Wall clock time and date at job start Mon Mar 30 2020 01:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 O 1.42102 * 108.57685 * 2 1 4 4 O 1.42107 * 108.57809 * 228.97931 * 2 1 3 5 5 C 1.81394 * 101.92310 * 114.48975 * 2 1 3 6 6 H 1.09004 * 109.50140 * 300.07796 * 5 2 1 7 7 C 1.53120 * 109.53531 * 60.17697 * 5 2 1 8 8 C 1.53118 * 109.16026 * 177.61608 * 7 5 2 9 9 C 1.53048 * 109.27745 * 302.34502 * 8 7 5 10 10 N 1.46848 * 109.52064 * 59.17773 * 9 8 7 11 11 C 1.46901 * 110.99510 * 174.15537 * 10 9 8 12 12 C 1.52992 * 109.47859 * 294.21467 * 11 10 9 13 13 C 1.52997 * 109.47482 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47212 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47294 * 60.00559 * 18 16 14 20 20 H 1.48503 * 109.46954 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47431 * 300.00157 * 18 16 14 22 22 C 1.46844 * 111.20087 * 298.25789 * 10 9 8 23 23 H 1.08998 * 109.46545 * 305.51307 * 1 2 3 24 24 H 1.08999 * 109.46853 * 65.50721 * 1 2 3 25 25 H 1.08993 * 109.46684 * 185.51130 * 1 2 3 26 26 H 1.08999 * 109.52255 * 297.51793 * 7 5 2 27 27 H 1.09002 * 109.51909 * 57.71163 * 7 5 2 28 28 H 1.08998 * 109.50497 * 62.28236 * 8 7 5 29 29 H 1.09001 * 109.50627 * 182.36683 * 8 7 5 30 30 H 1.08996 * 109.45875 * 299.16470 * 9 8 7 31 31 H 1.08994 * 109.45842 * 179.19707 * 9 8 7 32 32 H 1.09002 * 109.46980 * 174.21126 * 11 10 9 33 33 H 1.09001 * 109.46628 * 54.21548 * 11 10 9 34 34 H 1.09002 * 109.47103 * 59.99734 * 12 11 10 35 35 H 1.08998 * 109.46862 * 300.00546 * 12 11 10 36 36 H 1.09002 * 109.47153 * 59.99783 * 13 12 11 37 37 H 1.09001 * 109.46832 * 299.99974 * 13 12 11 38 38 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 39 39 H 1.09003 * 109.46077 * 181.76172 * 22 10 9 40 40 H 1.08997 * 109.46142 * 301.72652 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0163 5 6 2.1888 -0.7357 1.6151 6 1 1.7601 -0.1182 2.4045 7 6 1.5924 -2.1442 1.6870 8 6 1.9642 -2.7795 3.0296 9 6 3.4879 -2.8039 3.1723 10 7 4.0097 -1.4333 3.0977 11 6 5.4532 -1.4042 3.3690 12 6 5.7080 -1.8182 4.8197 13 6 7.2114 -1.7885 5.1020 14 6 7.4624 -2.1956 6.5311 15 1 6.6326 -2.4505 7.1736 16 6 8.7514 -2.2437 7.0180 17 7 9.7619 -1.9338 6.2354 18 14 9.0624 -2.7491 8.7892 19 1 8.5440 -4.1230 9.0103 20 1 10.5217 -2.7201 9.0632 21 1 8.3690 -1.8054 9.7024 22 6 3.7058 -0.8194 1.7988 23 1 -0.3632 0.5970 0.8365 24 1 -0.3633 0.4261 -0.9352 25 1 -0.3632 -1.0229 0.0987 26 1 0.5075 -2.0852 1.6000 27 1 1.9916 -2.7506 0.8740 28 1 1.5321 -2.1942 3.8413 29 1 1.5781 -3.7980 3.0697 30 1 3.9183 -3.4007 2.3683 31 1 3.7555 -3.2427 4.1335 32 1 5.8331 -0.3955 3.2069 33 1 5.9628 -2.0965 2.6988 34 1 5.3281 -2.8269 4.9817 35 1 5.1983 -1.1260 5.4898 36 1 7.5917 -0.7799 4.9398 37 1 7.7207 -2.4810 4.4317 38 1 10.6687 -1.9673 6.5781 39 1 4.1320 0.1832 1.7624 40 1 4.1354 -1.4255 1.0012 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309361036.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:35 Heat of formation + Delta-G solvation = -111.167327 kcal Electronic energy + Delta-G solvation = -19701.802119 eV Core-core repulsion = 16642.118630 eV Total energy + Delta-G solvation = -3059.683489 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.14140 -38.02326 -37.04376 -36.44670 -34.83455 -32.67707 -32.09981 -30.32831 -28.44834 -25.78526 -24.58409 -23.63018 -21.75458 -20.96645 -19.70932 -18.55710 -17.85287 -17.14887 -16.87450 -16.63707 -16.39437 -16.25634 -15.64070 -15.18012 -14.99271 -14.59376 -14.27850 -13.93036 -13.87899 -13.72122 -13.56498 -13.16992 -13.10299 -13.04218 -12.93374 -12.66651 -12.50107 -12.38257 -12.20897 -11.91463 -11.74752 -11.59392 -11.48704 -11.34703 -11.21884 -10.83806 -10.55221 -9.38283 -8.20746 -6.32370 -0.93954 1.39595 1.43200 1.51137 1.85086 2.40263 2.60188 3.00250 3.06483 3.12316 3.45966 3.61377 3.94390 4.08123 4.13914 4.15800 4.19634 4.30402 4.35342 4.42055 4.62383 4.66384 4.72397 4.76276 4.82475 4.92606 4.97918 5.05047 5.10169 5.11208 5.26411 5.38828 5.50310 5.71791 5.84113 5.99597 6.09755 6.24985 6.84428 7.37029 8.91200 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.040500 B = 0.003239 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.194761 B = 8642.500712 C = 9006.551764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.627 4.627 2 S 2.416 3.584 3 O -0.988 6.988 4 O -0.983 6.983 5 C -0.557 4.557 6 H 0.167 0.833 7 C -0.114 4.114 8 C -0.104 4.104 9 C 0.037 3.963 10 N -0.530 5.530 11 C 0.060 3.940 12 C -0.086 4.086 13 C 0.025 3.975 14 C -0.544 4.544 15 H 0.061 0.939 16 C -0.003 4.003 17 N -0.935 5.935 18 Si 0.968 3.032 19 H -0.265 1.265 20 H -0.283 1.283 21 H -0.266 1.266 22 C 0.059 3.941 23 H 0.157 0.843 24 H 0.141 0.859 25 H 0.160 0.840 26 H 0.124 0.876 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.028 0.972 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.024 0.976 34 H 0.054 0.946 35 H 0.055 0.945 36 H -0.010 1.010 37 H -0.012 1.012 38 H 0.264 0.736 39 H 0.081 0.919 40 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.806 0.461 -11.064 27.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.781 4.781 2 S 2.604 3.396 3 O -0.985 6.985 4 O -0.980 6.980 5 C -0.667 4.667 6 H 0.184 0.816 7 C -0.152 4.152 8 C -0.143 4.143 9 C -0.090 4.090 10 N -0.255 5.255 11 C -0.067 4.067 12 C -0.124 4.124 13 C -0.013 4.013 14 C -0.581 4.581 15 H 0.080 0.920 16 C -0.200 4.200 17 N -0.575 5.575 18 Si 0.792 3.208 19 H -0.190 1.190 20 H -0.209 1.209 21 H -0.191 1.191 22 C -0.070 4.070 23 H 0.176 0.824 24 H 0.160 0.840 25 H 0.178 0.822 26 H 0.142 0.858 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.111 0.889 30 H 0.046 0.954 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.042 0.958 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.009 0.991 37 H 0.007 0.993 38 H 0.072 0.928 39 H 0.099 0.901 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -24.236 1.070 -11.395 26.802 hybrid contribution 1.113 -0.755 0.701 1.516 sum -23.123 0.315 -10.695 25.478 Atomic orbital electron populations 1.30040 1.19858 1.14422 1.13813 1.07758 0.80993 0.73996 0.76884 1.93545 1.81574 1.36487 1.86928 1.93533 1.81416 1.67488 1.55541 1.30251 1.02946 1.10377 1.23096 0.81559 1.21670 1.02978 0.90959 0.99608 1.21529 0.92837 1.02388 0.97500 1.22362 0.97405 0.88069 1.01189 1.61954 1.13689 1.20330 1.29506 1.22096 0.87138 1.00588 0.96913 1.21374 0.96417 1.00246 0.94355 1.18980 0.92226 0.94771 0.95331 1.21659 0.92769 1.45699 0.98016 0.92048 1.26028 0.96016 0.95255 1.02711 1.70101 0.99414 1.49912 1.38122 0.85466 0.77028 0.79267 0.79079 1.19006 1.20874 1.19063 1.21834 0.93240 1.00633 0.91336 0.82428 0.84023 0.82228 0.85800 0.90565 0.90140 0.88858 0.95415 0.90781 0.91444 0.95821 0.92781 0.92661 0.99139 0.99327 0.92756 0.90057 0.94284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -2.29 10.18 113.37 1.15 -1.14 16 2 S 2.42 38.05 4.89 -56.49 -0.28 37.78 16 3 O -0.99 -24.62 18.10 -127.37 -2.31 -26.93 16 4 O -0.98 -23.39 17.86 -127.37 -2.27 -25.66 16 5 C -0.56 -8.59 2.74 30.65 0.08 -8.51 16 6 H 0.17 1.84 8.14 -2.39 -0.02 1.82 16 7 C -0.11 -1.33 5.00 30.67 0.15 -1.18 16 8 C -0.10 -1.63 6.09 30.65 0.19 -1.44 16 9 C 0.04 0.94 5.29 86.33 0.46 1.39 16 10 N -0.53 -15.42 4.66 -896.36 -4.17 -19.59 16 11 C 0.06 2.20 4.96 86.30 0.43 2.62 16 12 C -0.09 -3.65 5.08 30.59 0.16 -3.49 16 13 C 0.02 1.33 4.97 29.85 0.15 1.48 16 14 C -0.54 -31.59 9.11 25.60 0.23 -31.36 16 15 H 0.06 3.40 7.74 -2.91 -0.02 3.37 16 16 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 17 N -0.94 -58.15 13.29 21.45 0.28 -57.86 16 18 Si 0.97 44.75 29.54 68.60 2.03 46.77 16 19 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 20 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 21 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 22 C 0.06 1.47 4.75 86.33 0.41 1.88 16 23 H 0.16 -0.13 8.14 -2.39 -0.02 -0.15 16 24 H 0.14 0.37 8.14 -2.39 -0.02 0.35 16 25 H 0.16 -0.24 6.95 -2.39 -0.02 -0.26 16 26 H 0.12 0.28 6.71 -2.39 -0.02 0.27 16 27 H 0.08 1.02 7.99 -2.39 -0.02 1.00 16 28 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 2.04 6.21 -2.39 -0.01 2.02 16 32 H 0.07 2.48 7.99 -2.39 -0.02 2.46 16 33 H 0.02 0.88 8.12 -2.39 -0.02 0.86 16 34 H 0.05 2.21 6.43 -2.39 -0.02 2.19 16 35 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 36 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 37 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 38 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 39 H 0.08 2.12 8.02 -2.39 -0.02 2.10 16 40 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -81.55 329.16 -1.85 -83.40 By element: Atomic # 1 Polarization: 0.52 SS G_CDS: 0.99 Total: 1.52 kcal Atomic # 6 Polarization: -43.30 SS G_CDS: 3.87 Total: -39.43 kcal Atomic # 7 Polarization: -73.56 SS G_CDS: -3.89 Total: -77.45 kcal Atomic # 8 Polarization: -48.01 SS G_CDS: -4.58 Total: -52.59 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Atomic # 16 Polarization: 38.05 SS G_CDS: -0.28 Total: 37.78 kcal Total: -81.55 -1.85 -83.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309361036.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.766 kcal (2) G-P(sol) polarization free energy of solvation -81.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds