Wall clock time and date at job start Mon Mar 30 2020 01:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 113.99954 * 2 1 4 4 C 1.52999 * 109.47251 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47513 * 64.99584 * 4 3 2 6 6 C 1.37102 * 120.00005 * 264.62524 * 5 4 3 7 7 H 1.08001 * 119.99811 * 145.63471 * 6 5 4 8 8 C 1.38947 * 120.00010 * 325.63810 * 6 5 4 9 9 N 1.31416 * 120.00095 * 338.11899 * 8 6 5 10 10 Si 1.86797 * 119.99857 * 158.11990 * 8 6 5 11 11 H 1.48494 * 109.47471 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47360 * 119.99855 * 10 8 6 13 13 H 1.48506 * 109.46923 * 239.99658 * 10 8 6 14 14 C 1.34777 * 119.99872 * 84.62299 * 5 4 3 15 15 O 1.21298 * 119.99787 * 0.02562 * 14 5 4 16 16 C 1.50694 * 119.99832 * 180.02562 * 14 5 4 17 17 H 1.09002 * 112.88723 * 51.67321 * 16 14 5 18 18 C 1.52262 * 113.58826 * 182.83567 * 16 14 5 19 19 C 1.50553 * 87.22903 * 114.59184 * 18 16 14 20 20 C 1.38814 * 147.30642 * 180.02562 * 19 18 16 21 21 C 1.38066 * 120.09589 * 179.97438 * 20 19 18 22 22 C 1.38226 * 119.98065 * 0.05350 * 21 20 19 23 23 C 1.38075 * 119.98035 * 359.97438 * 22 21 20 24 24 C 1.37726 * 92.77378 * 0.02562 * 19 18 16 25 25 H 1.09000 * 109.47288 * 300.00361 * 1 2 3 26 26 H 1.08997 * 109.46882 * 60.00565 * 1 2 3 27 27 H 1.09005 * 109.47085 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47491 * 59.99719 * 3 2 1 29 29 H 1.09000 * 109.47188 * 299.99791 * 3 2 1 30 30 H 1.09009 * 109.47052 * 305.00127 * 4 3 2 31 31 H 1.09002 * 109.47585 * 185.00230 * 4 3 2 32 32 H 0.96999 * 119.99763 * 180.02562 * 9 8 6 33 33 H 1.09002 * 113.59034 * 0.02562 * 18 16 14 34 34 H 1.08994 * 113.66320 * 229.18875 * 18 16 14 35 35 H 1.08007 * 119.94623 * 359.97438 * 20 19 18 36 36 H 1.07999 * 120.00757 * 180.02562 * 21 20 19 37 37 H 1.07999 * 120.00954 * 180.26052 * 22 21 20 38 38 H 1.08005 * 119.95213 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.2032 -0.7866 -1.3055 7 1 3.9833 -1.3363 -2.2088 8 6 4.7165 -1.4485 -0.1969 9 7 5.3763 -0.7786 0.7212 10 14 4.4689 -3.2907 -0.0116 11 1 3.6983 -3.8058 -1.1718 12 1 5.7909 -3.9649 0.0438 13 1 3.7200 -3.5660 1.2409 14 6 4.1572 1.3218 -2.3527 15 8 3.9563 2.5171 -2.3058 16 6 4.6095 0.6836 -3.6407 17 1 3.9966 -0.1704 -3.9288 18 6 4.8334 1.6811 -4.7691 19 6 6.2912 1.3097 -4.7100 20 6 7.5679 1.5045 -5.2188 21 6 8.6344 0.7953 -4.7032 22 6 8.4310 -0.1111 -3.6796 23 6 7.1614 -0.3062 -3.1730 24 6 6.0887 0.4070 -3.6897 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6886 1.8464 0.8899 29 1 1.6886 1.8464 -0.8900 30 1 3.8514 0.5682 0.8410 31 1 3.9785 2.1765 0.0890 32 1 5.7349 -1.2408 1.4949 33 1 4.6348 2.7142 -4.4839 34 1 4.3491 1.3997 -5.7042 35 1 7.7271 2.2120 -6.0193 36 1 9.6272 0.9483 -5.0999 37 1 9.2655 -0.6630 -3.2731 38 1 7.0029 -1.0148 -2.3735 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316929867.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:59 Heat of formation + Delta-G solvation = -22.578063 kcal Electronic energy + Delta-G solvation = -21755.643724 eV Core-core repulsion = 18564.357803 eV Total energy + Delta-G solvation = -3191.285921 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.88381 -39.94677 -38.51562 -36.73972 -35.97556 -33.49938 -31.69403 -31.00128 -28.42086 -27.30250 -26.77388 -25.82362 -23.72854 -22.61518 -21.44345 -20.60541 -18.73814 -18.12243 -17.57041 -17.11559 -16.92434 -16.29425 -16.24259 -15.92075 -15.89794 -15.37206 -15.03168 -14.76836 -13.83318 -13.80677 -13.65622 -13.51870 -13.20903 -13.07127 -12.93717 -12.80572 -12.70393 -12.48904 -12.35281 -12.06468 -11.78909 -11.73197 -11.34438 -10.98494 -10.59268 -10.45592 -9.62016 -9.48771 -9.35402 -8.24773 -5.92652 0.47971 0.54893 1.39670 1.48153 1.58428 1.96767 2.33827 2.83633 2.97232 3.00459 3.21868 3.42464 3.66403 3.81279 4.20182 4.24344 4.27182 4.32954 4.42508 4.49272 4.53539 4.60197 4.62318 4.72823 4.78866 4.84380 4.88212 4.92638 5.05810 5.19532 5.29508 5.36009 5.53599 5.56422 5.67720 5.96824 5.98748 6.19135 6.39894 6.44843 7.18614 7.60163 8.01436 8.78830 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.016866 B = 0.007460 C = 0.005775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.731781 B = 3752.671318 C = 4847.596303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.066 3.934 4 C 0.109 3.891 5 N -0.430 5.430 6 C -0.321 4.321 7 H 0.087 0.913 8 C 0.014 3.986 9 N -0.890 5.890 10 Si 0.968 3.032 11 H -0.262 1.262 12 H -0.280 1.280 13 H -0.282 1.282 14 C 0.468 3.532 15 O -0.633 6.633 16 C -0.055 4.055 17 H 0.110 0.890 18 C -0.050 4.050 19 C -0.140 4.140 20 C -0.105 4.105 21 C -0.116 4.116 22 C -0.129 4.129 23 C -0.100 4.100 24 C -0.120 4.120 25 H 0.051 0.949 26 H 0.040 0.960 27 H 0.094 0.906 28 H 0.066 0.934 29 H 0.032 0.968 30 H 0.101 0.899 31 H 0.053 0.947 32 H 0.269 0.731 33 H 0.089 0.911 34 H 0.118 0.882 35 H 0.145 0.855 36 H 0.160 0.840 37 H 0.143 0.857 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.295 -0.335 -6.930 6.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C -0.012 4.012 4 C -0.014 4.014 5 N -0.146 5.146 6 C -0.449 4.449 7 H 0.104 0.896 8 C -0.188 4.188 9 N -0.528 5.528 10 Si 0.793 3.207 11 H -0.186 1.186 12 H -0.206 1.206 13 H -0.208 1.208 14 C 0.258 3.742 15 O -0.522 6.522 16 C -0.076 4.076 17 H 0.128 0.872 18 C -0.087 4.087 19 C -0.140 4.140 20 C -0.123 4.123 21 C -0.133 4.133 22 C -0.147 4.147 23 C -0.118 4.118 24 C -0.121 4.121 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.112 0.888 28 H 0.084 0.916 29 H 0.051 0.949 30 H 0.118 0.882 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.107 0.893 34 H 0.136 0.864 35 H 0.163 0.837 36 H 0.178 0.822 37 H 0.161 0.839 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.188 0.010 -6.684 6.686 hybrid contribution -0.419 -0.692 0.814 1.148 sum -0.607 -0.682 -5.869 5.940 Atomic orbital electron populations 1.22894 0.80600 1.03372 1.00281 1.88058 1.20500 1.27718 1.95312 1.22778 0.94302 0.84641 0.99454 1.21450 0.91585 0.97690 0.90711 1.43517 1.55549 1.07601 1.07898 1.19390 1.41967 0.81951 1.01590 0.89573 1.25836 0.93669 1.03103 0.96225 1.70011 1.32099 1.38403 1.12319 0.85259 0.77828 0.79068 0.78528 1.18620 1.20634 1.20751 1.20474 0.80636 0.85970 0.87126 1.90458 1.59151 1.16236 1.86401 1.20895 0.93687 0.99245 0.93752 0.87217 1.21365 0.89687 0.99863 0.97794 1.22150 0.96173 0.97986 0.97716 1.20715 0.89921 1.00641 1.00986 1.21335 0.99670 0.95819 0.96493 1.21254 0.95771 0.99839 0.97813 1.20711 0.92443 0.99510 0.99135 1.21452 0.94625 0.98209 0.97790 0.93033 0.94147 0.88753 0.91603 0.94946 0.88164 0.92903 0.92130 0.89306 0.86358 0.83699 0.82205 0.83895 0.88006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.75 11.01 113.37 1.25 2.00 16 2 O -0.40 -16.75 10.43 -148.98 -1.55 -18.31 16 3 C 0.07 2.77 6.24 71.98 0.45 3.22 16 4 C 0.11 5.45 5.29 86.38 0.46 5.90 16 5 N -0.43 -22.24 2.51 -635.51 -1.60 -23.83 16 6 C -0.32 -16.51 8.32 84.04 0.70 -15.81 16 7 H 0.09 4.35 6.82 -2.91 -0.02 4.33 16 8 C 0.01 0.72 4.93 84.92 0.42 1.14 16 9 N -0.89 -47.68 11.34 21.66 0.25 -47.44 16 10 Si 0.97 41.14 29.61 68.60 2.03 43.17 16 11 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 12 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 13 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 14 C 0.47 23.65 7.12 87.65 0.62 24.28 16 15 O -0.63 -34.30 15.36 -3.08 -0.05 -34.35 16 16 C -0.06 -2.34 3.14 -12.77 -0.04 -2.38 16 17 H 0.11 4.41 7.36 -2.39 -0.02 4.39 16 18 C -0.05 -1.77 7.69 29.37 0.23 -1.55 16 19 C -0.14 -5.05 7.42 -20.09 -0.15 -5.19 16 20 C -0.10 -3.09 10.06 22.37 0.22 -2.86 16 21 C -0.12 -3.15 10.04 22.23 0.22 -2.93 16 22 C -0.13 -4.13 10.04 22.23 0.22 -3.90 16 23 C -0.10 -4.04 10.06 22.37 0.22 -3.81 16 24 C -0.12 -5.01 6.68 -20.08 -0.13 -5.14 16 25 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.09 2.50 8.14 -2.38 -0.02 2.48 16 28 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.10 5.34 5.37 -2.38 -0.01 5.33 16 31 H 0.05 2.71 7.59 -2.39 -0.02 2.69 16 32 H 0.27 13.63 8.31 -92.71 -0.77 12.86 16 33 H 0.09 3.41 7.02 -2.39 -0.02 3.39 16 34 H 0.12 3.27 8.14 -2.39 -0.02 3.25 16 35 H 0.15 3.26 8.06 -2.91 -0.02 3.23 16 36 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 37 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 38 H 0.10 4.55 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -65.53 322.18 4.83 -60.70 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: 1.06 Total: 27.09 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: 4.70 Total: -7.04 kcal Atomic # 7 Polarization: -69.92 SS G_CDS: -1.35 Total: -71.27 kcal Atomic # 8 Polarization: -51.05 SS G_CDS: -1.60 Total: -52.65 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Total: -65.53 4.83 -60.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316929867.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.124 kcal (2) G-P(sol) polarization free energy of solvation -65.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds