Wall clock time and date at job start Mon Mar 30 2020 01:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42095 * 108.58109 * 2 1 4 4 O 1.42105 * 108.57797 * 228.97556 * 2 1 3 5 5 C 1.81402 * 101.92112 * 114.49035 * 2 1 3 6 6 C 1.52998 * 109.47014 * 179.97438 * 5 2 1 7 7 H 1.09000 * 109.51037 * 55.07743 * 6 5 2 8 8 C 1.53125 * 109.50529 * 294.99605 * 6 5 2 9 9 C 1.53120 * 109.16323 * 182.40677 * 8 6 5 10 10 C 1.53034 * 109.27934 * 57.65221 * 9 8 6 11 11 N 1.46850 * 109.52635 * 300.82407 * 10 9 8 12 12 C 1.46896 * 110.99968 * 185.83765 * 11 10 9 13 13 C 1.52997 * 109.47114 * 66.04365 * 12 11 10 14 14 C 1.50706 * 109.47238 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99515 * 0.02562 * 14 13 12 16 16 C 1.37870 * 120.00176 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00200 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 120.00139 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47145 * 89.99836 * 18 16 14 20 20 H 1.48496 * 109.47547 * 210.00333 * 18 16 14 21 21 H 1.48499 * 109.47030 * 330.00237 * 18 16 14 22 22 C 1.46845 * 111.19675 * 61.73851 * 11 10 9 23 23 H 1.09004 * 109.46836 * 305.51364 * 1 2 3 24 24 H 1.08996 * 109.47150 * 65.50775 * 1 2 3 25 25 H 1.08994 * 109.47285 * 185.51517 * 1 2 3 26 26 H 1.08995 * 109.47425 * 59.99987 * 5 2 1 27 27 H 1.08997 * 109.46952 * 299.99416 * 5 2 1 28 28 H 1.08997 * 109.51790 * 62.50112 * 8 6 5 29 29 H 1.08993 * 109.52193 * 302.31481 * 8 6 5 30 30 H 1.09003 * 109.50242 * 297.71588 * 9 8 6 31 31 H 1.08991 * 109.50180 * 177.59977 * 9 8 6 32 32 H 1.08995 * 109.46254 * 180.80141 * 10 9 8 33 33 H 1.09004 * 109.45711 * 60.83653 * 10 9 8 34 34 H 1.09001 * 109.47271 * 306.04634 * 12 11 10 35 35 H 1.09004 * 109.47041 * 186.04481 * 12 11 10 36 36 H 1.09001 * 109.46832 * 59.99999 * 13 12 11 37 37 H 1.09000 * 109.47611 * 300.00296 * 13 12 11 38 38 H 0.96999 * 120.00061 * 179.97438 * 17 16 14 39 39 H 1.09004 * 109.46600 * 58.27717 * 22 11 10 40 40 H 1.09000 * 109.46136 * 178.24222 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1887 -0.7358 1.6152 6 6 3.7054 -0.8197 1.7979 7 1 4.1439 0.1686 1.6598 8 6 4.2918 -1.7877 0.7665 9 6 5.8008 -1.9119 0.9947 10 6 6.0577 -2.3888 2.4260 11 7 5.4784 -1.4290 3.3746 12 6 5.8249 -1.7816 4.7579 13 6 7.3336 -1.6283 4.9606 14 6 7.6891 -1.9893 6.3799 15 1 6.9161 -2.2978 7.0683 16 6 9.0008 -1.9260 6.7996 17 7 9.3110 -2.2416 8.0380 18 14 10.3378 -1.3932 5.6087 19 1 10.5043 0.0808 5.6786 20 1 11.6170 -2.0537 5.9726 21 1 9.9548 -1.7831 4.2279 22 6 4.0232 -1.3283 3.2059 23 1 -0.3633 0.5970 0.8365 24 1 -0.3633 0.4260 -0.9351 25 1 -0.3633 -1.0228 0.0988 26 1 1.7610 -1.7370 1.6664 27 1 1.7611 -0.1172 2.4042 28 1 4.1054 -1.4068 -0.2376 29 1 3.8247 -2.7661 0.8784 30 1 6.2727 -0.9409 0.8445 31 1 6.2172 -2.6323 0.2908 32 1 7.1316 -2.4646 2.5962 33 1 5.5973 -3.3660 2.5713 34 1 5.5352 -2.8141 4.9531 35 1 5.2969 -1.1199 5.4446 36 1 7.6234 -0.5958 4.7653 37 1 7.8617 -2.2898 4.2739 38 1 10.2340 -2.1973 8.3331 39 1 3.5722 -2.3105 3.3476 40 1 3.6194 -0.6338 3.9426 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309281140.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:32 Heat of formation + Delta-G solvation = -78.827241 kcal Electronic energy + Delta-G solvation = -19884.327202 eV Core-core repulsion = 16826.046085 eV Total energy + Delta-G solvation = -3058.281117 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.10223 -37.23711 -36.30027 -34.96981 -32.80078 -31.93930 -30.04949 -29.89789 -27.03309 -25.32161 -22.76232 -22.28995 -19.94815 -19.66634 -19.09413 -17.03621 -16.92371 -16.37822 -16.28278 -15.26297 -14.81259 -14.45925 -14.34944 -14.06186 -13.78824 -13.63448 -13.58853 -13.02560 -12.86590 -12.61318 -12.51525 -12.24334 -12.17896 -12.06339 -11.49239 -11.36850 -11.19616 -10.99085 -10.92342 -10.72134 -10.42473 -10.24498 -10.05713 -9.71273 -9.57561 -9.18577 -8.51972 -7.85958 -6.03961 -4.02143 -0.32756 2.44914 3.31694 3.34212 3.41028 3.45878 3.68272 4.11169 4.32134 4.38610 4.47198 4.55465 4.60691 4.81068 5.03450 5.13589 5.21485 5.30835 5.33440 5.36235 5.49965 5.70093 5.79763 5.84026 5.90358 6.05445 6.10528 6.15896 6.31373 6.38750 6.47327 6.76377 7.15689 7.32740 7.59846 7.63263 7.85513 8.53223 8.99833 9.58713 11.09398 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.040415 B = 0.003583 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.649361 B = 7813.206132 C = 8037.462330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.660 4.660 2 S 2.419 3.581 3 O -0.938 6.938 4 O -0.936 6.936 5 C -0.603 4.603 6 C -0.073 4.073 7 H 0.095 0.905 8 C -0.143 4.143 9 C -0.116 4.116 10 C 0.050 3.950 11 N -0.542 5.542 12 C 0.072 3.928 13 C -0.008 4.008 14 C -0.522 4.522 15 H 0.070 0.930 16 C 0.067 3.933 17 N -0.905 5.905 18 Si 0.882 3.118 19 H -0.276 1.276 20 H -0.289 1.289 21 H -0.265 1.265 22 C 0.070 3.930 23 H 0.127 0.873 24 H 0.127 0.873 25 H 0.127 0.873 26 H 0.131 0.869 27 H 0.134 0.866 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.029 0.971 34 H 0.026 0.974 35 H 0.067 0.933 36 H 0.021 0.979 37 H 0.016 0.984 38 H 0.263 0.737 39 H 0.031 0.969 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.731 2.269 -16.776 25.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.809 4.809 2 S 2.602 3.398 3 O -0.935 6.935 4 O -0.933 6.933 5 C -0.733 4.733 6 C -0.093 4.093 7 H 0.114 0.886 8 C -0.181 4.181 9 C -0.154 4.154 10 C -0.078 4.078 11 N -0.267 5.267 12 C -0.055 4.055 13 C -0.045 4.045 14 C -0.560 4.560 15 H 0.088 0.912 16 C -0.134 4.134 17 N -0.544 5.544 18 Si 0.710 3.290 19 H -0.202 1.202 20 H -0.215 1.215 21 H -0.190 1.190 22 C -0.060 4.060 23 H 0.146 0.854 24 H 0.146 0.854 25 H 0.146 0.854 26 H 0.150 0.850 27 H 0.152 0.848 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.047 0.953 34 H 0.044 0.956 35 H 0.085 0.915 36 H 0.039 0.961 37 H 0.034 0.966 38 H 0.073 0.927 39 H 0.049 0.951 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.825 3.012 -17.412 25.100 hybrid contribution -0.323 -0.863 0.469 1.034 sum -18.148 2.149 -16.943 24.921 Atomic orbital electron populations 1.30307 1.27461 1.11453 1.11672 1.07913 0.77922 0.75953 0.78039 1.93613 1.78794 1.34506 1.86585 1.93589 1.78371 1.66865 1.54476 1.30354 1.06425 1.13795 1.22707 1.20950 0.88791 1.01912 0.97656 0.88645 1.22101 0.97129 0.99662 0.99184 1.21575 0.95111 1.02357 0.96316 1.22162 1.01124 0.92874 0.91602 1.61977 1.08963 1.49526 1.06227 1.22114 0.99657 0.98003 0.85685 1.19582 0.90739 0.97017 0.97207 1.21081 0.94280 1.45584 0.95067 0.91190 1.24997 0.98678 0.94703 0.95023 1.69914 1.18860 1.49210 1.16374 0.86738 0.81113 0.79091 0.82104 1.20203 1.21516 1.18952 1.21987 0.89660 0.99455 0.94873 0.85400 0.85403 0.85417 0.85027 0.84772 0.89684 0.91512 0.90928 0.91362 0.89754 0.95295 0.95579 0.91480 0.96078 0.96552 0.92732 0.95056 0.90671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.46 10.62 101.05 1.07 -1.39 16 2 S 2.42 18.32 5.15 -107.50 -0.55 17.76 16 3 O -0.94 -11.03 18.10 -57.83 -1.05 -12.08 16 4 O -0.94 -10.13 15.51 -57.83 -0.90 -11.03 16 5 C -0.60 -4.17 5.27 37.16 0.20 -3.97 16 6 C -0.07 -0.83 2.35 -90.54 -0.21 -1.04 16 7 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 8 C -0.14 -1.70 4.83 -26.60 -0.13 -1.82 16 9 C -0.12 -1.54 6.09 -26.65 -0.16 -1.70 16 10 C 0.05 0.80 5.29 -3.83 -0.02 0.78 16 11 N -0.54 -9.27 4.65 -234.67 -1.09 -10.36 16 12 C 0.07 1.45 4.90 -3.83 -0.02 1.43 16 13 C -0.01 -0.19 3.98 -27.88 -0.11 -0.30 16 14 C -0.52 -14.94 9.66 -34.44 -0.33 -15.28 16 15 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 16 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 17 N -0.90 -28.06 13.96 55.43 0.77 -27.28 16 18 Si 0.88 22.06 27.47 -169.99 -4.67 17.39 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 22 C 0.07 0.94 4.74 -3.83 -0.02 0.92 16 23 H 0.13 0.27 8.14 -51.92 -0.42 -0.15 16 24 H 0.13 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.13 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.13 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.13 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.08 1.00 5.58 -51.93 -0.29 0.71 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 1.48 6.22 -51.93 -0.32 1.16 16 33 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.03 0.53 8.12 -51.93 -0.42 0.11 16 35 H 0.07 1.34 7.98 -51.93 -0.41 0.93 16 36 H 0.02 0.52 7.57 -51.93 -0.39 0.12 16 37 H 0.02 0.39 5.49 -51.93 -0.29 0.11 16 38 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 39 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.96 8.01 -51.93 -0.42 0.54 16 LS Contribution 323.64 15.07 4.88 4.88 Total: -1.00 -36.39 323.64 -9.22 -45.61 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -6.78 Total: -4.39 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: 0.17 Total: -20.50 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: -0.32 Total: -37.65 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -1.94 Total: -23.10 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal Atomic # 16 Polarization: 18.32 SS G_CDS: -0.55 Total: 17.76 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -36.39 -9.22 -45.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309281140.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.218 kcal (2) G-P(sol) polarization free energy of solvation -36.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds