Wall clock time and date at job start Mon Mar 30 2020 01:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86798 * 119.99877 * 2 1 4 4 H 1.48503 * 109.47039 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47081 * 299.99713 * 3 2 1 6 6 H 1.48500 * 109.47383 * 59.99741 * 3 2 1 7 7 C 1.38951 * 119.99958 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99487 * 160.58875 * 7 2 1 9 9 N 1.37101 * 120.00113 * 340.58318 * 7 2 1 10 10 C 1.34765 * 119.99916 * 317.29843 * 9 7 2 11 11 O 1.21290 * 120.00429 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99879 * 180.02562 * 10 9 7 13 13 H 1.09003 * 109.49541 * 299.99416 * 12 10 9 14 14 C 1.53120 * 109.49646 * 179.97438 * 12 10 9 15 15 C 1.53281 * 109.70926 * 170.14284 * 14 12 10 16 16 N 1.46466 * 108.70138 * 50.73537 * 15 14 12 17 17 C 1.34409 * 128.44625 * 162.74426 * 16 15 14 18 18 N 1.30787 * 108.55377 * 180.10370 * 17 16 15 19 19 C 1.34424 * 109.32487 * 359.95917 * 18 17 16 20 20 C 1.33861 * 107.79328 * 359.97438 * 19 18 17 21 21 C 1.50729 * 128.66634 * 180.20299 * 20 19 18 22 22 C 1.46501 * 119.99401 * 137.29578 * 9 7 2 23 23 C 1.52994 * 117.50411 * 354.45090 * 22 9 7 24 24 C 1.52993 * 117.50283 * 63.11692 * 22 9 7 25 25 H 0.96996 * 120.00079 * 355.11132 * 1 2 3 26 26 H 1.08999 * 109.42692 * 290.21328 * 14 12 10 27 27 H 1.08999 * 109.43284 * 50.11940 * 14 12 10 28 28 H 1.09004 * 109.59687 * 170.49609 * 15 14 12 29 29 H 1.09004 * 109.59919 * 290.96700 * 15 14 12 30 30 H 1.07997 * 125.72200 * 0.10616 * 17 16 15 31 31 H 1.07999 * 126.10636 * 179.97438 * 19 18 17 32 32 H 1.08999 * 109.77711 * 44.49298 * 21 20 19 33 33 H 1.08998 * 109.72162 * 283.76099 * 21 20 19 34 34 H 1.09008 * 115.54315 * 208.78094 * 22 9 7 35 35 H 1.08998 * 117.49956 * 215.00306 * 23 22 9 36 36 H 1.08997 * 117.49822 * 0.02571 * 23 22 9 37 37 H 1.09008 * 117.50086 * 359.96817 * 24 22 9 38 38 H 1.09002 * 117.50173 * 144.96822 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3964 -1.2126 6 1 1.8893 2.3965 1.2124 7 6 2.0089 -1.2034 0.0005 8 1 3.0428 -1.2300 -0.3103 9 7 1.3819 -2.3568 0.3958 10 6 0.5799 -2.3506 1.4788 11 8 0.4132 -1.3249 2.1042 12 6 -0.1089 -3.6186 1.9136 13 1 -0.7539 -3.9759 1.1108 14 6 -0.9529 -3.3400 3.1604 15 6 -1.8429 -4.5506 3.4633 16 7 -1.0094 -5.7549 3.4760 17 6 -1.2924 -6.9617 3.9955 18 7 -0.2709 -7.7526 3.7916 19 6 0.6905 -7.0779 3.1378 20 6 0.2475 -5.8316 2.9316 21 6 0.9432 -4.6873 2.2399 22 6 1.5837 -3.5958 -0.3594 23 6 2.3990 -3.5110 -1.6512 24 6 3.0006 -4.1708 -0.4079 25 1 -0.4850 0.8369 0.0716 26 1 -0.2950 -3.1522 4.0090 27 1 -1.5790 -2.4650 2.9864 28 1 -2.3152 -4.4226 4.4373 29 1 -2.6082 -4.6437 2.6926 30 1 -2.2096 -7.2329 4.4972 31 1 1.6492 -7.4710 2.8332 32 1 1.4081 -5.0404 1.3195 33 1 1.7026 -4.2662 2.8988 34 1 0.7543 -4.3027 -0.3331 35 1 2.1062 -4.1621 -2.4748 36 1 2.7857 -2.5335 -1.9391 37 1 3.7830 -3.6269 0.1217 38 1 3.1036 -5.2559 -0.4131 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000329472975.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:52 Heat of formation + Delta-G solvation = 66.364066 kcal Electronic energy + Delta-G solvation = -22010.988079 eV Core-core repulsion = 18855.851728 eV Total energy + Delta-G solvation = -3155.136350 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.13794 -39.04078 -36.55267 -35.55467 -33.05062 -32.62551 -30.86474 -30.17509 -27.86143 -25.14248 -24.26585 -22.39919 -21.73715 -21.28276 -21.11843 -19.42315 -18.62619 -16.96409 -16.66272 -16.16860 -15.45217 -14.84546 -14.59337 -14.14173 -13.96652 -13.77813 -13.62628 -13.37821 -13.10006 -12.91634 -12.62797 -12.06273 -11.66106 -11.50803 -11.01272 -10.96585 -10.90635 -10.82727 -10.73581 -10.46814 -10.18556 -9.96776 -9.84141 -9.73723 -9.34699 -8.76383 -8.15149 -8.05598 -7.12555 -6.15829 -3.93545 2.24893 2.96185 3.27542 3.31944 3.36941 3.38288 3.99664 4.20380 4.56333 4.68798 4.72504 4.80200 4.87819 5.01072 5.15520 5.21613 5.38181 5.47777 5.50180 5.55004 5.66501 5.70707 5.77069 5.93778 6.01657 6.09033 6.11180 6.18981 6.35866 6.44073 6.51595 6.60627 6.69930 6.88740 6.92933 7.38467 7.56866 8.19803 8.21659 8.99226 9.07736 9.59480 10.19809 10.91113 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.025101 B = 0.005975 C = 0.005105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.231713 B = 4684.913685 C = 5483.537266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.073 3.927 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.281 1.281 7 C -0.345 4.345 8 H 0.079 0.921 9 N -0.424 5.424 10 C 0.489 3.511 11 O -0.531 6.531 12 C -0.104 4.104 13 H 0.081 0.919 14 C -0.110 4.110 15 C 0.103 3.897 16 N -0.454 5.454 17 C 0.171 3.829 18 N -0.501 5.501 19 C -0.035 4.035 20 C -0.007 4.007 21 C -0.043 4.043 22 C 0.073 3.927 23 C -0.176 4.176 24 C -0.207 4.207 25 H 0.263 0.737 26 H 0.074 0.926 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.200 0.800 31 H 0.167 0.833 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.084 0.916 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.035 -9.680 2.943 10.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.137 4.137 3 Si 0.733 3.267 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.207 1.207 7 C -0.471 4.471 8 H 0.097 0.903 9 N -0.145 5.145 10 C 0.276 3.724 11 O -0.409 6.409 12 C -0.127 4.127 13 H 0.099 0.901 14 C -0.148 4.148 15 C -0.019 4.019 16 N -0.137 5.137 17 C -0.111 4.111 18 N -0.219 5.219 19 C -0.182 4.182 20 C -0.122 4.122 21 C -0.081 4.081 22 C -0.033 4.033 23 C -0.214 4.214 24 C -0.246 4.246 25 H 0.073 0.927 26 H 0.093 0.907 27 H 0.116 0.884 28 H 0.108 0.892 29 H 0.102 0.898 30 H 0.217 0.783 31 H 0.184 0.816 32 H 0.118 0.882 33 H 0.102 0.898 34 H 0.121 0.879 35 H 0.102 0.898 36 H 0.125 0.875 37 H 0.111 0.889 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.371 -9.705 3.471 10.576 hybrid contribution 0.114 1.553 -0.325 1.590 sum -2.258 -8.152 3.146 9.025 Atomic orbital electron populations 1.69887 1.06538 1.27659 1.42491 1.25154 0.94728 0.99314 0.94494 0.86252 0.79964 0.83003 0.77470 1.19557 1.21250 1.20671 1.18926 0.94728 0.84490 1.48992 0.90329 1.42759 1.43755 1.06123 1.21821 1.19477 0.83195 0.88282 0.81465 1.90529 1.62412 1.33380 1.54577 1.21315 0.97249 0.96235 0.97863 0.90087 1.21630 0.98634 0.96140 0.98370 1.22125 0.93625 0.83048 1.03129 1.45510 1.14252 1.11328 1.42655 1.24674 1.00943 0.81426 1.04014 1.70438 1.01120 1.32198 1.18177 1.21771 1.00201 0.90894 1.05364 1.21367 0.87374 0.98602 1.04866 1.20463 0.96614 0.90484 1.00542 1.21745 0.92806 0.91261 0.97482 1.23121 1.04509 1.02671 0.91055 1.23371 0.98949 0.99029 1.03223 0.92656 0.90716 0.88437 0.89171 0.89789 0.78307 0.81572 0.88218 0.89848 0.87910 0.89786 0.87479 0.88916 0.89576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.89 11.68 55.50 0.65 -23.24 16 2 C 0.07 2.00 4.34 -17.47 -0.08 1.93 16 3 Si 0.91 21.38 29.60 -169.99 -5.03 16.34 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.34 -9.04 7.91 -14.93 -0.12 -9.16 16 8 H 0.08 2.01 7.29 -52.49 -0.38 1.63 16 9 N -0.42 -10.00 2.85 -107.73 -0.31 -10.30 16 10 C 0.49 11.51 6.35 -10.99 -0.07 11.44 16 11 O -0.53 -14.68 13.47 5.55 0.07 -14.61 16 12 C -0.10 -1.86 1.75 -91.46 -0.16 -2.02 16 13 H 0.08 1.42 7.54 -51.93 -0.39 1.03 16 14 C -0.11 -1.73 4.66 -26.52 -0.12 -1.85 16 15 C 0.10 1.23 7.00 -3.92 -0.03 1.20 16 16 N -0.45 -6.23 3.13 -114.08 -0.36 -6.59 16 17 C 0.17 2.26 12.66 -90.71 -1.15 1.11 16 18 N -0.50 -7.83 11.27 -14.87 -0.17 -8.00 16 19 C -0.04 -0.53 11.84 -17.95 -0.21 -0.75 16 20 C -0.01 -0.11 6.57 -81.72 -0.54 -0.64 16 21 C -0.04 -0.67 5.08 -27.62 -0.14 -0.81 16 22 C 0.07 1.37 4.32 -67.94 -0.29 1.08 16 23 C -0.18 -3.03 9.80 -26.70 -0.26 -3.29 16 24 C -0.21 -3.30 9.53 -26.70 -0.25 -3.55 16 25 H 0.26 7.29 8.32 -40.82 -0.34 6.95 16 26 H 0.07 1.24 8.11 -51.93 -0.42 0.82 16 27 H 0.10 1.67 7.77 -51.93 -0.40 1.26 16 28 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.20 1.81 8.06 -52.49 -0.42 1.39 16 31 H 0.17 2.15 8.06 -52.49 -0.42 1.72 16 32 H 0.10 1.48 4.82 -51.93 -0.25 1.23 16 33 H 0.08 1.38 8.11 -51.93 -0.42 0.96 16 34 H 0.10 1.76 6.25 -51.92 -0.32 1.44 16 35 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.11 2.06 6.75 -51.93 -0.35 1.71 16 37 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 38 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 306.93 15.07 4.63 4.63 Total: -1.00 -32.75 306.93 -8.98 -41.72 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -5.04 Total: 5.35 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -3.42 Total: -5.31 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: -0.18 Total: -48.13 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: 0.07 Total: -14.61 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.75 -8.98 -41.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329472975.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.087 kcal (2) G-P(sol) polarization free energy of solvation -32.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds