Wall clock time and date at job start Mon Mar 30 2020 01:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42096 * 108.58088 * 2 1 4 4 O 1.42097 * 108.57491 * 228.97403 * 2 1 3 5 5 C 1.81401 * 101.91884 * 114.48733 * 2 1 3 6 6 C 1.53000 * 109.46763 * 179.97438 * 5 2 1 7 7 H 1.09000 * 109.50637 * 305.07450 * 6 5 2 8 8 C 1.53117 * 109.50241 * 65.20028 * 6 5 2 9 9 C 1.53127 * 109.15989 * 177.59130 * 8 6 5 10 10 C 1.53038 * 109.27941 * 302.34585 * 9 8 6 11 11 N 1.46830 * 109.51757 * 59.17550 * 10 9 8 12 12 C 1.46901 * 110.98168 * 174.15669 * 11 10 9 13 13 C 1.53000 * 109.47158 * 294.21498 * 12 11 10 14 14 C 1.50699 * 109.47018 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00024 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00197 * 180.02562 * 14 13 12 17 17 N 1.31521 * 119.99682 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00315 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46769 * 59.99967 * 18 16 14 20 20 H 1.48507 * 109.47054 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47229 * 300.00044 * 18 16 14 22 22 C 1.46847 * 111.21086 * 298.25173 * 11 10 9 23 23 H 1.09003 * 109.46848 * 305.51503 * 1 2 3 24 24 H 1.09002 * 109.46717 * 65.50819 * 1 2 3 25 25 H 1.08990 * 109.47643 * 185.51018 * 1 2 3 26 26 H 1.09001 * 109.46945 * 60.00202 * 5 2 1 27 27 H 1.08993 * 109.47232 * 299.99959 * 5 2 1 28 28 H 1.08997 * 109.52073 * 297.49809 * 8 6 5 29 29 H 1.08998 * 109.52156 * 57.62450 * 8 6 5 30 30 H 1.08997 * 109.50037 * 62.28538 * 9 8 6 31 31 H 1.09000 * 109.49970 * 182.40199 * 9 8 6 32 32 H 1.08995 * 109.46433 * 179.19502 * 10 9 8 33 33 H 1.09004 * 109.46142 * 299.17444 * 10 9 8 34 34 H 1.09001 * 109.46985 * 54.21857 * 12 11 10 35 35 H 1.09002 * 109.46593 * 174.21847 * 12 11 10 36 36 H 1.09002 * 109.46999 * 300.00307 * 13 12 11 37 37 H 1.08998 * 109.46977 * 59.99901 * 13 12 11 38 38 H 0.96998 * 119.99705 * 180.02562 * 17 16 14 39 39 H 1.09002 * 109.46448 * 301.73578 * 22 11 10 40 40 H 1.08994 * 109.45958 * 181.75943 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1887 -0.7357 1.6153 6 6 3.7054 -0.8196 1.7979 7 1 4.1434 -1.3623 0.9602 8 6 4.2922 0.5935 1.8557 9 6 5.8013 0.5014 2.0987 10 6 6.0581 -0.2697 3.3954 11 7 5.4783 -1.6145 3.2896 12 6 5.8249 -2.4304 4.4609 13 6 7.3344 -2.6791 4.4806 14 6 7.6898 -3.5167 5.6819 15 1 6.9165 -3.8390 6.3634 16 6 9.0025 -3.8707 5.9116 17 7 9.9443 -3.4777 5.0820 18 14 9.4432 -4.9083 7.4010 19 1 8.7286 -6.2081 7.3277 20 1 10.9084 -5.1498 7.4201 21 1 9.0428 -4.1926 8.6389 22 6 4.0230 -1.5524 3.1034 23 1 -0.3633 0.5970 0.8365 24 1 -0.3633 0.4260 -0.9352 25 1 -0.3634 -1.0228 0.0987 26 1 1.7610 -1.7370 1.6664 27 1 1.7610 -0.1171 2.4042 28 1 4.1059 1.1042 0.9110 29 1 3.8247 1.1491 2.6685 30 1 6.2728 -0.0200 1.2658 31 1 6.2181 1.5050 2.1834 32 1 7.1320 -0.3494 3.5640 33 1 5.5979 0.2595 4.2299 34 1 5.5313 -1.9048 5.3696 35 1 5.3001 -3.3843 4.4073 36 1 7.6279 -3.2047 3.5719 37 1 7.8591 -1.7252 4.5342 38 1 10.8677 -3.7271 5.2433 39 1 3.5724 -1.0171 3.9393 40 1 3.6190 -2.5637 3.0598 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309281141.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:35 Heat of formation + Delta-G solvation = -109.348061 kcal Electronic energy + Delta-G solvation = -19814.919515 eV Core-core repulsion = 16755.314915 eV Total energy + Delta-G solvation = -3059.604600 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.22242 -37.92310 -37.00963 -36.29145 -34.72482 -33.03813 -31.23906 -30.38411 -27.89365 -26.88167 -24.46680 -23.48249 -21.65444 -20.72558 -19.69851 -18.60017 -17.66873 -17.06075 -16.95637 -16.55556 -16.38596 -15.99664 -15.42838 -15.22172 -14.88366 -14.35212 -14.28830 -14.04530 -13.87296 -13.78416 -13.43651 -13.20544 -13.06197 -12.94887 -12.87919 -12.76897 -12.49827 -12.25639 -11.98003 -11.89017 -11.79492 -11.60071 -11.55533 -11.37396 -11.17207 -10.77471 -10.52266 -9.15393 -8.19700 -6.31588 -0.85106 1.40005 1.43613 1.51530 1.97087 2.40239 2.74902 3.09764 3.13473 3.19216 3.63690 3.69548 3.88707 4.13537 4.15773 4.21080 4.25273 4.39122 4.41998 4.49930 4.58535 4.62028 4.69548 4.80490 4.92660 4.98779 5.01259 5.02688 5.09438 5.13901 5.27862 5.39912 5.47062 5.67305 5.79256 6.11430 6.34054 6.35705 6.85970 7.37587 8.92346 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.044893 B = 0.003313 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.554310 B = 8448.369437 C = 8694.510482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.635 4.635 2 S 2.416 3.584 3 O -0.977 6.977 4 O -0.992 6.992 5 C -0.595 4.595 6 C -0.077 4.077 7 H 0.076 0.924 8 C -0.141 4.141 9 C -0.114 4.114 10 C 0.055 3.945 11 N -0.557 5.557 12 C 0.081 3.919 13 C 0.035 3.965 14 C -0.546 4.546 15 H 0.062 0.938 16 C 0.000 4.000 17 N -0.933 5.933 18 Si 0.968 3.032 19 H -0.265 1.265 20 H -0.284 1.284 21 H -0.266 1.266 22 C 0.067 3.933 23 H 0.156 0.844 24 H 0.135 0.865 25 H 0.152 0.848 26 H 0.162 0.838 27 H 0.164 0.836 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.053 0.947 33 H 0.034 0.966 34 H 0.022 0.978 35 H 0.066 0.934 36 H -0.011 1.011 37 H -0.007 1.007 38 H 0.264 0.736 39 H 0.045 0.955 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.058 8.327 -6.949 25.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.788 4.788 2 S 2.604 3.396 3 O -0.974 6.974 4 O -0.989 6.989 5 C -0.725 4.725 6 C -0.097 4.097 7 H 0.094 0.906 8 C -0.179 4.179 9 C -0.152 4.152 10 C -0.073 4.073 11 N -0.282 5.282 12 C -0.047 4.047 13 C -0.002 4.002 14 C -0.584 4.584 15 H 0.080 0.920 16 C -0.198 4.198 17 N -0.573 5.573 18 Si 0.792 3.208 19 H -0.190 1.190 20 H -0.209 1.209 21 H -0.191 1.191 22 C -0.062 4.062 23 H 0.174 0.826 24 H 0.154 0.846 25 H 0.171 0.829 26 H 0.180 0.820 27 H 0.182 0.818 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.071 0.929 33 H 0.052 0.948 34 H 0.040 0.960 35 H 0.085 0.915 36 H 0.007 0.993 37 H 0.011 0.989 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -22.086 8.407 -8.074 24.973 hybrid contribution 0.151 -0.472 1.833 1.899 sum -21.935 7.935 -6.241 24.146 Atomic orbital electron populations 1.30077 1.21433 1.13913 1.13415 1.07615 0.80052 0.74511 0.77422 1.93531 1.80568 1.36283 1.87044 1.93550 1.81221 1.67809 1.56344 1.30276 1.03042 1.16356 1.22873 1.20891 0.92164 0.97199 0.99458 0.90594 1.22108 0.95607 0.95907 1.04262 1.21566 0.96851 1.00018 0.96749 1.22085 0.99367 0.88507 0.97378 1.61867 1.11740 1.13512 1.41064 1.21950 0.97395 0.96009 0.89303 1.18931 0.91321 0.94907 0.95067 1.21614 0.93444 1.33148 1.10218 0.91984 1.26004 0.96451 0.97490 0.99893 1.70119 1.01137 1.47157 1.38865 0.85459 0.77015 0.79179 0.79122 1.19026 1.20925 1.19055 1.22129 0.87084 1.00853 0.96099 0.82596 0.84636 0.82932 0.81961 0.81820 0.89628 0.89917 0.92390 0.89964 0.92851 0.94757 0.95995 0.91523 0.99256 0.98852 0.92778 0.93675 0.89886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -2.33 10.62 113.37 1.20 -1.13 16 2 S 2.42 34.42 5.16 -56.49 -0.29 34.13 16 3 O -0.98 -21.11 15.52 -127.37 -1.98 -23.09 16 4 O -0.99 -24.16 18.10 -127.37 -2.30 -26.47 16 5 C -0.60 -6.88 5.26 71.98 0.38 -6.50 16 6 C -0.08 -1.76 2.35 -10.74 -0.03 -1.79 16 7 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 8 C -0.14 -3.42 4.84 30.68 0.15 -3.27 16 9 C -0.11 -3.34 6.09 30.65 0.19 -3.15 16 10 C 0.05 1.92 5.29 86.33 0.46 2.38 16 11 N -0.56 -20.51 4.66 -896.39 -4.17 -24.69 16 12 C 0.08 3.46 4.90 86.30 0.42 3.88 16 13 C 0.04 1.92 4.90 29.85 0.15 2.07 16 14 C -0.55 -31.56 9.11 25.60 0.23 -31.33 16 15 H 0.06 3.39 7.74 -2.91 -0.02 3.36 16 16 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 17 N -0.93 -58.05 13.29 21.45 0.28 -57.77 16 18 Si 0.97 44.59 29.54 68.60 2.03 46.62 16 19 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 20 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 21 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 22 C 0.07 1.79 4.74 86.33 0.41 2.20 16 23 H 0.16 -0.19 8.14 -2.39 -0.02 -0.21 16 24 H 0.14 0.46 8.14 -2.39 -0.02 0.44 16 25 H 0.15 -0.08 8.14 -2.40 -0.02 -0.10 16 26 H 0.16 0.96 8.14 -2.39 -0.02 0.95 16 27 H 0.16 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.09 2.10 5.59 -2.39 -0.01 2.09 16 29 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.05 2.22 6.21 -2.39 -0.01 2.20 16 33 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.02 0.92 8.12 -2.39 -0.02 0.90 16 35 H 0.07 2.74 7.99 -2.39 -0.02 2.72 16 36 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 37 H -0.01 -0.40 6.43 -2.39 -0.02 -0.42 16 38 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 39 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.08 2.05 8.01 -2.39 -0.02 2.03 16 Total: -1.00 -81.57 327.24 -1.42 -82.99 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: 0.99 Total: 4.48 kcal Atomic # 6 Polarization: -40.23 SS G_CDS: 4.02 Total: -36.21 kcal Atomic # 7 Polarization: -78.56 SS G_CDS: -3.89 Total: -82.45 kcal Atomic # 8 Polarization: -45.28 SS G_CDS: -4.28 Total: -49.56 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Atomic # 16 Polarization: 34.42 SS G_CDS: -0.29 Total: 34.13 kcal Total: -81.57 -1.42 -82.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309281141.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.356 kcal (2) G-P(sol) polarization free energy of solvation -81.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds