Wall clock time and date at job start Mon Mar 30 2020 01:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42098 * 108.57887 * 2 1 4 4 O 1.42102 * 108.57886 * 228.97732 * 2 1 3 5 5 C 1.81401 * 101.92176 * 114.48870 * 2 1 3 6 6 H 1.09001 * 109.49760 * 65.07686 * 5 2 1 7 7 C 1.53117 * 109.50192 * 304.99836 * 5 2 1 8 8 C 1.53119 * 109.15747 * 182.36382 * 7 5 2 9 9 C 1.53031 * 109.27940 * 57.65849 * 8 7 5 10 10 N 1.46848 * 109.52283 * 300.81784 * 9 8 7 11 11 C 1.46902 * 111.00267 * 185.83943 * 10 9 8 12 12 C 1.52994 * 109.46988 * 66.04214 * 11 10 9 13 13 C 1.52996 * 109.47119 * 180.02562 * 12 11 10 14 14 C 1.50702 * 109.47159 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 C 1.46854 * 111.19746 * 61.74029 * 10 9 8 23 23 H 1.08997 * 109.46801 * 305.51317 * 1 2 3 24 24 H 1.09006 * 109.47215 * 65.51000 * 1 2 3 25 25 H 1.08995 * 109.47570 * 185.51100 * 1 2 3 26 26 H 1.09005 * 109.52059 * 62.46245 * 7 5 2 27 27 H 1.08998 * 109.57930 * 302.30117 * 7 5 2 28 28 H 1.09003 * 109.50660 * 297.71134 * 8 7 5 29 29 H 1.09008 * 109.53456 * 177.61998 * 8 7 5 30 30 H 1.08998 * 109.46082 * 180.80300 * 9 8 7 31 31 H 1.09001 * 109.46564 * 60.83464 * 9 8 7 32 32 H 1.08998 * 109.46869 * 306.05041 * 11 10 9 33 33 H 1.08994 * 109.47040 * 186.04744 * 11 10 9 34 34 H 1.09004 * 109.46806 * 60.00264 * 12 11 10 35 35 H 1.09000 * 109.47828 * 300.00569 * 12 11 10 36 36 H 1.09004 * 109.47066 * 60.00422 * 13 12 11 37 37 H 1.08994 * 109.47405 * 300.00252 * 13 12 11 38 38 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 39 39 H 1.09003 * 109.45845 * 58.27290 * 22 10 9 40 40 H 1.08997 * 109.46172 * 178.24258 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2668 -0.8841 -1.0162 5 6 2.1888 -0.7357 1.6152 6 1 1.8403 -1.7683 1.6343 7 6 1.4844 0.0621 2.7161 8 6 1.8532 -0.5293 4.0795 9 6 3.3740 -0.5014 4.2476 10 7 4.0011 -1.2787 3.1711 11 6 5.4513 -1.3898 3.3779 12 6 5.7253 -2.2198 4.6335 13 6 7.2356 -2.3350 4.8493 14 6 7.5055 -3.1531 6.0857 15 1 6.6822 -3.5515 6.6600 16 6 8.8037 -3.3983 6.4803 17 7 9.8062 -2.9135 5.7808 18 14 9.1383 -4.4189 8.0086 19 1 8.5537 -5.7732 7.8373 20 1 10.6043 -4.5347 8.2153 21 1 8.5231 -3.7598 9.1886 22 6 3.6998 -0.7018 1.8547 23 1 -0.3633 0.5970 0.8365 24 1 -0.3634 0.4260 -0.9353 25 1 -0.3634 -1.0228 0.0987 26 1 0.4052 0.0044 2.5739 27 1 1.8024 1.1037 2.6727 28 1 1.4994 -1.5587 4.1375 29 1 1.3887 0.0602 4.8701 30 1 3.6408 -0.9348 5.2115 31 1 3.7255 0.5295 4.2034 32 1 5.8780 -0.3943 3.5002 33 1 5.9051 -1.8761 2.5145 34 1 5.2984 -3.2153 4.5112 35 1 5.2713 -1.7335 5.4970 36 1 7.6620 -1.3393 4.9717 37 1 7.6899 -2.8211 3.9860 38 1 10.7196 -3.0857 6.0586 39 1 4.0497 0.3300 1.8217 40 1 4.2033 -1.2809 1.0806 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309361033.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:31 Heat of formation + Delta-G solvation = -111.106627 kcal Electronic energy + Delta-G solvation = -19703.468974 eV Core-core repulsion = 16643.788117 eV Total energy + Delta-G solvation = -3059.680857 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.14221 -38.02075 -37.04662 -36.45061 -34.84025 -32.68790 -32.09959 -30.33489 -28.43902 -25.77853 -24.58333 -23.62787 -21.75683 -20.97024 -19.70503 -18.55803 -17.85771 -17.13536 -16.89463 -16.63843 -16.39845 -16.25264 -15.63490 -15.19420 -14.99055 -14.59063 -14.27750 -13.92613 -13.89043 -13.71580 -13.54900 -13.17371 -13.09902 -13.04201 -12.93881 -12.66648 -12.50095 -12.38303 -12.21633 -11.91594 -11.74689 -11.59019 -11.48575 -11.34794 -11.21752 -10.83746 -10.55263 -9.37872 -8.20814 -6.32420 -0.93868 1.39559 1.43158 1.51109 1.84939 2.40231 2.60197 3.00201 3.07482 3.12240 3.45130 3.61390 3.94266 4.08254 4.14179 4.15884 4.19954 4.30753 4.35051 4.41580 4.62491 4.66333 4.72419 4.76028 4.82616 4.92586 4.97823 5.04940 5.10097 5.11397 5.26404 5.38797 5.50251 5.71734 5.84056 5.99679 6.10022 6.24935 6.84357 7.36954 8.91128 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.040516 B = 0.003239 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.913215 B = 8642.647233 C = 9006.961371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.628 4.628 2 S 2.416 3.584 3 O -0.983 6.983 4 O -0.988 6.988 5 C -0.557 4.557 6 H 0.165 0.835 7 C -0.115 4.115 8 C -0.104 4.104 9 C 0.037 3.963 10 N -0.531 5.531 11 C 0.061 3.939 12 C -0.086 4.086 13 C 0.025 3.975 14 C -0.544 4.544 15 H 0.061 0.939 16 C -0.003 4.003 17 N -0.935 5.935 18 Si 0.968 3.032 19 H -0.266 1.266 20 H -0.283 1.283 21 H -0.265 1.265 22 C 0.059 3.941 23 H 0.160 0.840 24 H 0.142 0.858 25 H 0.158 0.842 26 H 0.125 0.875 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.073 0.927 31 H 0.028 0.972 32 H 0.024 0.976 33 H 0.067 0.933 34 H 0.054 0.946 35 H 0.054 0.946 36 H -0.011 1.011 37 H -0.010 1.010 38 H 0.264 0.736 39 H 0.041 0.959 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.112 6.658 -8.193 27.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.782 4.782 2 S 2.604 3.396 3 O -0.980 6.980 4 O -0.986 6.986 5 C -0.667 4.667 6 H 0.183 0.817 7 C -0.153 4.153 8 C -0.143 4.143 9 C -0.090 4.090 10 N -0.255 5.255 11 C -0.067 4.067 12 C -0.124 4.124 13 C -0.013 4.013 14 C -0.581 4.581 15 H 0.079 0.921 16 C -0.200 4.200 17 N -0.575 5.575 18 Si 0.792 3.208 19 H -0.191 1.191 20 H -0.209 1.209 21 H -0.190 1.190 22 C -0.070 4.070 23 H 0.178 0.822 24 H 0.160 0.840 25 H 0.176 0.824 26 H 0.143 0.857 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.112 0.888 30 H 0.092 0.908 31 H 0.047 0.953 32 H 0.042 0.958 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.007 0.993 37 H 0.008 0.992 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -24.505 6.504 -8.880 26.863 hybrid contribution 1.078 0.044 1.079 1.526 sum -23.427 6.548 -7.801 25.545 Atomic orbital electron populations 1.30052 1.19837 1.14437 1.13850 1.07748 0.81005 0.74231 0.76617 1.93531 1.81432 1.36247 1.86830 1.93545 1.81586 1.67736 1.55685 1.30249 1.02630 1.14440 1.19345 0.81712 1.21703 1.02031 0.98587 0.92988 1.21528 0.92760 1.02834 0.97150 1.22361 0.96730 0.95146 0.94783 1.61956 1.10231 1.51516 1.01840 1.22093 0.87248 0.98314 0.99072 1.21373 0.96322 0.99019 0.95672 1.18979 0.92208 0.94856 0.95264 1.21661 0.92462 1.33002 1.11023 0.92055 1.26031 0.96102 0.97267 1.00616 1.70103 0.99315 1.46849 1.41279 0.85465 0.77010 0.79228 0.79129 1.19069 1.20870 1.19001 1.21829 0.93411 0.98674 0.93118 0.82225 0.83998 0.82357 0.85679 0.90417 0.90216 0.88795 0.90816 0.95345 0.95780 0.91489 0.92703 0.92766 0.99308 0.99157 0.92756 0.94079 0.90235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -2.25 10.02 113.37 1.14 -1.12 16 2 S 2.42 38.09 4.90 -56.49 -0.28 37.82 16 3 O -0.98 -23.55 18.06 -127.37 -2.30 -25.85 16 4 O -0.99 -24.59 18.10 -127.37 -2.31 -26.89 16 5 C -0.56 -8.61 2.78 30.64 0.09 -8.52 16 6 H 0.17 1.90 8.14 -2.39 -0.02 1.88 16 7 C -0.12 -1.30 4.92 30.67 0.15 -1.15 16 8 C -0.10 -1.61 6.09 30.64 0.19 -1.42 16 9 C 0.04 0.93 5.29 86.32 0.46 1.39 16 10 N -0.53 -15.45 4.65 -896.38 -4.17 -19.62 16 11 C 0.06 2.20 4.96 86.30 0.43 2.63 16 12 C -0.09 -3.65 5.09 30.59 0.16 -3.50 16 13 C 0.02 1.34 4.97 29.85 0.15 1.48 16 14 C -0.54 -31.61 9.11 25.60 0.23 -31.38 16 15 H 0.06 3.40 7.74 -2.91 -0.02 3.37 16 16 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 17 N -0.94 -58.16 13.29 21.45 0.28 -57.87 16 18 Si 0.97 44.77 29.54 68.60 2.03 46.79 16 19 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 20 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 21 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 22 C 0.06 1.48 4.74 86.32 0.41 1.88 16 23 H 0.16 -0.24 6.84 -2.39 -0.02 -0.25 16 24 H 0.14 0.35 8.14 -2.39 -0.02 0.33 16 25 H 0.16 -0.16 8.14 -2.39 -0.02 -0.18 16 26 H 0.13 0.23 6.55 -2.38 -0.02 0.22 16 27 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.07 2.02 6.22 -2.39 -0.01 2.01 16 31 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.02 0.90 8.12 -2.39 -0.02 0.88 16 33 H 0.07 2.47 7.98 -2.39 -0.02 2.45 16 34 H 0.05 2.33 8.14 -2.38 -0.02 2.31 16 35 H 0.05 2.22 6.44 -2.39 -0.02 2.20 16 36 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16 37 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 38 H 0.26 15.39 8.31 -92.70 -0.77 14.62 16 39 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.08 2.08 8.01 -2.39 -0.02 2.06 16 Total: -1.00 -81.72 329.07 -1.90 -83.62 By element: Atomic # 1 Polarization: 0.40 SS G_CDS: 0.99 Total: 1.40 kcal Atomic # 6 Polarization: -43.24 SS G_CDS: 3.85 Total: -39.39 kcal Atomic # 7 Polarization: -73.60 SS G_CDS: -3.89 Total: -77.49 kcal Atomic # 8 Polarization: -48.14 SS G_CDS: -4.61 Total: -52.74 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Atomic # 16 Polarization: 38.09 SS G_CDS: -0.28 Total: 37.82 kcal Total: -81.72 -1.90 -83.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309361033.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.490 kcal (2) G-P(sol) polarization free energy of solvation -81.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds