Wall clock time and date at job start Mon Mar 30 2020 01:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42095 * 108.58109 * 2 1 4 4 O 1.42105 * 108.57797 * 228.97556 * 2 1 3 5 5 C 1.81402 * 101.92112 * 114.49035 * 2 1 3 6 6 C 1.52998 * 109.47014 * 179.97438 * 5 2 1 7 7 H 1.09000 * 109.51037 * 55.07743 * 6 5 2 8 8 C 1.53125 * 109.50529 * 294.99605 * 6 5 2 9 9 C 1.53120 * 109.16323 * 182.40677 * 8 6 5 10 10 C 1.53034 * 109.27934 * 57.65221 * 9 8 6 11 11 N 1.46850 * 109.52635 * 300.82407 * 10 9 8 12 12 C 1.46896 * 110.99968 * 185.83765 * 11 10 9 13 13 C 1.52997 * 109.47114 * 66.04365 * 12 11 10 14 14 C 1.50706 * 109.47238 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99515 * 0.02562 * 14 13 12 16 16 C 1.37870 * 120.00176 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00200 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 120.00139 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47145 * 89.99836 * 18 16 14 20 20 H 1.48496 * 109.47547 * 210.00333 * 18 16 14 21 21 H 1.48499 * 109.47030 * 330.00237 * 18 16 14 22 22 C 1.46845 * 111.19675 * 61.73851 * 11 10 9 23 23 H 1.09004 * 109.46836 * 305.51364 * 1 2 3 24 24 H 1.08996 * 109.47150 * 65.50775 * 1 2 3 25 25 H 1.08994 * 109.47285 * 185.51517 * 1 2 3 26 26 H 1.08995 * 109.47425 * 59.99987 * 5 2 1 27 27 H 1.08997 * 109.46952 * 299.99416 * 5 2 1 28 28 H 1.08997 * 109.51790 * 62.50112 * 8 6 5 29 29 H 1.08993 * 109.52193 * 302.31481 * 8 6 5 30 30 H 1.09003 * 109.50242 * 297.71588 * 9 8 6 31 31 H 1.08991 * 109.50180 * 177.59977 * 9 8 6 32 32 H 1.08995 * 109.46254 * 180.80141 * 10 9 8 33 33 H 1.09004 * 109.45711 * 60.83653 * 10 9 8 34 34 H 1.09001 * 109.47271 * 306.04634 * 12 11 10 35 35 H 1.09004 * 109.47041 * 186.04481 * 12 11 10 36 36 H 1.09001 * 109.46832 * 59.99999 * 13 12 11 37 37 H 1.09000 * 109.47611 * 300.00296 * 13 12 11 38 38 H 0.96999 * 120.00061 * 179.97438 * 17 16 14 39 39 H 1.09004 * 109.46600 * 58.27717 * 22 11 10 40 40 H 1.09000 * 109.46136 * 178.24222 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1887 -0.7358 1.6152 6 6 3.7054 -0.8197 1.7979 7 1 4.1439 0.1686 1.6598 8 6 4.2918 -1.7877 0.7665 9 6 5.8008 -1.9119 0.9947 10 6 6.0577 -2.3888 2.4260 11 7 5.4784 -1.4290 3.3746 12 6 5.8249 -1.7816 4.7579 13 6 7.3336 -1.6283 4.9606 14 6 7.6891 -1.9893 6.3799 15 1 6.9161 -2.2978 7.0683 16 6 9.0008 -1.9260 6.7996 17 7 9.3110 -2.2416 8.0380 18 14 10.3378 -1.3932 5.6087 19 1 10.5043 0.0808 5.6786 20 1 11.6170 -2.0537 5.9726 21 1 9.9548 -1.7831 4.2279 22 6 4.0232 -1.3283 3.2059 23 1 -0.3633 0.5970 0.8365 24 1 -0.3633 0.4260 -0.9351 25 1 -0.3633 -1.0228 0.0988 26 1 1.7610 -1.7370 1.6664 27 1 1.7611 -0.1172 2.4042 28 1 4.1054 -1.4068 -0.2376 29 1 3.8247 -2.7661 0.8784 30 1 6.2727 -0.9409 0.8445 31 1 6.2172 -2.6323 0.2908 32 1 7.1316 -2.4646 2.5962 33 1 5.5973 -3.3660 2.5713 34 1 5.5352 -2.8141 4.9531 35 1 5.2969 -1.1199 5.4446 36 1 7.6234 -0.5958 4.7653 37 1 7.8617 -2.2898 4.2739 38 1 10.2340 -2.1973 8.3331 39 1 3.5722 -2.3105 3.3476 40 1 3.6194 -0.6338 3.9426 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309281140.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:32 Heat of formation + Delta-G solvation = -107.095344 kcal Electronic energy + Delta-G solvation = -19885.552999 eV Core-core repulsion = 16826.046085 eV Total energy + Delta-G solvation = -3059.506914 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.24153 -37.92597 -37.01859 -36.32012 -34.72083 -33.07089 -31.68501 -30.38999 -27.92766 -26.96735 -24.23597 -23.45032 -21.55959 -20.72838 -19.70694 -19.03807 -17.67649 -17.08494 -16.96357 -16.51341 -16.28361 -16.00824 -15.43588 -15.28676 -14.86908 -14.64742 -14.39082 -14.16657 -13.89251 -13.83445 -13.48944 -13.29155 -13.07560 -12.97042 -12.91511 -12.80010 -12.29400 -12.05618 -11.96256 -11.84040 -11.79089 -11.72734 -11.56367 -11.48707 -11.18024 -10.82097 -10.74162 -9.20375 -8.31151 -6.34952 -0.85514 1.36309 1.36569 1.49502 1.96426 2.35349 2.72899 3.04478 3.05375 3.18810 3.62785 3.69348 3.88545 4.13688 4.15232 4.19276 4.23947 4.37662 4.40606 4.46193 4.54498 4.61920 4.68450 4.79890 4.91492 4.94953 4.99188 5.02239 5.03731 5.14143 5.26543 5.28699 5.42145 5.48920 5.62297 6.14127 6.26782 6.32116 6.72695 7.29979 8.85455 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.040415 B = 0.003583 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.649361 B = 7813.206132 C = 8037.462330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.637 4.637 2 S 2.418 3.582 3 O -0.991 6.991 4 O -0.976 6.976 5 C -0.597 4.597 6 C -0.077 4.077 7 H 0.079 0.921 8 C -0.144 4.144 9 C -0.114 4.114 10 C 0.049 3.951 11 N -0.554 5.554 12 C 0.084 3.916 13 C -0.001 4.001 14 C -0.532 4.532 15 H 0.034 0.966 16 C 0.008 3.992 17 N -0.950 5.950 18 Si 0.950 3.050 19 H -0.268 1.268 20 H -0.282 1.282 21 H -0.250 1.250 22 C 0.066 3.934 23 H 0.152 0.848 24 H 0.135 0.865 25 H 0.155 0.845 26 H 0.162 0.838 27 H 0.161 0.839 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.062 0.938 33 H 0.034 0.966 34 H 0.020 0.980 35 H 0.065 0.935 36 H 0.017 0.983 37 H 0.018 0.982 38 H 0.267 0.733 39 H 0.043 0.957 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.682 2.307 -18.448 27.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.790 4.790 2 S 2.606 3.394 3 O -0.988 6.988 4 O -0.973 6.973 5 C -0.727 4.727 6 C -0.096 4.096 7 H 0.098 0.902 8 C -0.181 4.181 9 C -0.152 4.152 10 C -0.079 4.079 11 N -0.278 5.278 12 C -0.043 4.043 13 C -0.039 4.039 14 C -0.570 4.570 15 H 0.053 0.947 16 C -0.189 4.189 17 N -0.590 5.590 18 Si 0.774 3.226 19 H -0.193 1.193 20 H -0.208 1.208 21 H -0.174 1.174 22 C -0.063 4.063 23 H 0.170 0.830 24 H 0.153 0.847 25 H 0.173 0.827 26 H 0.180 0.820 27 H 0.179 0.821 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.081 0.919 33 H 0.052 0.948 34 H 0.038 0.962 35 H 0.083 0.917 36 H 0.036 0.964 37 H 0.037 0.963 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -19.756 3.055 -19.111 27.656 hybrid contribution 0.154 -0.912 1.056 1.404 sum -19.602 2.143 -18.055 26.736 Atomic orbital electron populations 1.30088 1.21682 1.13964 1.13268 1.07565 0.79933 0.74289 0.77610 1.93550 1.81153 1.36881 1.87219 1.93534 1.80510 1.67243 1.56057 1.30287 1.03279 1.16218 1.22922 1.20893 0.92035 1.00743 0.95970 0.90249 1.22125 0.95958 1.00579 0.99450 1.21573 0.96607 1.02162 0.94842 1.22177 0.99783 0.93110 0.92804 1.61901 1.11799 1.49801 1.04337 1.21793 0.96888 0.97661 0.87995 1.19457 0.93760 0.96439 0.94264 1.21416 0.93707 1.45128 0.96789 0.94734 1.25943 1.01410 0.94763 0.96826 1.70055 1.19716 1.50748 1.18528 0.85654 0.77815 0.78971 0.80167 1.19313 1.20793 1.17386 1.22124 0.87139 1.00433 0.96556 0.83001 0.84656 0.82688 0.81994 0.82066 0.89622 0.90144 0.91900 0.89839 0.91909 0.94770 0.96186 0.91692 0.96426 0.96337 0.92420 0.93860 0.89971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -2.01 10.62 113.37 1.20 -0.80 16 2 S 2.42 31.76 5.15 -56.49 -0.29 31.47 16 3 O -0.99 -22.80 18.10 -127.37 -2.30 -25.10 16 4 O -0.98 -19.88 15.51 -127.37 -1.98 -21.86 16 5 C -0.60 -6.27 5.27 71.98 0.38 -5.89 16 6 C -0.08 -1.59 2.35 -10.74 -0.03 -1.62 16 7 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 8 C -0.14 -3.15 4.83 30.68 0.15 -3.00 16 9 C -0.11 -2.91 6.09 30.65 0.19 -2.73 16 10 C 0.05 1.52 5.29 86.32 0.46 1.98 16 11 N -0.55 -18.48 4.65 -896.36 -4.17 -22.65 16 12 C 0.08 3.39 4.90 86.30 0.42 3.81 16 13 C 0.00 -0.07 3.98 29.85 0.12 0.05 16 14 C -0.53 -31.21 9.66 25.60 0.25 -30.97 16 15 H 0.03 2.20 7.99 -2.91 -0.02 2.18 16 16 C 0.01 0.45 5.47 84.65 0.46 0.91 16 17 N -0.95 -60.21 13.96 21.44 0.30 -59.91 16 18 Si 0.95 45.58 27.47 68.60 1.88 47.46 16 19 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 20 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 21 H -0.25 -11.30 6.54 99.48 0.65 -10.65 16 22 C 0.07 1.65 4.74 86.33 0.41 2.06 16 23 H 0.15 -0.13 8.14 -2.39 -0.02 -0.15 16 24 H 0.13 0.39 8.14 -2.39 -0.02 0.37 16 25 H 0.15 -0.24 8.14 -2.39 -0.02 -0.26 16 26 H 0.16 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.16 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.09 1.93 5.58 -2.39 -0.01 1.91 16 29 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.06 2.19 6.22 -2.39 -0.01 2.17 16 33 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 34 H 0.02 0.82 8.12 -2.39 -0.02 0.80 16 35 H 0.06 2.60 7.98 -2.38 -0.02 2.59 16 36 H 0.02 0.86 7.57 -2.39 -0.02 0.84 16 37 H 0.02 0.89 5.49 -2.39 -0.01 0.87 16 38 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 39 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 40 H 0.08 1.92 8.01 -2.39 -0.02 1.90 16 Total: -1.00 -81.40 323.64 -1.61 -83.01 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: 0.94 Total: 3.78 kcal Atomic # 6 Polarization: -40.21 SS G_CDS: 4.01 Total: -36.20 kcal Atomic # 7 Polarization: -78.69 SS G_CDS: -3.87 Total: -82.56 kcal Atomic # 8 Polarization: -42.68 SS G_CDS: -4.28 Total: -46.96 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.88 Total: 47.46 kcal Atomic # 16 Polarization: 31.76 SS G_CDS: -0.29 Total: 31.47 kcal Total: -81.40 -1.61 -83.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309281140.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.088 kcal (2) G-P(sol) polarization free energy of solvation -81.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds