Wall clock time and date at job start Mon Mar 30 2020 01:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86792 * 120.00454 * 2 1 4 4 H 1.48502 * 109.47136 * 269.99767 * 3 2 1 5 5 H 1.48498 * 109.47081 * 29.99580 * 3 2 1 6 6 H 1.48502 * 109.47286 * 149.99758 * 3 2 1 7 7 C 1.38956 * 119.99628 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00101 * 198.92539 * 7 2 1 9 9 N 1.37104 * 120.00013 * 18.92432 * 7 2 1 10 10 C 1.34777 * 120.00155 * 42.99476 * 9 7 2 11 11 O 1.21296 * 119.99518 * 0.02562 * 10 9 7 12 12 C 1.50692 * 120.00030 * 179.97438 * 10 9 7 13 13 H 1.09006 * 109.49640 * 60.06780 * 12 10 9 14 14 C 1.53115 * 109.49699 * 180.16185 * 12 10 9 15 15 C 1.53281 * 109.70970 * 189.85710 * 14 12 10 16 16 N 1.46479 * 108.69526 * 309.23363 * 15 14 12 17 17 C 1.34402 * 128.44682 * 197.35715 * 16 15 14 18 18 N 1.30782 * 108.55164 * 179.82175 * 17 16 15 19 19 C 1.34429 * 109.32328 * 0.06558 * 18 17 16 20 20 C 1.33855 * 107.79628 * 359.97438 * 19 18 17 21 21 C 1.50711 * 128.68304 * 179.97438 * 20 19 18 22 22 C 1.46502 * 119.99680 * 222.99681 * 9 7 2 23 23 C 1.52997 * 117.50165 * 5.00230 * 22 9 7 24 24 C 1.52998 * 117.49804 * 296.37749 * 22 9 7 25 25 H 0.97002 * 119.99709 * 354.94469 * 1 2 3 26 26 H 1.08995 * 109.43840 * 309.93098 * 14 12 10 27 27 H 1.09000 * 109.43164 * 69.83725 * 14 12 10 28 28 H 1.09007 * 109.60092 * 68.99158 * 15 14 12 29 29 H 1.08998 * 109.60876 * 189.46910 * 15 14 12 30 30 H 1.08001 * 125.72397 * 359.82901 * 17 16 15 31 31 H 1.07994 * 126.10070 * 179.97438 * 19 18 17 32 32 H 1.08999 * 109.73988 * 315.39453 * 21 20 19 33 33 H 1.09000 * 109.74304 * 76.06245 * 21 20 19 34 34 H 1.09003 * 115.54578 * 150.71052 * 22 9 7 35 35 H 1.09006 * 117.49828 * 0.02562 * 23 22 9 36 36 H 1.09001 * 117.50072 * 145.02161 * 23 22 9 37 37 H 1.09000 * 117.50086 * 214.97919 * 24 22 9 38 38 H 1.08997 * 117.49799 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4958 2.0462 -1.4001 5 1 1.4457 2.6526 0.6999 6 1 3.5457 1.4400 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0449 -1.2287 0.3039 9 7 1.3788 -2.3588 -0.3840 10 6 0.5734 -2.3597 -1.4647 11 8 0.4063 -1.3383 -2.0972 12 6 -0.1186 -3.6297 -1.8877 13 1 -0.7625 -3.9794 -1.0806 14 6 -0.9634 -3.3601 -3.1359 15 6 -1.8565 -4.5713 -3.4272 16 7 -1.0253 -5.7774 -3.4312 17 6 -1.3107 -6.9874 -3.9418 18 7 -0.2902 -7.7783 -3.7335 19 6 0.6728 -7.1004 -3.0853 20 6 0.2323 -5.8519 -2.8880 21 6 0.9315 -4.7027 -2.2085 22 6 1.5811 -3.5925 0.3798 23 6 2.4114 -3.5017 1.6616 24 6 2.9950 -4.1757 0.4182 25 1 -0.4850 0.8368 0.0740 26 1 -1.5868 -2.4817 -2.9691 27 1 -0.3062 -3.1820 -3.9870 28 1 -2.6207 -4.6565 -2.6545 29 1 -2.3302 -4.4506 -4.4014 30 1 -2.2289 -7.2607 -4.4406 31 1 1.6309 -7.4931 -2.7784 32 1 1.3972 -5.0488 -1.2858 33 1 1.6914 -4.2898 -2.8720 34 1 0.7472 -4.2944 0.3685 35 1 2.8069 -2.5239 1.9369 36 1 2.1239 -4.1439 2.4941 37 1 3.0915 -5.2614 0.4327 38 1 3.7746 -3.6418 -0.1251 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000329472973.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:49 Heat of formation + Delta-G solvation = 47.918137 kcal Electronic energy + Delta-G solvation = -22010.956585 eV Core-core repulsion = 18855.020360 eV Total energy + Delta-G solvation = -3155.936226 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.22435 -40.68950 -38.02003 -37.00629 -34.77952 -34.00189 -32.68383 -31.35071 -29.12101 -26.93988 -25.49981 -23.80671 -23.06594 -22.67870 -22.32384 -21.00063 -19.92660 -18.35356 -17.99337 -17.87879 -16.72416 -16.59832 -16.12804 -15.74079 -15.37880 -14.89886 -14.88272 -14.63022 -14.60424 -14.24888 -14.01899 -13.62372 -13.13680 -12.96461 -12.83600 -12.68579 -12.50730 -12.22007 -12.11970 -12.06544 -11.94184 -11.49208 -11.20861 -10.93393 -10.71253 -10.39605 -9.91253 -9.23702 -8.96711 -8.20836 -5.97074 1.18416 1.35798 1.43820 1.48231 1.94252 2.23593 2.24408 2.38694 3.00304 3.12296 3.32495 3.57064 3.68250 3.75394 3.87896 4.01065 4.09658 4.18115 4.25980 4.29669 4.33256 4.46159 4.53982 4.63935 4.76947 4.80212 4.90271 4.92887 5.05189 5.11041 5.20015 5.30484 5.48136 5.49199 5.51306 5.82800 6.20203 6.38731 7.03672 7.15936 7.19682 7.71061 8.36007 8.87899 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.025158 B = 0.005971 C = 0.005102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.694099 B = 4688.484827 C = 5486.933090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.023 3.977 3 Si 0.967 3.033 4 H -0.292 1.292 5 H -0.282 1.282 6 H -0.255 1.255 7 C -0.355 4.355 8 H 0.078 0.922 9 N -0.440 5.440 10 C 0.474 3.526 11 O -0.585 6.585 12 C -0.092 4.092 13 H 0.087 0.913 14 C -0.106 4.106 15 C 0.112 3.888 16 N -0.457 5.457 17 C 0.185 3.815 18 N -0.533 5.533 19 C -0.040 4.040 20 C -0.025 4.025 21 C -0.027 4.027 22 C 0.048 3.952 23 C -0.175 4.175 24 C -0.178 4.178 25 H 0.259 0.741 26 H 0.078 0.922 27 H 0.059 0.941 28 H 0.102 0.898 29 H 0.123 0.877 30 H 0.240 0.760 31 H 0.180 0.820 32 H 0.109 0.891 33 H 0.067 0.933 34 H 0.122 0.878 35 H 0.081 0.919 36 H 0.115 0.885 37 H 0.126 0.874 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.265 -11.888 -2.618 12.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.183 4.183 3 Si 0.792 3.208 4 H -0.219 1.219 5 H -0.208 1.208 6 H -0.179 1.179 7 C -0.483 4.483 8 H 0.096 0.904 9 N -0.159 5.159 10 C 0.263 3.737 11 O -0.466 6.466 12 C -0.114 4.114 13 H 0.105 0.895 14 C -0.144 4.144 15 C -0.009 4.009 16 N -0.141 5.141 17 C -0.097 4.097 18 N -0.252 5.252 19 C -0.186 4.186 20 C -0.140 4.140 21 C -0.066 4.066 22 C -0.057 4.057 23 C -0.213 4.213 24 C -0.216 4.216 25 H 0.068 0.932 26 H 0.096 0.904 27 H 0.078 0.922 28 H 0.120 0.880 29 H 0.141 0.859 30 H 0.256 0.744 31 H 0.197 0.803 32 H 0.127 0.873 33 H 0.086 0.914 34 H 0.139 0.861 35 H 0.099 0.901 36 H 0.133 0.867 37 H 0.144 0.856 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.574 -11.938 -3.232 12.633 hybrid contribution 0.239 2.194 0.370 2.238 sum -2.335 -9.744 -2.862 10.420 Atomic orbital electron populations 1.69928 1.07910 1.27530 1.45183 1.25977 0.95484 1.02400 0.94431 0.85359 0.79099 0.78851 0.77454 1.21896 1.20751 1.17894 1.19111 0.95104 0.85311 1.48766 0.90405 1.42977 1.43282 1.07208 1.22462 1.20441 0.82842 0.89523 0.80907 1.90489 1.64298 1.36102 1.55715 1.21192 0.97589 0.93829 0.98774 0.89528 1.21518 0.98440 0.97599 0.96823 1.22160 0.92583 0.80468 1.05672 1.45641 1.13959 1.11797 1.42680 1.25477 1.01445 0.80423 1.02319 1.70467 1.02082 1.33258 1.19440 1.22064 1.00778 0.90732 1.05050 1.21207 0.88343 0.98228 1.06239 1.20246 0.95572 0.89869 1.00876 1.21977 0.94982 0.90177 0.98604 1.23163 1.03876 1.02281 0.91977 1.23369 0.96258 1.00868 1.01147 0.93200 0.90382 0.92246 0.87958 0.85872 0.74351 0.80258 0.87308 0.91416 0.86071 0.90087 0.86663 0.85606 0.90444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -51.76 11.67 21.66 0.25 -51.51 16 2 C 0.02 1.31 4.36 84.93 0.37 1.68 16 3 Si 0.97 45.14 29.60 68.60 2.03 47.17 16 4 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 7 C -0.36 -19.08 7.92 84.04 0.67 -18.41 16 8 H 0.08 4.06 7.28 -2.91 -0.02 4.04 16 9 N -0.44 -21.07 2.85 -613.13 -1.75 -22.81 16 10 C 0.47 23.02 6.35 87.65 0.56 23.58 16 11 O -0.58 -33.98 13.48 -3.08 -0.04 -34.03 16 12 C -0.09 -3.27 1.76 -11.33 -0.02 -3.29 16 13 H 0.09 2.97 7.55 -2.38 -0.02 2.96 16 14 C -0.11 -3.32 4.66 30.73 0.14 -3.18 16 15 C 0.11 2.40 7.00 86.48 0.61 3.00 16 16 N -0.46 -11.26 3.13 -514.84 -1.61 -12.87 16 17 C 0.19 4.22 12.66 180.38 2.28 6.51 16 18 N -0.53 -15.23 11.27 -200.98 -2.26 -17.50 16 19 C -0.04 -1.11 11.84 83.30 0.99 -0.12 16 20 C -0.03 -0.71 6.57 40.73 0.27 -0.44 16 21 C -0.03 -0.83 5.08 30.03 0.15 -0.68 16 22 C 0.05 1.73 4.31 44.99 0.19 1.92 16 23 C -0.18 -5.75 9.80 30.59 0.30 -5.45 16 24 C -0.18 -5.26 9.49 30.59 0.29 -4.97 16 25 H 0.26 14.88 8.32 -92.71 -0.77 14.11 16 26 H 0.08 2.76 7.77 -2.39 -0.02 2.75 16 27 H 0.06 2.02 8.11 -2.39 -0.02 2.00 16 28 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 29 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.24 3.17 8.06 -2.91 -0.02 3.15 16 31 H 0.18 4.25 8.06 -2.91 -0.02 4.23 16 32 H 0.11 3.04 4.79 -2.39 -0.01 3.03 16 33 H 0.07 2.25 8.11 -2.39 -0.02 2.23 16 34 H 0.12 3.92 6.28 -2.39 -0.01 3.91 16 35 H 0.08 3.11 6.74 -2.38 -0.02 3.09 16 36 H 0.12 3.03 8.14 -2.39 -0.02 3.02 16 37 H 0.13 2.77 8.14 -2.39 -0.02 2.75 16 38 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -74.22 306.89 4.48 -69.74 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 1.07 Total: 21.66 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: 6.80 Total: 0.14 kcal Atomic # 7 Polarization: -99.32 SS G_CDS: -5.37 Total: -104.69 kcal Atomic # 8 Polarization: -33.98 SS G_CDS: -0.04 Total: -34.03 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -74.22 4.48 -69.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329472973.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.659 kcal (2) G-P(sol) polarization free energy of solvation -74.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds