Wall clock time and date at job start Mon Mar 30 2020 01:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42096 * 108.58088 * 2 1 4 4 O 1.42097 * 108.57491 * 228.97403 * 2 1 3 5 5 C 1.81401 * 101.91884 * 114.48733 * 2 1 3 6 6 C 1.53000 * 109.46763 * 179.97438 * 5 2 1 7 7 H 1.09000 * 109.50637 * 305.07450 * 6 5 2 8 8 C 1.53117 * 109.50241 * 65.20028 * 6 5 2 9 9 C 1.53127 * 109.15989 * 177.59130 * 8 6 5 10 10 C 1.53038 * 109.27941 * 302.34585 * 9 8 6 11 11 N 1.46830 * 109.51757 * 59.17550 * 10 9 8 12 12 C 1.46901 * 110.98168 * 174.15669 * 11 10 9 13 13 C 1.53000 * 109.47158 * 294.21498 * 12 11 10 14 14 C 1.50699 * 109.47018 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00024 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00197 * 180.02562 * 14 13 12 17 17 N 1.31521 * 119.99682 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00315 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46769 * 59.99967 * 18 16 14 20 20 H 1.48507 * 109.47054 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47229 * 300.00044 * 18 16 14 22 22 C 1.46847 * 111.21086 * 298.25173 * 11 10 9 23 23 H 1.09003 * 109.46848 * 305.51503 * 1 2 3 24 24 H 1.09002 * 109.46717 * 65.50819 * 1 2 3 25 25 H 1.08990 * 109.47643 * 185.51018 * 1 2 3 26 26 H 1.09001 * 109.46945 * 60.00202 * 5 2 1 27 27 H 1.08993 * 109.47232 * 299.99959 * 5 2 1 28 28 H 1.08997 * 109.52073 * 297.49809 * 8 6 5 29 29 H 1.08998 * 109.52156 * 57.62450 * 8 6 5 30 30 H 1.08997 * 109.50037 * 62.28538 * 9 8 6 31 31 H 1.09000 * 109.49970 * 182.40199 * 9 8 6 32 32 H 1.08995 * 109.46433 * 179.19502 * 10 9 8 33 33 H 1.09004 * 109.46142 * 299.17444 * 10 9 8 34 34 H 1.09001 * 109.46985 * 54.21857 * 12 11 10 35 35 H 1.09002 * 109.46593 * 174.21847 * 12 11 10 36 36 H 1.09002 * 109.46999 * 300.00307 * 13 12 11 37 37 H 1.08998 * 109.46977 * 59.99901 * 13 12 11 38 38 H 0.96998 * 119.99705 * 180.02562 * 17 16 14 39 39 H 1.09002 * 109.46448 * 301.73578 * 22 11 10 40 40 H 1.08994 * 109.45958 * 181.75943 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1887 -0.7357 1.6153 6 6 3.7054 -0.8196 1.7979 7 1 4.1434 -1.3623 0.9602 8 6 4.2922 0.5935 1.8557 9 6 5.8013 0.5014 2.0987 10 6 6.0581 -0.2697 3.3954 11 7 5.4783 -1.6145 3.2896 12 6 5.8249 -2.4304 4.4609 13 6 7.3344 -2.6791 4.4806 14 6 7.6898 -3.5167 5.6819 15 1 6.9165 -3.8390 6.3634 16 6 9.0025 -3.8707 5.9116 17 7 9.9443 -3.4777 5.0820 18 14 9.4432 -4.9083 7.4010 19 1 8.7286 -6.2081 7.3277 20 1 10.9084 -5.1498 7.4201 21 1 9.0428 -4.1926 8.6389 22 6 4.0230 -1.5524 3.1034 23 1 -0.3633 0.5970 0.8365 24 1 -0.3633 0.4260 -0.9352 25 1 -0.3634 -1.0228 0.0987 26 1 1.7610 -1.7370 1.6664 27 1 1.7610 -0.1171 2.4042 28 1 4.1059 1.1042 0.9110 29 1 3.8247 1.1491 2.6685 30 1 6.2728 -0.0200 1.2658 31 1 6.2181 1.5050 2.1834 32 1 7.1320 -0.3494 3.5640 33 1 5.5979 0.2595 4.2299 34 1 5.5313 -1.9048 5.3696 35 1 5.3001 -3.3843 4.4073 36 1 7.6279 -3.2047 3.5719 37 1 7.8591 -1.7252 4.5342 38 1 10.8677 -3.7271 5.2433 39 1 3.5724 -1.0171 3.9393 40 1 3.6190 -2.5637 3.0598 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309281141.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:36 Heat of formation + Delta-G solvation = -81.979306 kcal Electronic energy + Delta-G solvation = -19813.732717 eV Core-core repulsion = 16755.314915 eV Total energy + Delta-G solvation = -3058.417801 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.99176 -37.19140 -36.25086 -34.84698 -32.82745 -31.84003 -30.00755 -29.39936 -26.92521 -25.10718 -22.85451 -22.26848 -20.02829 -19.57249 -19.04283 -16.97911 -16.55386 -16.32775 -16.17470 -15.14179 -14.68004 -14.50703 -14.34826 -13.98282 -13.83581 -13.58510 -13.53875 -12.89682 -12.80253 -12.45346 -12.20002 -12.15105 -12.04188 -11.95401 -11.39618 -11.20199 -11.09055 -10.91440 -10.83815 -10.66700 -10.57373 -10.32345 -10.00480 -9.78876 -9.29058 -9.11795 -8.31752 -7.71771 -5.98574 -4.01203 -0.28346 2.49484 3.33589 3.36423 3.38205 3.40269 3.72454 4.18763 4.36593 4.41872 4.46234 4.65893 4.68040 4.88341 5.10818 5.22122 5.24817 5.37086 5.41484 5.46290 5.59072 5.79075 5.88435 5.94407 6.01901 6.15408 6.19763 6.28131 6.43597 6.56098 6.59660 6.97017 7.51596 7.59303 7.80549 7.91094 8.09723 8.44121 9.05862 9.62223 11.12736 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.044893 B = 0.003313 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.554310 B = 8448.369437 C = 8694.510482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.661 4.661 2 S 2.419 3.581 3 O -0.936 6.936 4 O -0.938 6.938 5 C -0.602 4.602 6 C -0.073 4.073 7 H 0.095 0.905 8 C -0.143 4.143 9 C -0.115 4.115 10 C 0.052 3.948 11 N -0.539 5.539 12 C 0.064 3.936 13 C 0.028 3.972 14 C -0.524 4.524 15 H 0.053 0.947 16 C 0.058 3.942 17 N -0.893 5.893 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.278 1.278 22 C 0.069 3.931 23 H 0.127 0.873 24 H 0.127 0.873 25 H 0.127 0.873 26 H 0.133 0.867 27 H 0.131 0.869 28 H 0.084 0.916 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.025 0.975 34 H 0.019 0.981 35 H 0.060 0.940 36 H 0.025 0.975 37 H 0.018 0.982 38 H 0.261 0.739 39 H 0.029 0.971 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.854 8.451 -8.247 23.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.809 4.809 2 S 2.602 3.398 3 O -0.933 6.933 4 O -0.935 6.935 5 C -0.732 4.732 6 C -0.093 4.093 7 H 0.114 0.886 8 C -0.180 4.180 9 C -0.153 4.153 10 C -0.076 4.076 11 N -0.263 5.263 12 C -0.063 4.063 13 C -0.009 4.009 14 C -0.563 4.563 15 H 0.071 0.929 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.060 4.060 23 H 0.146 0.854 24 H 0.146 0.854 25 H 0.146 0.854 26 H 0.152 0.848 27 H 0.149 0.851 28 H 0.102 0.898 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.043 0.957 34 H 0.037 0.963 35 H 0.079 0.921 36 H 0.044 0.956 37 H 0.036 0.964 38 H 0.071 0.929 39 H 0.047 0.953 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.903 8.519 -9.356 22.747 hybrid contribution -0.790 -0.539 2.271 2.464 sum -19.693 7.980 -7.086 22.399 Atomic orbital electron populations 1.30313 1.27567 1.11443 1.11606 1.07916 0.77882 0.76070 0.77958 1.93587 1.78338 1.34745 1.86616 1.93613 1.78765 1.66960 1.54136 1.30355 1.06549 1.13826 1.22515 1.20952 0.88651 0.98299 1.01395 0.88632 1.22095 0.97289 0.95083 1.03558 1.21576 0.94893 0.99970 0.98893 1.22151 1.01461 0.88412 0.95557 1.61972 1.08491 1.13234 1.42640 1.22326 1.01154 0.94962 0.87810 1.19099 0.87705 0.96912 0.97225 1.21154 0.92797 1.32832 1.09468 0.92903 1.24994 0.96558 0.96198 0.96548 1.69964 1.00688 1.45802 1.36703 0.86655 0.77254 0.80841 0.83198 1.20246 1.21266 1.20335 1.21989 0.90041 0.99533 0.94443 0.85449 0.85421 0.85431 0.84839 0.85084 0.89770 0.91629 0.90858 0.91419 0.89318 0.95655 0.96284 0.92112 0.95649 0.96416 0.92921 0.95303 0.90876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.68 10.62 101.05 1.07 -1.61 16 2 S 2.42 19.46 5.16 -107.50 -0.55 18.90 16 3 O -0.94 -10.58 15.52 -57.83 -0.90 -11.48 16 4 O -0.94 -11.48 18.10 -57.83 -1.05 -12.53 16 5 C -0.60 -4.49 5.26 37.16 0.20 -4.29 16 6 C -0.07 -0.88 2.35 -90.54 -0.21 -1.10 16 7 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 8 C -0.14 -1.80 4.84 -26.61 -0.13 -1.93 16 9 C -0.12 -1.66 6.09 -26.65 -0.16 -1.82 16 10 C 0.05 0.89 5.29 -3.84 -0.02 0.87 16 11 N -0.54 -9.80 4.66 -234.68 -1.09 -10.90 16 12 C 0.06 1.35 4.90 -3.82 -0.02 1.33 16 13 C 0.03 0.73 4.90 -27.88 -0.14 0.59 16 14 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 15 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -26.97 13.29 55.43 0.74 -26.24 16 18 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 C 0.07 0.99 4.74 -3.83 -0.02 0.97 16 23 H 0.13 0.29 8.14 -51.92 -0.42 -0.13 16 24 H 0.13 0.47 8.14 -51.92 -0.42 0.05 16 25 H 0.13 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.13 0.69 8.14 -51.92 -0.42 0.26 16 27 H 0.13 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.08 1.05 5.59 -51.93 -0.29 0.76 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.09 1.71 6.21 -51.93 -0.32 1.39 16 33 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.02 0.40 8.12 -51.93 -0.42 -0.02 16 35 H 0.06 1.26 7.99 -51.93 -0.41 0.84 16 36 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.02 0.48 6.43 -51.93 -0.33 0.15 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.98 8.01 -51.93 -0.42 0.57 16 LS Contribution 327.24 15.07 4.93 4.93 Total: -1.00 -35.83 327.24 -9.60 -45.43 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: -6.81 Total: -4.22 kcal Atomic # 6 Polarization: -20.74 SS G_CDS: 0.16 Total: -20.58 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: -0.36 Total: -37.13 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -1.94 Total: -24.01 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 19.46 SS G_CDS: -0.55 Total: 18.90 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -35.83 -9.60 -45.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309281141.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.550 kcal (2) G-P(sol) polarization free energy of solvation -35.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds