Wall clock time and date at job start Mon Mar 30 2020 01:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 113.99965 * 2 1 4 4 C 1.53006 * 109.46746 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46846 * 65.00178 * 4 3 2 6 6 C 1.37096 * 119.99749 * 264.53182 * 5 4 3 7 7 H 1.08002 * 120.00084 * 145.78591 * 6 5 4 8 8 C 1.38952 * 120.00291 * 325.78942 * 6 5 4 9 9 N 1.31411 * 119.99973 * 338.02970 * 8 6 5 10 10 Si 1.86804 * 119.99973 * 158.03460 * 8 6 5 11 11 H 1.48500 * 109.47399 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46846 * 120.00133 * 10 8 6 13 13 H 1.48496 * 109.46788 * 239.99723 * 10 8 6 14 14 C 1.34779 * 120.00444 * 84.54117 * 5 4 3 15 15 O 1.21292 * 119.99701 * 359.97438 * 14 5 4 16 16 C 1.50693 * 120.00237 * 179.97438 * 14 5 4 17 17 H 1.09000 * 113.12431 * 312.36810 * 16 14 5 18 18 C 1.52883 * 113.98956 * 179.97438 * 16 14 5 19 19 C 1.50762 * 89.76619 * 246.05385 * 18 16 14 20 20 C 1.38231 * 149.34692 * 179.97438 * 19 18 16 21 21 C 1.38176 * 120.12856 * 180.02562 * 20 19 18 22 22 C 1.38234 * 119.74900 * 0.02562 * 21 20 19 23 23 C 1.37977 * 120.17777 * 359.97438 * 22 21 20 24 24 C 1.38362 * 90.24688 * 359.97438 * 19 18 16 25 25 H 1.09003 * 109.47022 * 300.00346 * 1 2 3 26 26 H 1.09002 * 109.46481 * 59.99810 * 1 2 3 27 27 H 1.08993 * 109.47248 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47692 * 59.99959 * 3 2 1 29 29 H 1.09003 * 109.47304 * 299.99434 * 3 2 1 30 30 H 1.08994 * 109.47291 * 304.99759 * 4 3 2 31 31 H 1.08998 * 109.46791 * 184.99769 * 4 3 2 32 32 H 0.96995 * 119.99906 * 179.97438 * 9 8 6 33 33 H 1.09005 * 113.16681 * 130.83322 * 18 16 14 34 34 H 1.08996 * 113.22214 * 1.29020 * 18 16 14 35 35 H 1.08002 * 119.93207 * 0.03129 * 20 19 18 36 36 H 1.08003 * 120.12070 * 180.02562 * 21 20 19 37 37 H 1.07998 * 119.91439 * 179.97438 * 22 21 20 38 38 H 1.07991 * 119.83873 * 179.74715 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.2058 -0.7868 -1.3026 7 1 3.9889 -1.3371 -2.2063 8 6 4.7169 -1.4479 -0.1925 9 7 5.3750 -0.7772 0.7263 10 14 4.4688 -3.2900 -0.0060 11 1 3.7015 -3.8062 -1.1679 12 1 5.7908 -3.9640 0.0525 13 1 3.7176 -3.5640 1.2452 14 6 4.1574 1.3206 -2.3514 15 8 3.9544 2.5156 -2.3057 16 6 4.6117 0.6822 -3.6386 17 1 5.4598 0.0102 -3.5071 18 6 4.7717 1.6661 -4.7978 19 6 3.6310 0.9932 -5.5182 20 6 2.8027 0.9149 -6.6221 21 6 1.8216 -0.0560 -6.6855 22 6 1.6712 -0.9485 -5.6407 23 6 2.4975 -0.8714 -4.5383 24 6 3.4864 0.1023 -4.4696 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6887 1.8464 0.8899 29 1 1.6887 1.8464 -0.8900 30 1 3.8508 0.5684 0.8427 31 1 3.9785 2.1764 0.0902 32 1 5.7315 -1.2386 1.5014 33 1 5.7251 1.5661 -5.3167 34 1 4.5544 2.6972 -4.5194 35 1 2.9227 1.6140 -7.4365 36 1 1.1747 -0.1173 -7.5482 37 1 0.9050 -1.7082 -5.6873 38 1 2.3725 -1.5688 -3.7233 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316929857.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:56 Heat of formation + Delta-G solvation = -7.582643 kcal Electronic energy + Delta-G solvation = -21858.404491 eV Core-core repulsion = 18667.768820 eV Total energy + Delta-G solvation = -3190.635671 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.33556 -38.24338 -36.90657 -35.03445 -34.36472 -31.58130 -30.43982 -29.34208 -27.06935 -25.86107 -24.98044 -24.25956 -22.12376 -21.18606 -20.01042 -18.82712 -17.03578 -16.40750 -16.15035 -15.43818 -15.32101 -14.83240 -14.63645 -14.34442 -14.15062 -13.93845 -13.53962 -13.13868 -12.60726 -12.51209 -12.00354 -11.96453 -11.54750 -11.50296 -11.29862 -11.16768 -11.05640 -10.97082 -10.61105 -10.37296 -10.31139 -10.05790 -9.87875 -9.17308 -8.95427 -8.74483 -8.39018 -7.97543 -7.52648 -6.34901 -3.97135 1.71075 1.79091 3.15406 3.27558 3.31327 3.76318 4.11113 4.19934 4.51725 4.62459 4.78919 4.95896 5.12964 5.24918 5.32791 5.49191 5.67106 5.73814 5.83750 5.93904 5.99432 6.04007 6.08969 6.11315 6.13251 6.32984 6.35363 6.39849 6.51635 6.67744 6.74553 6.76657 6.86968 7.22689 7.29263 7.39953 7.51069 7.80820 7.98934 8.40341 9.11977 9.51605 9.93038 10.67916 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.015092 B = 0.007173 C = 0.006942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.851543 B = 3902.366004 C = 4032.633065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.364 6.364 3 C 0.053 3.947 4 C 0.113 3.887 5 N -0.420 5.420 6 C -0.320 4.320 7 H 0.090 0.910 8 C 0.048 3.952 9 N -0.861 5.861 10 Si 0.913 3.087 11 H -0.268 1.268 12 H -0.285 1.285 13 H -0.279 1.279 14 C 0.482 3.518 15 O -0.607 6.607 16 C -0.049 4.049 17 H 0.119 0.881 18 C -0.060 4.060 19 C -0.130 4.130 20 C -0.100 4.100 21 C -0.126 4.126 22 C -0.127 4.127 23 C -0.091 4.091 24 C -0.093 4.093 25 H 0.030 0.970 26 H 0.031 0.969 27 H 0.077 0.923 28 H 0.039 0.961 29 H 0.040 0.960 30 H 0.118 0.882 31 H 0.069 0.931 32 H 0.268 0.732 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.113 0.887 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.527 -0.427 -6.885 8.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.025 4.025 4 C -0.011 4.011 5 N -0.136 5.136 6 C -0.448 4.448 7 H 0.108 0.892 8 C -0.157 4.157 9 N -0.498 5.498 10 Si 0.740 3.260 11 H -0.192 1.192 12 H -0.211 1.211 13 H -0.205 1.205 14 C 0.270 3.730 15 O -0.494 6.494 16 C -0.070 4.070 17 H 0.137 0.863 18 C -0.097 4.097 19 C -0.130 4.130 20 C -0.118 4.118 21 C -0.144 4.144 22 C -0.145 4.145 23 C -0.109 4.109 24 C -0.093 4.093 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.095 0.905 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.136 0.864 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.102 0.898 34 H 0.120 0.880 35 H 0.131 0.869 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.429 -0.076 -6.637 8.575 hybrid contribution -0.532 -0.899 0.256 1.076 sum -5.961 -0.976 -6.381 8.787 Atomic orbital electron populations 1.22638 0.83461 1.01685 0.98823 1.88122 1.17342 1.27753 1.95038 1.23024 0.96564 0.84305 0.98618 1.21513 0.89179 0.99121 0.91291 1.43305 1.55456 1.07372 1.07492 1.19394 1.42040 0.81999 1.01374 0.89207 1.25236 0.94009 0.99875 0.96603 1.69915 1.31133 1.37092 1.11702 0.86102 0.77904 0.83209 0.78781 1.19202 1.21087 1.20517 1.19715 0.81658 0.86016 0.85593 1.90501 1.58017 1.15274 1.85609 1.21124 0.96615 0.96467 0.92758 0.86339 1.21531 0.95004 1.00634 0.92502 1.21885 0.98013 0.98476 0.94671 1.20063 0.95579 0.99107 0.97023 1.20886 0.98577 0.96120 0.98847 1.20880 0.99693 0.99780 0.94133 1.20744 0.94229 0.98041 0.97879 1.22107 0.96259 0.95051 0.95917 0.95180 0.95021 0.90456 0.94321 0.94130 0.86444 0.91246 0.92149 0.89819 0.88012 0.86893 0.86243 0.86308 0.85976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.36 -7.87 10.44 -35.23 -0.37 -8.24 16 3 C 0.05 1.12 6.24 37.16 0.23 1.35 16 4 C 0.11 2.71 5.29 -4.04 -0.02 2.69 16 5 N -0.42 -10.55 2.51 -114.81 -0.29 -10.84 16 6 C -0.32 -8.08 8.33 -14.93 -0.12 -8.20 16 7 H 0.09 2.22 6.12 -52.49 -0.32 1.90 16 8 C 0.05 1.22 4.92 -17.47 -0.09 1.13 16 9 N -0.86 -22.55 11.34 55.50 0.63 -21.92 16 10 Si 0.91 19.96 29.61 -169.99 -5.03 14.92 16 11 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 13 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 14 C 0.48 11.79 7.16 -10.99 -0.08 11.71 16 15 O -0.61 -15.92 15.40 5.55 0.09 -15.83 16 16 C -0.05 -1.02 3.16 -92.63 -0.29 -1.31 16 17 H 0.12 2.42 7.85 -51.93 -0.41 2.01 16 18 C -0.06 -1.07 7.54 -31.55 -0.24 -1.31 16 19 C -0.13 -2.34 7.60 -104.55 -0.79 -3.13 16 20 C -0.10 -1.54 10.04 -39.61 -0.40 -1.94 16 21 C -0.13 -1.81 10.06 -39.61 -0.40 -2.21 16 22 C -0.13 -1.96 10.03 -39.68 -0.40 -2.35 16 23 C -0.09 -1.67 9.84 -39.41 -0.39 -2.06 16 24 C -0.09 -1.82 6.39 -107.59 -0.69 -2.51 16 25 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.12 3.01 5.36 -51.93 -0.28 2.73 16 31 H 0.07 1.67 7.59 -51.93 -0.39 1.28 16 32 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 33 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.10 1.94 7.04 -51.93 -0.37 1.58 16 35 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 36 H 0.12 1.33 8.06 -52.48 -0.42 0.90 16 37 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 38 H 0.12 2.29 7.48 -52.49 -0.39 1.90 16 LS Contribution 320.99 15.07 4.84 4.84 Total: -1.00 -29.59 320.99 -7.80 -37.39 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -5.10 Total: 6.19 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -2.56 Total: -6.51 kcal Atomic # 7 Polarization: -33.09 SS G_CDS: 0.34 Total: -32.75 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.28 Total: -24.07 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.03 Total: 14.92 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.59 -7.80 -37.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316929857.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.804 kcal (2) G-P(sol) polarization free energy of solvation -29.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds