Wall clock time and date at job start Mon Mar 30 2020 01:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 113.99965 * 2 1 4 4 C 1.53006 * 109.46746 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46846 * 65.00178 * 4 3 2 6 6 C 1.37096 * 119.99749 * 264.53182 * 5 4 3 7 7 H 1.08002 * 120.00084 * 145.78591 * 6 5 4 8 8 C 1.38952 * 120.00291 * 325.78942 * 6 5 4 9 9 N 1.31411 * 119.99973 * 338.02970 * 8 6 5 10 10 Si 1.86804 * 119.99973 * 158.03460 * 8 6 5 11 11 H 1.48500 * 109.47399 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46846 * 120.00133 * 10 8 6 13 13 H 1.48496 * 109.46788 * 239.99723 * 10 8 6 14 14 C 1.34779 * 120.00444 * 84.54117 * 5 4 3 15 15 O 1.21292 * 119.99701 * 359.97438 * 14 5 4 16 16 C 1.50693 * 120.00237 * 179.97438 * 14 5 4 17 17 H 1.09000 * 113.12431 * 312.36810 * 16 14 5 18 18 C 1.52883 * 113.98956 * 179.97438 * 16 14 5 19 19 C 1.50762 * 89.76619 * 246.05385 * 18 16 14 20 20 C 1.38231 * 149.34692 * 179.97438 * 19 18 16 21 21 C 1.38176 * 120.12856 * 180.02562 * 20 19 18 22 22 C 1.38234 * 119.74900 * 0.02562 * 21 20 19 23 23 C 1.37977 * 120.17777 * 359.97438 * 22 21 20 24 24 C 1.38362 * 90.24688 * 359.97438 * 19 18 16 25 25 H 1.09003 * 109.47022 * 300.00346 * 1 2 3 26 26 H 1.09002 * 109.46481 * 59.99810 * 1 2 3 27 27 H 1.08993 * 109.47248 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47692 * 59.99959 * 3 2 1 29 29 H 1.09003 * 109.47304 * 299.99434 * 3 2 1 30 30 H 1.08994 * 109.47291 * 304.99759 * 4 3 2 31 31 H 1.08998 * 109.46791 * 184.99769 * 4 3 2 32 32 H 0.96995 * 119.99906 * 179.97438 * 9 8 6 33 33 H 1.09005 * 113.16681 * 130.83322 * 18 16 14 34 34 H 1.08996 * 113.22214 * 1.29020 * 18 16 14 35 35 H 1.08002 * 119.93207 * 0.03129 * 20 19 18 36 36 H 1.08003 * 120.12070 * 180.02562 * 21 20 19 37 37 H 1.07998 * 119.91439 * 179.97438 * 22 21 20 38 38 H 1.07991 * 119.83873 * 179.74715 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.2058 -0.7868 -1.3026 7 1 3.9889 -1.3371 -2.2063 8 6 4.7169 -1.4479 -0.1925 9 7 5.3750 -0.7772 0.7263 10 14 4.4688 -3.2900 -0.0060 11 1 3.7015 -3.8062 -1.1679 12 1 5.7908 -3.9640 0.0525 13 1 3.7176 -3.5640 1.2452 14 6 4.1574 1.3206 -2.3514 15 8 3.9544 2.5156 -2.3057 16 6 4.6117 0.6822 -3.6386 17 1 5.4598 0.0102 -3.5071 18 6 4.7717 1.6661 -4.7978 19 6 3.6310 0.9932 -5.5182 20 6 2.8027 0.9149 -6.6221 21 6 1.8216 -0.0560 -6.6855 22 6 1.6712 -0.9485 -5.6407 23 6 2.4975 -0.8714 -4.5383 24 6 3.4864 0.1023 -4.4696 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6887 1.8464 0.8899 29 1 1.6887 1.8464 -0.8900 30 1 3.8508 0.5684 0.8427 31 1 3.9785 2.1764 0.0902 32 1 5.7315 -1.2386 1.5014 33 1 5.7251 1.5661 -5.3167 34 1 4.5544 2.6972 -4.5194 35 1 2.9227 1.6140 -7.4365 36 1 1.1747 -0.1173 -7.5482 37 1 0.9050 -1.7082 -5.6873 38 1 2.3725 -1.5688 -3.7233 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316929857.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:56 Heat of formation + Delta-G solvation = -24.032062 kcal Electronic energy + Delta-G solvation = -21859.117791 eV Core-core repulsion = 18667.768820 eV Total energy + Delta-G solvation = -3191.348972 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.82254 -39.96277 -38.53807 -36.74889 -35.95451 -33.52874 -31.77624 -31.03197 -28.45339 -27.33407 -26.77950 -25.86184 -23.71859 -22.65077 -21.50253 -20.60128 -18.75826 -18.14234 -17.58842 -17.06852 -16.99703 -16.40581 -16.25910 -16.01540 -15.68618 -15.45368 -15.08567 -14.83445 -14.00306 -13.81694 -13.64876 -13.39860 -13.30591 -13.01205 -12.97297 -12.83208 -12.69010 -12.51003 -12.41216 -12.06247 -11.81867 -11.76458 -11.29692 -11.01939 -10.61695 -10.47794 -9.68871 -9.49239 -9.40055 -8.28441 -5.95931 0.42198 0.51045 1.39167 1.47748 1.58770 1.93455 2.32904 2.79988 2.95030 3.00720 3.14474 3.37533 3.61859 3.76384 4.17292 4.22175 4.24606 4.27880 4.42075 4.49900 4.51115 4.58546 4.60784 4.70272 4.76481 4.79649 4.87029 4.87853 5.00872 5.15265 5.23982 5.34174 5.52367 5.53201 5.62693 5.90222 5.96545 6.14582 6.36990 6.45098 7.16176 7.58952 8.00403 8.75368 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.015092 B = 0.007173 C = 0.006942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.851543 B = 3902.366004 C = 4032.633065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.395 6.395 3 C 0.066 3.934 4 C 0.109 3.891 5 N -0.430 5.430 6 C -0.327 4.327 7 H 0.090 0.910 8 C 0.010 3.990 9 N -0.891 5.891 10 Si 0.973 3.027 11 H -0.261 1.261 12 H -0.279 1.279 13 H -0.280 1.280 14 C 0.470 3.530 15 O -0.634 6.634 16 C -0.059 4.059 17 H 0.112 0.888 18 C -0.050 4.050 19 C -0.139 4.139 20 C -0.099 4.099 21 C -0.113 4.113 22 C -0.124 4.124 23 C -0.112 4.112 24 C -0.128 4.128 25 H 0.053 0.947 26 H 0.035 0.965 27 H 0.095 0.905 28 H 0.067 0.933 29 H 0.026 0.974 30 H 0.102 0.898 31 H 0.057 0.943 32 H 0.271 0.729 33 H 0.112 0.888 34 H 0.085 0.915 35 H 0.145 0.855 36 H 0.163 0.837 37 H 0.149 0.851 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.241 -1.462 -8.876 11.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.314 6.314 3 C -0.012 4.012 4 C -0.015 4.015 5 N -0.146 5.146 6 C -0.455 4.455 7 H 0.108 0.892 8 C -0.193 4.193 9 N -0.529 5.529 10 Si 0.798 3.202 11 H -0.185 1.185 12 H -0.205 1.205 13 H -0.206 1.206 14 C 0.260 3.740 15 O -0.523 6.523 16 C -0.080 4.080 17 H 0.130 0.870 18 C -0.087 4.087 19 C -0.139 4.139 20 C -0.117 4.117 21 C -0.131 4.131 22 C -0.142 4.142 23 C -0.130 4.130 24 C -0.128 4.128 25 H 0.071 0.929 26 H 0.054 0.946 27 H 0.114 0.886 28 H 0.085 0.915 29 H 0.044 0.956 30 H 0.120 0.880 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.130 0.870 34 H 0.104 0.896 35 H 0.163 0.837 36 H 0.181 0.819 37 H 0.167 0.833 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.149 -1.117 -8.632 11.264 hybrid contribution -0.068 -0.558 0.839 1.010 sum -7.217 -1.675 -7.793 10.753 Atomic orbital electron populations 1.22883 0.80684 1.03383 1.00124 1.88055 1.20419 1.27656 1.95280 1.22779 0.94592 0.84645 0.99165 1.21474 0.91365 0.97926 0.90701 1.43508 1.55554 1.07597 1.07902 1.19534 1.42127 0.82173 1.01652 0.89245 1.25965 0.93546 1.03601 0.96170 1.69999 1.31963 1.38662 1.12253 0.85185 0.77883 0.78550 0.78606 1.18523 1.20537 1.20598 1.20380 0.81050 0.85871 0.86699 1.90455 1.59178 1.16360 1.86308 1.21073 0.97343 0.97682 0.91900 0.87033 1.21418 0.96859 0.98822 0.91570 1.21986 0.98528 0.97975 0.95395 1.20517 0.94675 0.99720 0.96797 1.21407 0.97914 0.94324 0.99416 1.21251 0.99268 1.00522 0.93146 1.20852 0.95186 0.98015 0.98968 1.22051 0.97212 0.97024 0.96559 0.92891 0.94599 0.88631 0.91488 0.95610 0.88011 0.92479 0.91933 0.87028 0.89629 0.83709 0.81915 0.83339 0.87566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 11.01 113.37 1.25 2.05 16 2 O -0.40 -17.03 10.44 -148.98 -1.56 -18.59 16 3 C 0.07 2.84 6.24 71.98 0.45 3.29 16 4 C 0.11 5.46 5.29 86.38 0.46 5.92 16 5 N -0.43 -22.44 2.51 -635.54 -1.60 -24.04 16 6 C -0.33 -16.99 8.33 84.04 0.70 -16.29 16 7 H 0.09 4.57 6.12 -2.91 -0.02 4.55 16 8 C 0.01 0.50 4.92 84.93 0.42 0.92 16 9 N -0.89 -47.82 11.34 21.66 0.25 -47.58 16 10 Si 0.97 41.20 29.61 68.60 2.03 43.23 16 11 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 12 H -0.28 -11.53 7.11 99.48 0.71 -10.83 16 13 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 14 C 0.47 24.01 7.16 87.65 0.63 24.64 16 15 O -0.63 -34.69 15.40 -3.07 -0.05 -34.74 16 16 C -0.06 -2.55 3.16 -12.09 -0.04 -2.59 16 17 H 0.11 4.79 7.85 -2.39 -0.02 4.77 16 18 C -0.05 -1.79 7.54 27.48 0.21 -1.58 16 19 C -0.14 -4.81 7.60 -19.82 -0.15 -4.96 16 20 C -0.10 -2.72 10.04 22.25 0.22 -2.50 16 21 C -0.11 -2.74 10.06 22.25 0.22 -2.52 16 22 C -0.12 -3.46 10.03 22.21 0.22 -3.24 16 23 C -0.11 -4.07 9.84 22.38 0.22 -3.85 16 24 C -0.13 -5.06 6.39 -21.78 -0.14 -5.20 16 25 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 28 H 0.07 2.46 8.14 -2.39 -0.02 2.45 16 29 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.10 5.42 5.36 -2.39 -0.01 5.41 16 31 H 0.06 2.90 7.59 -2.39 -0.02 2.88 16 32 H 0.27 13.68 8.31 -92.71 -0.77 12.91 16 33 H 0.11 3.26 8.14 -2.38 -0.02 3.24 16 34 H 0.09 3.34 7.04 -2.39 -0.02 3.32 16 35 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 36 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 37 H 0.15 3.19 8.06 -2.91 -0.02 3.16 16 38 H 0.11 4.07 7.48 -2.92 -0.02 4.05 16 Total: -1.00 -65.88 320.99 4.81 -61.08 By element: Atomic # 1 Polarization: 25.49 SS G_CDS: 1.06 Total: 26.55 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: 4.67 Total: -5.91 kcal Atomic # 7 Polarization: -70.27 SS G_CDS: -1.35 Total: -71.62 kcal Atomic # 8 Polarization: -51.73 SS G_CDS: -1.60 Total: -53.33 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Total: -65.88 4.81 -61.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316929857.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.043 kcal (2) G-P(sol) polarization free energy of solvation -65.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds