Wall clock time and date at job start Mon Mar 30 2020 01:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42098 * 108.57887 * 2 1 4 4 O 1.42102 * 108.57886 * 228.97732 * 2 1 3 5 5 C 1.81401 * 101.92176 * 114.48870 * 2 1 3 6 6 H 1.09001 * 109.49760 * 65.07686 * 5 2 1 7 7 C 1.53117 * 109.50192 * 304.99836 * 5 2 1 8 8 C 1.53119 * 109.15747 * 182.36382 * 7 5 2 9 9 C 1.53031 * 109.27940 * 57.65849 * 8 7 5 10 10 N 1.46848 * 109.52283 * 300.81784 * 9 8 7 11 11 C 1.46902 * 111.00267 * 185.83943 * 10 9 8 12 12 C 1.52994 * 109.46988 * 66.04214 * 11 10 9 13 13 C 1.52996 * 109.47119 * 180.02562 * 12 11 10 14 14 C 1.50702 * 109.47159 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 C 1.46854 * 111.19746 * 61.74029 * 10 9 8 23 23 H 1.08997 * 109.46801 * 305.51317 * 1 2 3 24 24 H 1.09006 * 109.47215 * 65.51000 * 1 2 3 25 25 H 1.08995 * 109.47570 * 185.51100 * 1 2 3 26 26 H 1.09005 * 109.52059 * 62.46245 * 7 5 2 27 27 H 1.08998 * 109.57930 * 302.30117 * 7 5 2 28 28 H 1.09003 * 109.50660 * 297.71134 * 8 7 5 29 29 H 1.09008 * 109.53456 * 177.61998 * 8 7 5 30 30 H 1.08998 * 109.46082 * 180.80300 * 9 8 7 31 31 H 1.09001 * 109.46564 * 60.83464 * 9 8 7 32 32 H 1.08998 * 109.46869 * 306.05041 * 11 10 9 33 33 H 1.08994 * 109.47040 * 186.04744 * 11 10 9 34 34 H 1.09004 * 109.46806 * 60.00264 * 12 11 10 35 35 H 1.09000 * 109.47828 * 300.00569 * 12 11 10 36 36 H 1.09004 * 109.47066 * 60.00422 * 13 12 11 37 37 H 1.08994 * 109.47405 * 300.00252 * 13 12 11 38 38 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 39 39 H 1.09003 * 109.45845 * 58.27290 * 22 10 9 40 40 H 1.08997 * 109.46172 * 178.24258 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2668 -0.8841 -1.0162 5 6 2.1888 -0.7357 1.6152 6 1 1.8403 -1.7683 1.6343 7 6 1.4844 0.0621 2.7161 8 6 1.8532 -0.5293 4.0795 9 6 3.3740 -0.5014 4.2476 10 7 4.0011 -1.2787 3.1711 11 6 5.4513 -1.3898 3.3779 12 6 5.7253 -2.2198 4.6335 13 6 7.2356 -2.3350 4.8493 14 6 7.5055 -3.1531 6.0857 15 1 6.6822 -3.5515 6.6600 16 6 8.8037 -3.3983 6.4803 17 7 9.8062 -2.9135 5.7808 18 14 9.1383 -4.4189 8.0086 19 1 8.5537 -5.7732 7.8373 20 1 10.6043 -4.5347 8.2153 21 1 8.5231 -3.7598 9.1886 22 6 3.6998 -0.7018 1.8547 23 1 -0.3633 0.5970 0.8365 24 1 -0.3634 0.4260 -0.9353 25 1 -0.3634 -1.0228 0.0987 26 1 0.4052 0.0044 2.5739 27 1 1.8024 1.1037 2.6727 28 1 1.4994 -1.5587 4.1375 29 1 1.3887 0.0602 4.8701 30 1 3.6408 -0.9348 5.2115 31 1 3.7255 0.5295 4.2034 32 1 5.8780 -0.3943 3.5002 33 1 5.9051 -1.8761 2.5145 34 1 5.2984 -3.2153 4.5112 35 1 5.2713 -1.7335 5.4970 36 1 7.6620 -1.3393 4.9717 37 1 7.6899 -2.8211 3.9860 38 1 10.7196 -3.0857 6.0586 39 1 4.0497 0.3300 1.8217 40 1 4.2033 -1.2809 1.0806 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309361033.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:32 Heat of formation + Delta-G solvation = -83.524130 kcal Electronic energy + Delta-G solvation = -19702.272907 eV Core-core repulsion = 16643.788117 eV Total energy + Delta-G solvation = -3058.484790 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.14644 -37.22637 -36.26245 -34.97644 -33.08873 -31.31360 -30.96716 -29.82803 -26.73106 -24.43233 -23.57177 -22.18041 -20.28402 -19.86961 -18.99429 -17.22018 -16.46450 -16.23335 -16.10809 -15.51303 -15.12011 -14.70494 -14.34799 -14.27105 -13.89125 -13.56176 -13.44053 -13.40264 -12.86836 -12.32471 -12.26911 -12.22811 -12.10986 -11.75506 -11.44601 -11.36084 -11.25468 -11.08618 -10.81484 -10.74110 -10.65809 -10.50428 -10.20540 -9.59252 -9.33155 -9.06377 -8.33171 -8.18623 -5.98465 -4.00758 -0.30880 2.43560 3.30772 3.34187 3.38531 3.40964 3.68660 4.03106 4.16658 4.28167 4.42542 4.47720 4.61295 4.72872 4.85747 5.12556 5.19863 5.31008 5.36895 5.38215 5.43911 5.51524 5.58950 5.64701 5.76432 5.94604 6.02305 6.13018 6.28637 6.67502 6.72615 7.08531 7.25506 7.31085 7.69060 7.83993 8.01714 8.44586 9.06193 9.63092 11.12969 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.040516 B = 0.003239 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.913215 B = 8642.647233 C = 9006.961371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.656 4.656 2 S 2.418 3.582 3 O -0.938 6.938 4 O -0.939 6.939 5 C -0.563 4.563 6 H 0.146 0.854 7 C -0.112 4.112 8 C -0.108 4.108 9 C 0.046 3.954 10 N -0.529 5.529 11 C 0.053 3.947 12 C -0.104 4.104 13 C 0.021 3.979 14 C -0.520 4.520 15 H 0.054 0.946 16 C 0.056 3.944 17 N -0.896 5.896 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.070 3.930 23 H 0.130 0.870 24 H 0.128 0.872 25 H 0.129 0.871 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.034 0.966 32 H 0.032 0.968 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.047 0.953 36 H 0.014 0.986 37 H 0.016 0.984 38 H 0.261 0.739 39 H 0.049 0.951 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.589 7.050 -9.077 24.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.805 4.805 2 S 2.601 3.399 3 O -0.935 6.935 4 O -0.936 6.936 5 C -0.673 4.673 6 H 0.164 0.836 7 C -0.150 4.150 8 C -0.147 4.147 9 C -0.081 4.081 10 N -0.254 5.254 11 C -0.074 4.074 12 C -0.142 4.142 13 C -0.016 4.016 14 C -0.558 4.558 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.720 3.280 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.059 4.059 23 H 0.148 0.852 24 H 0.147 0.853 25 H 0.148 0.852 26 H 0.094 0.906 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.032 0.968 37 H 0.035 0.965 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -21.008 6.889 -9.759 24.167 hybrid contribution 0.031 -0.110 1.378 1.383 sum -20.978 6.779 -8.381 23.585 Atomic orbital electron populations 1.30283 1.26921 1.11662 1.11680 1.08020 0.78404 0.75931 0.77582 1.93588 1.78913 1.34530 1.86511 1.93606 1.78976 1.67004 1.54012 1.30291 1.05608 1.12789 1.18611 0.83610 1.21539 0.99251 0.99284 0.94910 1.21520 0.96070 1.01878 0.95247 1.22206 0.93764 0.96009 0.96170 1.61986 1.12730 1.50461 1.00245 1.22360 0.84565 0.99510 1.00950 1.21659 1.00296 0.98436 0.93779 1.19073 0.88763 0.96956 0.96821 1.21206 0.91854 1.32591 1.10157 0.92747 1.25031 0.96387 0.96066 0.97020 1.69958 0.98805 1.45505 1.39286 0.86653 0.77009 0.80826 0.83466 1.20225 1.21316 1.20287 1.21732 0.90077 0.99510 0.94607 0.85171 0.85350 0.85217 0.90567 0.90137 0.90639 0.90960 0.89298 0.94771 0.94935 0.90868 0.92522 0.93392 0.96792 0.96546 0.92959 0.93245 0.89336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.83 10.02 101.05 1.01 -1.81 16 2 S 2.42 20.81 4.90 -107.50 -0.53 20.28 16 3 O -0.94 -11.36 18.06 -57.83 -1.04 -12.40 16 4 O -0.94 -11.70 18.10 -57.83 -1.05 -12.74 16 5 C -0.56 -4.91 2.78 -26.65 -0.07 -4.98 16 6 H 0.15 1.06 8.14 -51.92 -0.42 0.63 16 7 C -0.11 -0.83 4.92 -26.61 -0.13 -0.96 16 8 C -0.11 -1.00 6.09 -26.65 -0.16 -1.16 16 9 C 0.05 0.59 5.29 -3.84 -0.02 0.57 16 10 N -0.53 -7.64 4.65 -234.68 -1.09 -8.73 16 11 C 0.05 0.92 4.96 -3.83 -0.02 0.90 16 12 C -0.10 -2.13 5.09 -26.74 -0.14 -2.27 16 13 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 14 C -0.52 -14.81 9.11 -34.44 -0.31 -15.13 16 15 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 18 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 C 0.07 0.87 4.74 -3.83 -0.02 0.85 16 23 H 0.13 0.33 6.84 -51.93 -0.36 -0.02 16 24 H 0.13 0.47 8.14 -51.92 -0.42 0.05 16 25 H 0.13 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.08 0.31 6.55 -51.93 -0.34 -0.03 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 30 H 0.09 1.22 6.22 -51.93 -0.32 0.90 16 31 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.03 0.57 8.12 -51.93 -0.42 0.15 16 33 H 0.07 1.26 7.98 -51.93 -0.41 0.85 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.05 0.96 6.44 -51.93 -0.33 0.62 16 36 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.09 1.09 8.01 -51.93 -0.42 0.67 16 LS Contribution 329.07 15.07 4.96 4.96 Total: -1.00 -35.93 329.07 -9.93 -45.86 By element: Atomic # 1 Polarization: 1.31 SS G_CDS: -6.80 Total: -5.48 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: -0.10 Total: -22.05 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: -0.36 Total: -35.17 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -2.09 Total: -25.14 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 20.81 SS G_CDS: -0.53 Total: 20.28 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -35.93 -9.93 -45.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309361033.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.668 kcal (2) G-P(sol) polarization free energy of solvation -35.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds