: 46.86 kcal Total: -76.01 6.04 -69.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299595028.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.619 kcal (2) G-P(sol) polarization free energy of solvation -76.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds