Wall clock time and date at job start Mon Mar 30 2020 01:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 O 1.42102 * 108.57685 * 2 1 4 4 O 1.42107 * 108.57809 * 228.97931 * 2 1 3 5 5 C 1.81394 * 101.92310 * 114.48975 * 2 1 3 6 6 H 1.09004 * 109.50140 * 300.07796 * 5 2 1 7 7 C 1.53120 * 109.53531 * 60.17697 * 5 2 1 8 8 C 1.53118 * 109.16026 * 177.61608 * 7 5 2 9 9 C 1.53048 * 109.27745 * 302.34502 * 8 7 5 10 10 N 1.46848 * 109.52064 * 59.17773 * 9 8 7 11 11 C 1.46901 * 110.99510 * 174.15537 * 10 9 8 12 12 C 1.52992 * 109.47859 * 294.21467 * 11 10 9 13 13 C 1.52997 * 109.47482 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47212 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47294 * 60.00559 * 18 16 14 20 20 H 1.48503 * 109.46954 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47431 * 300.00157 * 18 16 14 22 22 C 1.46844 * 111.20087 * 298.25789 * 10 9 8 23 23 H 1.08998 * 109.46545 * 305.51307 * 1 2 3 24 24 H 1.08999 * 109.46853 * 65.50721 * 1 2 3 25 25 H 1.08993 * 109.46684 * 185.51130 * 1 2 3 26 26 H 1.08999 * 109.52255 * 297.51793 * 7 5 2 27 27 H 1.09002 * 109.51909 * 57.71163 * 7 5 2 28 28 H 1.08998 * 109.50497 * 62.28236 * 8 7 5 29 29 H 1.09001 * 109.50627 * 182.36683 * 8 7 5 30 30 H 1.08996 * 109.45875 * 299.16470 * 9 8 7 31 31 H 1.08994 * 109.45842 * 179.19707 * 9 8 7 32 32 H 1.09002 * 109.46980 * 174.21126 * 11 10 9 33 33 H 1.09001 * 109.46628 * 54.21548 * 11 10 9 34 34 H 1.09002 * 109.47103 * 59.99734 * 12 11 10 35 35 H 1.08998 * 109.46862 * 300.00546 * 12 11 10 36 36 H 1.09002 * 109.47153 * 59.99783 * 13 12 11 37 37 H 1.09001 * 109.46832 * 299.99974 * 13 12 11 38 38 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 39 39 H 1.09003 * 109.46077 * 181.76172 * 22 10 9 40 40 H 1.08997 * 109.46142 * 301.72652 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0163 5 6 2.1888 -0.7357 1.6151 6 1 1.7601 -0.1182 2.4045 7 6 1.5924 -2.1442 1.6870 8 6 1.9642 -2.7795 3.0296 9 6 3.4879 -2.8039 3.1723 10 7 4.0097 -1.4333 3.0977 11 6 5.4532 -1.4042 3.3690 12 6 5.7080 -1.8182 4.8197 13 6 7.2114 -1.7885 5.1020 14 6 7.4624 -2.1956 6.5311 15 1 6.6326 -2.4505 7.1736 16 6 8.7514 -2.2437 7.0180 17 7 9.7619 -1.9338 6.2354 18 14 9.0624 -2.7491 8.7892 19 1 8.5440 -4.1230 9.0103 20 1 10.5217 -2.7201 9.0632 21 1 8.3690 -1.8054 9.7024 22 6 3.7058 -0.8194 1.7988 23 1 -0.3632 0.5970 0.8365 24 1 -0.3633 0.4261 -0.9352 25 1 -0.3632 -1.0229 0.0987 26 1 0.5075 -2.0852 1.6000 27 1 1.9916 -2.7506 0.8740 28 1 1.5321 -2.1942 3.8413 29 1 1.5781 -3.7980 3.0697 30 1 3.9183 -3.4007 2.3683 31 1 3.7555 -3.2427 4.1335 32 1 5.8331 -0.3955 3.2069 33 1 5.9628 -2.0965 2.6988 34 1 5.3281 -2.8269 4.9817 35 1 5.1983 -1.1260 5.4898 36 1 7.5917 -0.7799 4.9398 37 1 7.7207 -2.4810 4.4317 38 1 10.6687 -1.9673 6.5781 39 1 4.1320 0.1832 1.7624 40 1 4.1354 -1.4255 1.0012 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309361036.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:35 Heat of formation + Delta-G solvation = -83.664919 kcal Electronic energy + Delta-G solvation = -19700.609525 eV Core-core repulsion = 16642.118630 eV Total energy + Delta-G solvation = -3058.490895 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.14172 -37.23037 -36.26046 -34.96748 -33.08144 -31.31033 -30.95164 -29.83540 -26.73668 -24.43336 -23.57176 -22.17856 -20.27978 -19.86597 -18.99835 -17.21282 -16.47792 -16.21926 -16.10298 -15.50866 -15.12014 -14.70169 -14.35045 -14.25415 -13.88662 -13.56378 -13.45332 -13.40074 -12.87720 -12.32156 -12.26931 -12.22866 -12.10360 -11.75469 -11.44196 -11.35634 -11.25592 -11.07807 -10.81510 -10.74105 -10.65721 -10.50379 -10.20548 -9.59226 -9.33199 -9.06388 -8.33224 -8.18790 -5.98469 -4.00792 -0.30979 2.43732 3.30838 3.34165 3.38526 3.40934 3.68017 4.03160 4.17351 4.28640 4.42561 4.47689 4.61730 4.73738 4.86192 5.12019 5.20726 5.31464 5.37013 5.38923 5.44620 5.51389 5.59464 5.65343 5.76644 5.94803 6.02536 6.13431 6.28628 6.67519 6.72599 7.08485 7.25530 7.31089 7.69028 7.83954 8.01695 8.44562 9.06169 9.63084 11.12970 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.040500 B = 0.003239 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.194761 B = 8642.500712 C = 9006.551764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.656 4.656 2 S 2.418 3.582 3 O -0.939 6.939 4 O -0.938 6.938 5 C -0.563 4.563 6 H 0.145 0.855 7 C -0.111 4.111 8 C -0.108 4.108 9 C 0.046 3.954 10 N -0.529 5.529 11 C 0.053 3.947 12 C -0.104 4.104 13 C 0.021 3.979 14 C -0.520 4.520 15 H 0.054 0.946 16 C 0.056 3.944 17 N -0.896 5.896 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.070 3.930 23 H 0.129 0.871 24 H 0.128 0.872 25 H 0.129 0.871 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.034 0.966 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.032 0.968 34 H 0.047 0.953 35 H 0.056 0.944 36 H 0.016 0.984 37 H 0.014 0.986 38 H 0.261 0.739 39 H 0.090 0.910 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.297 1.039 -11.877 24.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.805 4.805 2 S 2.600 3.400 3 O -0.936 6.936 4 O -0.935 6.935 5 C -0.673 4.673 6 H 0.163 0.837 7 C -0.149 4.149 8 C -0.147 4.147 9 C -0.082 4.082 10 N -0.254 5.254 11 C -0.074 4.074 12 C -0.142 4.142 13 C -0.016 4.016 14 C -0.558 4.558 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.059 4.059 23 H 0.148 0.852 24 H 0.146 0.854 25 H 0.148 0.852 26 H 0.093 0.907 27 H 0.100 0.900 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.052 0.948 31 H 0.107 0.893 32 H 0.091 0.909 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.035 0.965 37 H 0.032 0.968 38 H 0.070 0.930 39 H 0.108 0.892 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -20.753 1.651 -12.198 24.129 hybrid contribution 0.069 -0.935 0.993 1.366 sum -20.685 0.716 -11.205 23.535 Atomic orbital electron populations 1.30272 1.26911 1.11611 1.11714 1.08029 0.78407 0.75729 0.77802 1.93606 1.78968 1.34451 1.86534 1.93589 1.78918 1.66957 1.54086 1.30289 1.05987 1.08770 1.22264 0.83659 1.21516 1.00050 0.92425 1.00899 1.21522 0.96197 1.00701 0.96294 1.22209 0.94337 0.89356 1.02257 1.61983 1.16325 1.19013 1.28087 1.22360 0.84523 1.01323 0.99183 1.21659 1.00407 0.99823 0.92286 1.19074 0.88833 0.97216 0.96487 1.21203 0.92171 1.45558 0.96874 0.92746 1.25029 0.96329 0.95494 0.97646 1.69955 0.98889 1.48943 1.35767 0.86655 0.76995 0.79110 0.85203 1.20285 1.21316 1.20229 1.21736 0.89876 1.01523 0.92796 0.85219 0.85351 0.85214 0.90664 0.90034 0.90659 0.90958 0.94773 0.89289 0.90854 0.94948 0.93392 0.92517 0.96545 0.96792 0.92957 0.89194 0.93413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.84 10.18 101.05 1.03 -1.81 16 2 S 2.42 20.80 4.89 -107.50 -0.53 20.28 16 3 O -0.94 -11.70 18.10 -57.83 -1.05 -12.74 16 4 O -0.94 -11.31 17.86 -57.83 -1.03 -12.35 16 5 C -0.56 -4.91 2.74 -26.65 -0.07 -4.98 16 6 H 0.15 1.03 8.14 -51.92 -0.42 0.61 16 7 C -0.11 -0.84 5.00 -26.61 -0.13 -0.97 16 8 C -0.11 -1.00 6.09 -26.65 -0.16 -1.17 16 9 C 0.05 0.59 5.29 -3.83 -0.02 0.57 16 10 N -0.53 -7.64 4.66 -234.67 -1.09 -8.73 16 11 C 0.05 0.92 4.96 -3.83 -0.02 0.90 16 12 C -0.10 -2.13 5.08 -26.74 -0.14 -2.27 16 13 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 14 C -0.52 -14.81 9.11 -34.44 -0.31 -15.12 16 15 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.17 13.29 55.43 0.74 -26.44 16 18 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 C 0.07 0.87 4.75 -3.83 -0.02 0.85 16 23 H 0.13 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.13 0.47 8.14 -51.92 -0.42 0.05 16 25 H 0.13 0.33 6.95 -51.93 -0.36 -0.03 16 26 H 0.07 0.32 6.71 -51.93 -0.35 -0.03 16 27 H 0.08 0.65 7.99 -51.93 -0.42 0.23 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.09 1.23 6.21 -51.93 -0.32 0.91 16 32 H 0.07 1.27 7.99 -51.93 -0.41 0.85 16 33 H 0.03 0.56 8.12 -51.93 -0.42 0.14 16 34 H 0.05 0.96 6.43 -51.93 -0.33 0.62 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.09 1.11 8.02 -51.93 -0.42 0.69 16 40 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 329.16 15.07 4.96 4.96 Total: -1.00 -35.88 329.16 -9.91 -45.78 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: -6.80 Total: -5.45 kcal Atomic # 6 Polarization: -21.98 SS G_CDS: -0.08 Total: -22.06 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: -0.36 Total: -35.16 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -2.08 Total: -25.09 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 20.80 SS G_CDS: -0.53 Total: 20.28 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -35.88 -9.91 -45.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309361036.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.881 kcal (2) G-P(sol) polarization free energy of solvation -35.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds