Wall clock time and date at job start Mon Mar 30 2020 01:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86792 * 120.00454 * 2 1 4 4 H 1.48502 * 109.47136 * 269.99767 * 3 2 1 5 5 H 1.48498 * 109.47081 * 29.99580 * 3 2 1 6 6 H 1.48502 * 109.47286 * 149.99758 * 3 2 1 7 7 C 1.38956 * 119.99628 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00101 * 198.92539 * 7 2 1 9 9 N 1.37104 * 120.00013 * 18.92432 * 7 2 1 10 10 C 1.34777 * 120.00155 * 42.99476 * 9 7 2 11 11 O 1.21296 * 119.99518 * 0.02562 * 10 9 7 12 12 C 1.50692 * 120.00030 * 179.97438 * 10 9 7 13 13 H 1.09006 * 109.49640 * 60.06780 * 12 10 9 14 14 C 1.53115 * 109.49699 * 180.16185 * 12 10 9 15 15 C 1.53281 * 109.70970 * 189.85710 * 14 12 10 16 16 N 1.46479 * 108.69526 * 309.23363 * 15 14 12 17 17 C 1.34402 * 128.44682 * 197.35715 * 16 15 14 18 18 N 1.30782 * 108.55164 * 179.82175 * 17 16 15 19 19 C 1.34429 * 109.32328 * 0.06558 * 18 17 16 20 20 C 1.33855 * 107.79628 * 359.97438 * 19 18 17 21 21 C 1.50711 * 128.68304 * 179.97438 * 20 19 18 22 22 C 1.46502 * 119.99680 * 222.99681 * 9 7 2 23 23 C 1.52997 * 117.50165 * 5.00230 * 22 9 7 24 24 C 1.52998 * 117.49804 * 296.37749 * 22 9 7 25 25 H 0.97002 * 119.99709 * 354.94469 * 1 2 3 26 26 H 1.08995 * 109.43840 * 309.93098 * 14 12 10 27 27 H 1.09000 * 109.43164 * 69.83725 * 14 12 10 28 28 H 1.09007 * 109.60092 * 68.99158 * 15 14 12 29 29 H 1.08998 * 109.60876 * 189.46910 * 15 14 12 30 30 H 1.08001 * 125.72397 * 359.82901 * 17 16 15 31 31 H 1.07994 * 126.10070 * 179.97438 * 19 18 17 32 32 H 1.08999 * 109.73988 * 315.39453 * 21 20 19 33 33 H 1.09000 * 109.74304 * 76.06245 * 21 20 19 34 34 H 1.09003 * 115.54578 * 150.71052 * 22 9 7 35 35 H 1.09006 * 117.49828 * 0.02562 * 23 22 9 36 36 H 1.09001 * 117.50072 * 145.02161 * 23 22 9 37 37 H 1.09000 * 117.50086 * 214.97919 * 24 22 9 38 38 H 1.08997 * 117.49799 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4958 2.0462 -1.4001 5 1 1.4457 2.6526 0.6999 6 1 3.5457 1.4400 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0449 -1.2287 0.3039 9 7 1.3788 -2.3588 -0.3840 10 6 0.5734 -2.3597 -1.4647 11 8 0.4063 -1.3383 -2.0972 12 6 -0.1186 -3.6297 -1.8877 13 1 -0.7625 -3.9794 -1.0806 14 6 -0.9634 -3.3601 -3.1359 15 6 -1.8565 -4.5713 -3.4272 16 7 -1.0253 -5.7774 -3.4312 17 6 -1.3107 -6.9874 -3.9418 18 7 -0.2902 -7.7783 -3.7335 19 6 0.6728 -7.1004 -3.0853 20 6 0.2323 -5.8519 -2.8880 21 6 0.9315 -4.7027 -2.2085 22 6 1.5811 -3.5925 0.3798 23 6 2.4114 -3.5017 1.6616 24 6 2.9950 -4.1757 0.4182 25 1 -0.4850 0.8368 0.0740 26 1 -1.5868 -2.4817 -2.9691 27 1 -0.3062 -3.1820 -3.9870 28 1 -2.6207 -4.6565 -2.6545 29 1 -2.3302 -4.4506 -4.4014 30 1 -2.2289 -7.2607 -4.4406 31 1 1.6309 -7.4931 -2.7784 32 1 1.3972 -5.0488 -1.2858 33 1 1.6914 -4.2898 -2.8720 34 1 0.7472 -4.2944 0.3685 35 1 2.8069 -2.5239 1.9369 36 1 2.1239 -4.1439 2.4941 37 1 3.0915 -5.2614 0.4327 38 1 3.7746 -3.6418 -0.1251 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000329472973.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:49 Heat of formation + Delta-G solvation = 66.972902 kcal Electronic energy + Delta-G solvation = -22010.130309 eV Core-core repulsion = 18855.020360 eV Total energy + Delta-G solvation = -3155.109949 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.13348 -39.02269 -36.54295 -35.53958 -33.04515 -32.61531 -30.85904 -30.16860 -27.85435 -25.13606 -24.25731 -22.39110 -21.72980 -21.27602 -21.10881 -19.41610 -18.61851 -16.95859 -16.65473 -16.15943 -15.44557 -14.84340 -14.58486 -14.13892 -13.96142 -13.77252 -13.62067 -13.37024 -13.08612 -12.91066 -12.61402 -12.06247 -11.65794 -11.47068 -11.00097 -10.97297 -10.92233 -10.81124 -10.72505 -10.47452 -10.20994 -9.94562 -9.83594 -9.72558 -9.34188 -8.76242 -8.14570 -8.04624 -7.08995 -6.17163 -3.91488 2.25434 2.96733 3.27216 3.32364 3.34039 3.37211 4.01073 4.19283 4.56745 4.70291 4.73288 4.80672 4.88536 5.01234 5.16623 5.21574 5.38533 5.48665 5.50880 5.55618 5.67196 5.71372 5.77933 5.94540 6.02549 6.10224 6.12082 6.19410 6.36820 6.44913 6.52595 6.61295 6.70591 6.89475 6.93430 7.38970 7.57029 8.20693 8.22102 8.99955 9.08902 9.60438 10.21915 10.92022 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.025158 B = 0.005971 C = 0.005102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.694099 B = 4688.484827 C = 5486.933090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.074 3.926 3 Si 0.913 3.087 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.349 4.349 8 H 0.079 0.921 9 N -0.424 5.424 10 C 0.488 3.512 11 O -0.531 6.531 12 C -0.104 4.104 13 H 0.081 0.919 14 C -0.110 4.110 15 C 0.103 3.897 16 N -0.454 5.454 17 C 0.171 3.829 18 N -0.501 5.501 19 C -0.036 4.036 20 C -0.007 4.007 21 C -0.043 4.043 22 C 0.074 3.926 23 C -0.176 4.176 24 C -0.207 4.207 25 H 0.264 0.736 26 H 0.097 0.903 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.200 0.800 31 H 0.167 0.833 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.042 -9.584 -2.657 10.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.137 4.137 3 Si 0.740 3.260 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.476 4.476 8 H 0.096 0.904 9 N -0.144 5.144 10 C 0.275 3.725 11 O -0.408 6.408 12 C -0.126 4.126 13 H 0.099 0.901 14 C -0.148 4.148 15 C -0.019 4.019 16 N -0.137 5.137 17 C -0.111 4.111 18 N -0.219 5.219 19 C -0.182 4.182 20 C -0.122 4.122 21 C -0.081 4.081 22 C -0.032 4.032 23 C -0.213 4.213 24 C -0.246 4.246 25 H 0.074 0.926 26 H 0.116 0.884 27 H 0.093 0.907 28 H 0.102 0.898 29 H 0.108 0.892 30 H 0.217 0.783 31 H 0.184 0.816 32 H 0.118 0.882 33 H 0.101 0.899 34 H 0.121 0.879 35 H 0.125 0.875 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.384 -9.606 -3.311 10.437 hybrid contribution 0.130 1.547 0.397 1.603 sum -2.254 -8.059 -2.913 8.861 Atomic orbital electron populations 1.69826 1.06592 1.27414 1.42838 1.25211 0.94807 0.99372 0.94283 0.86208 0.79323 0.82150 0.78326 1.20341 1.21319 1.19870 1.18880 0.94898 0.83919 1.49898 0.90356 1.42751 1.43571 1.06278 1.21834 1.19468 0.83280 0.88255 0.81526 1.90535 1.62508 1.33689 1.54099 1.21317 0.97227 0.96218 0.97860 0.90093 1.21629 0.98604 0.96150 0.98392 1.22127 0.93668 0.83000 1.03131 1.45514 1.14240 1.11137 1.42858 1.24671 1.00944 0.81338 1.04111 1.70437 1.01111 1.32271 1.18122 1.21769 1.00192 0.90811 1.05475 1.21366 0.87348 0.98556 1.04918 1.20471 0.96593 0.90380 1.00679 1.21731 0.92671 0.91370 0.97461 1.23108 1.04502 1.02628 0.91087 1.23360 0.99167 0.98923 1.03164 0.92610 0.88426 0.90742 0.89793 0.89180 0.78310 0.81579 0.88232 0.89851 0.87950 0.87468 0.89804 0.89594 0.88940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.91 11.67 55.50 0.65 -23.26 16 2 C 0.07 2.02 4.36 -17.47 -0.08 1.94 16 3 Si 0.91 21.43 29.60 -169.99 -5.03 16.40 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.35 -9.16 7.92 -14.93 -0.12 -9.28 16 8 H 0.08 2.00 7.28 -52.49 -0.38 1.62 16 9 N -0.42 -10.01 2.85 -107.73 -0.31 -10.32 16 10 C 0.49 11.54 6.35 -10.99 -0.07 11.47 16 11 O -0.53 -14.76 13.48 5.54 0.07 -14.68 16 12 C -0.10 -1.86 1.76 -91.45 -0.16 -2.02 16 13 H 0.08 1.43 7.55 -51.93 -0.39 1.03 16 14 C -0.11 -1.74 4.66 -26.53 -0.12 -1.86 16 15 C 0.10 1.24 7.00 -3.91 -0.03 1.21 16 16 N -0.45 -6.26 3.13 -114.08 -0.36 -6.62 16 17 C 0.17 2.27 12.66 -90.72 -1.15 1.12 16 18 N -0.50 -7.85 11.27 -14.88 -0.17 -8.02 16 19 C -0.04 -0.54 11.84 -17.95 -0.21 -0.75 16 20 C -0.01 -0.10 6.57 -81.73 -0.54 -0.64 16 21 C -0.04 -0.68 5.08 -27.61 -0.14 -0.82 16 22 C 0.07 1.39 4.31 -67.93 -0.29 1.10 16 23 C -0.18 -3.03 9.80 -26.73 -0.26 -3.29 16 24 C -0.21 -3.31 9.49 -26.73 -0.25 -3.57 16 25 H 0.26 7.28 8.32 -40.82 -0.34 6.94 16 26 H 0.10 1.68 7.77 -51.93 -0.40 1.28 16 27 H 0.07 1.24 8.11 -51.93 -0.42 0.82 16 28 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.20 1.82 8.06 -52.49 -0.42 1.40 16 31 H 0.17 2.16 8.06 -52.49 -0.42 1.73 16 32 H 0.10 1.49 4.79 -51.93 -0.25 1.24 16 33 H 0.08 1.39 8.11 -51.93 -0.42 0.97 16 34 H 0.10 1.76 6.28 -51.93 -0.33 1.44 16 35 H 0.11 2.07 6.74 -51.93 -0.35 1.72 16 36 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 LS Contribution 306.89 15.07 4.62 4.62 Total: -1.00 -32.80 306.89 -8.98 -41.77 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -5.04 Total: 5.51 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -3.42 Total: -5.40 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: -0.18 Total: -48.22 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: 0.07 Total: -14.68 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.80 -8.98 -41.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329472973.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.747 kcal (2) G-P(sol) polarization free energy of solvation -32.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds