Wall clock time and date at job start Mon Mar 30 2020 01:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 113.99954 * 2 1 4 4 C 1.52999 * 109.47251 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47513 * 64.99584 * 4 3 2 6 6 C 1.37102 * 120.00005 * 264.62524 * 5 4 3 7 7 H 1.08001 * 119.99811 * 145.63471 * 6 5 4 8 8 C 1.38947 * 120.00010 * 325.63810 * 6 5 4 9 9 N 1.31416 * 120.00095 * 338.11899 * 8 6 5 10 10 Si 1.86797 * 119.99857 * 158.11990 * 8 6 5 11 11 H 1.48494 * 109.47471 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47360 * 119.99855 * 10 8 6 13 13 H 1.48506 * 109.46923 * 239.99658 * 10 8 6 14 14 C 1.34777 * 119.99872 * 84.62299 * 5 4 3 15 15 O 1.21298 * 119.99787 * 0.02562 * 14 5 4 16 16 C 1.50694 * 119.99832 * 180.02562 * 14 5 4 17 17 H 1.09002 * 112.88723 * 51.67321 * 16 14 5 18 18 C 1.52262 * 113.58826 * 182.83567 * 16 14 5 19 19 C 1.50553 * 87.22903 * 114.59184 * 18 16 14 20 20 C 1.38814 * 147.30642 * 180.02562 * 19 18 16 21 21 C 1.38066 * 120.09589 * 179.97438 * 20 19 18 22 22 C 1.38226 * 119.98065 * 0.05350 * 21 20 19 23 23 C 1.38075 * 119.98035 * 359.97438 * 22 21 20 24 24 C 1.37726 * 92.77378 * 0.02562 * 19 18 16 25 25 H 1.09000 * 109.47288 * 300.00361 * 1 2 3 26 26 H 1.08997 * 109.46882 * 60.00565 * 1 2 3 27 27 H 1.09005 * 109.47085 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47491 * 59.99719 * 3 2 1 29 29 H 1.09000 * 109.47188 * 299.99791 * 3 2 1 30 30 H 1.09009 * 109.47052 * 305.00127 * 4 3 2 31 31 H 1.09002 * 109.47585 * 185.00230 * 4 3 2 32 32 H 0.96999 * 119.99763 * 180.02562 * 9 8 6 33 33 H 1.09002 * 113.59034 * 0.02562 * 18 16 14 34 34 H 1.08994 * 113.66320 * 229.18875 * 18 16 14 35 35 H 1.08007 * 119.94623 * 359.97438 * 20 19 18 36 36 H 1.07999 * 120.00757 * 180.02562 * 21 20 19 37 37 H 1.07999 * 120.00954 * 180.26052 * 22 21 20 38 38 H 1.08005 * 119.95213 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.2032 -0.7866 -1.3055 7 1 3.9833 -1.3363 -2.2088 8 6 4.7165 -1.4485 -0.1969 9 7 5.3763 -0.7786 0.7212 10 14 4.4689 -3.2907 -0.0116 11 1 3.6983 -3.8058 -1.1718 12 1 5.7909 -3.9649 0.0438 13 1 3.7200 -3.5660 1.2409 14 6 4.1572 1.3218 -2.3527 15 8 3.9563 2.5171 -2.3058 16 6 4.6095 0.6836 -3.6407 17 1 3.9966 -0.1704 -3.9288 18 6 4.8334 1.6811 -4.7691 19 6 6.2912 1.3097 -4.7100 20 6 7.5679 1.5045 -5.2188 21 6 8.6344 0.7953 -4.7032 22 6 8.4310 -0.1111 -3.6796 23 6 7.1614 -0.3062 -3.1730 24 6 6.0887 0.4070 -3.6897 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6886 1.8464 0.8899 29 1 1.6886 1.8464 -0.8900 30 1 3.8514 0.5682 0.8410 31 1 3.9785 2.1765 0.0890 32 1 5.7349 -1.2408 1.4949 33 1 4.6348 2.7142 -4.4839 34 1 4.3491 1.3997 -5.7042 35 1 7.7271 2.2120 -6.0193 36 1 9.6272 0.9483 -5.0999 37 1 9.2655 -0.6630 -3.2731 38 1 7.0029 -1.0148 -2.3735 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316929867.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:59 Heat of formation + Delta-G solvation = -6.300266 kcal Electronic energy + Delta-G solvation = -21754.937866 eV Core-core repulsion = 18564.357803 eV Total energy + Delta-G solvation = -3190.580063 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.34914 -38.21652 -36.90787 -35.01285 -34.35056 -31.56237 -30.26867 -29.32273 -26.98222 -25.86188 -24.96764 -24.21739 -22.11368 -21.09365 -19.90087 -18.82412 -17.01546 -16.33178 -16.13306 -15.47995 -15.28688 -14.72549 -14.51700 -14.31776 -14.24030 -13.93829 -13.36575 -13.14177 -12.51838 -12.23474 -12.04538 -11.99465 -11.56615 -11.45519 -11.25808 -11.14391 -11.06321 -10.94058 -10.58888 -10.34259 -10.28864 -10.02912 -9.86501 -9.14903 -8.96171 -8.70717 -8.23196 -7.89067 -7.51382 -6.32054 -3.95173 1.85469 1.93321 3.16048 3.28196 3.31925 3.80732 4.15715 4.30618 4.50491 4.70203 4.86024 5.02989 5.14105 5.33215 5.46620 5.61637 5.66009 5.72326 5.84301 5.98007 5.99119 6.06107 6.08926 6.17963 6.28906 6.34504 6.38014 6.43075 6.63016 6.71556 6.77727 6.88439 7.04022 7.29582 7.39940 7.50205 7.54758 7.80838 7.99165 8.39867 9.13325 9.52008 9.93351 10.70613 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.016866 B = 0.007460 C = 0.005775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.731781 B = 3752.671318 C = 4847.596303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.053 3.947 4 C 0.113 3.887 5 N -0.421 5.421 6 C -0.317 4.317 7 H 0.088 0.912 8 C 0.049 3.951 9 N -0.861 5.861 10 Si 0.910 3.090 11 H -0.268 1.268 12 H -0.285 1.285 13 H -0.280 1.280 14 C 0.480 3.520 15 O -0.607 6.607 16 C -0.047 4.047 17 H 0.106 0.894 18 C -0.063 4.063 19 C -0.133 4.133 20 C -0.106 4.106 21 C -0.127 4.127 22 C -0.128 4.128 23 C -0.073 4.073 24 C -0.082 4.082 25 H 0.030 0.970 26 H 0.032 0.968 27 H 0.077 0.923 28 H 0.039 0.961 29 H 0.041 0.959 30 H 0.118 0.882 31 H 0.068 0.932 32 H 0.268 0.732 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.111 0.889 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.836 0.084 -5.432 5.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.025 4.025 4 C -0.011 4.011 5 N -0.137 5.137 6 C -0.445 4.445 7 H 0.105 0.895 8 C -0.156 4.156 9 N -0.498 5.498 10 Si 0.737 3.263 11 H -0.193 1.193 12 H -0.211 1.211 13 H -0.206 1.206 14 C 0.269 3.731 15 O -0.494 6.494 16 C -0.068 4.068 17 H 0.124 0.876 18 C -0.100 4.100 19 C -0.133 4.133 20 C -0.125 4.125 21 C -0.145 4.145 22 C -0.146 4.146 23 C -0.091 4.091 24 C -0.083 4.083 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.096 0.904 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.136 0.864 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.122 0.878 34 H 0.102 0.898 35 H 0.129 0.871 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.717 0.437 -5.180 5.248 hybrid contribution -0.289 -0.852 0.345 0.964 sum -1.006 -0.416 -4.835 4.956 Atomic orbital electron populations 1.22643 0.83446 1.01710 0.98839 1.88129 1.17358 1.27788 1.95042 1.23028 0.96546 0.84270 0.98661 1.21504 0.89157 0.99109 0.91343 1.43307 1.55498 1.07379 1.07483 1.19290 1.41973 0.81829 1.01414 0.89475 1.25172 0.94163 0.99614 0.96649 1.69921 1.31210 1.36911 1.11783 0.86148 0.77906 0.83470 0.78761 1.19268 1.21100 1.20568 1.19796 0.81244 0.86087 0.85985 1.90501 1.58066 1.15161 1.85664 1.20845 0.92975 0.98324 0.94680 0.87590 1.21443 0.89427 1.01596 0.97554 1.21981 0.95038 0.98395 0.97928 1.20255 0.90956 1.00551 1.00689 1.20840 0.97937 0.97736 0.98011 1.20931 0.96535 0.99505 0.97671 1.20685 0.90805 0.98922 0.98710 1.21354 0.94820 0.96220 0.95859 0.95185 0.94974 0.90449 0.94312 0.94055 0.86449 0.91346 0.92225 0.87841 0.89796 0.87133 0.86485 0.86303 0.85310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.37 -7.75 10.43 -35.23 -0.37 -8.11 16 3 C 0.05 1.10 6.24 37.16 0.23 1.33 16 4 C 0.11 2.70 5.29 -4.04 -0.02 2.68 16 5 N -0.42 -10.50 2.51 -114.80 -0.29 -10.79 16 6 C -0.32 -7.93 8.32 -14.93 -0.12 -8.05 16 7 H 0.09 2.14 6.82 -52.49 -0.36 1.78 16 8 C 0.05 1.23 4.93 -17.47 -0.09 1.14 16 9 N -0.86 -22.40 11.34 55.50 0.63 -21.77 16 10 Si 0.91 19.85 29.61 -169.99 -5.03 14.82 16 11 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 12 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 13 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 14 C 0.48 11.73 7.12 -10.99 -0.08 11.66 16 15 O -0.61 -15.89 15.36 5.54 0.09 -15.80 16 16 C -0.05 -0.99 3.14 -93.67 -0.29 -1.28 16 17 H 0.11 2.08 7.36 -51.93 -0.38 1.69 16 18 C -0.06 -1.14 7.69 -28.62 -0.22 -1.36 16 19 C -0.13 -2.49 7.42 -104.96 -0.78 -3.27 16 20 C -0.11 -1.74 10.06 -39.43 -0.40 -2.14 16 21 C -0.13 -1.97 10.04 -39.65 -0.40 -2.37 16 22 C -0.13 -2.17 10.04 -39.65 -0.40 -2.57 16 23 C -0.07 -1.46 10.06 -39.43 -0.40 -1.86 16 24 C -0.08 -1.69 6.68 -104.96 -0.70 -2.39 16 25 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.12 3.00 5.37 -51.92 -0.28 2.73 16 31 H 0.07 1.66 7.59 -51.93 -0.39 1.27 16 32 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 33 H 0.10 1.99 7.02 -51.93 -0.36 1.62 16 34 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.11 1.51 8.06 -52.48 -0.42 1.08 16 36 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 37 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 38 H 0.13 2.73 8.06 -52.48 -0.42 2.31 16 LS Contribution 322.18 15.07 4.86 4.86 Total: -1.00 -29.46 322.18 -7.81 -37.27 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -5.14 Total: 6.40 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -2.55 Total: -6.87 kcal Atomic # 7 Polarization: -32.90 SS G_CDS: 0.34 Total: -32.56 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.28 Total: -23.92 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.03 Total: 14.82 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.46 -7.81 -37.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316929867.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.970 kcal (2) G-P(sol) polarization free energy of solvation -29.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds