Wall clock time and date at job start Mon Mar 30 2020 01:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86798 * 119.99877 * 2 1 4 4 H 1.48503 * 109.47039 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47081 * 299.99713 * 3 2 1 6 6 H 1.48500 * 109.47383 * 59.99741 * 3 2 1 7 7 C 1.38951 * 119.99958 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99487 * 160.58875 * 7 2 1 9 9 N 1.37101 * 120.00113 * 340.58318 * 7 2 1 10 10 C 1.34765 * 119.99916 * 317.29843 * 9 7 2 11 11 O 1.21290 * 120.00429 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99879 * 180.02562 * 10 9 7 13 13 H 1.09003 * 109.49541 * 299.99416 * 12 10 9 14 14 C 1.53120 * 109.49646 * 179.97438 * 12 10 9 15 15 C 1.53281 * 109.70926 * 170.14284 * 14 12 10 16 16 N 1.46466 * 108.70138 * 50.73537 * 15 14 12 17 17 C 1.34409 * 128.44625 * 162.74426 * 16 15 14 18 18 N 1.30787 * 108.55377 * 180.10370 * 17 16 15 19 19 C 1.34424 * 109.32487 * 359.95917 * 18 17 16 20 20 C 1.33861 * 107.79328 * 359.97438 * 19 18 17 21 21 C 1.50729 * 128.66634 * 180.20299 * 20 19 18 22 22 C 1.46501 * 119.99401 * 137.29578 * 9 7 2 23 23 C 1.52994 * 117.50411 * 354.45090 * 22 9 7 24 24 C 1.52993 * 117.50283 * 63.11692 * 22 9 7 25 25 H 0.96996 * 120.00079 * 355.11132 * 1 2 3 26 26 H 1.08999 * 109.42692 * 290.21328 * 14 12 10 27 27 H 1.08999 * 109.43284 * 50.11940 * 14 12 10 28 28 H 1.09004 * 109.59687 * 170.49609 * 15 14 12 29 29 H 1.09004 * 109.59919 * 290.96700 * 15 14 12 30 30 H 1.07997 * 125.72200 * 0.10616 * 17 16 15 31 31 H 1.07999 * 126.10636 * 179.97438 * 19 18 17 32 32 H 1.08999 * 109.77711 * 44.49298 * 21 20 19 33 33 H 1.08998 * 109.72162 * 283.76099 * 21 20 19 34 34 H 1.09008 * 115.54315 * 208.78094 * 22 9 7 35 35 H 1.08998 * 117.49956 * 215.00306 * 23 22 9 36 36 H 1.08997 * 117.49822 * 0.02571 * 23 22 9 37 37 H 1.09008 * 117.50086 * 359.96817 * 24 22 9 38 38 H 1.09002 * 117.50173 * 144.96822 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3964 -1.2126 6 1 1.8893 2.3965 1.2124 7 6 2.0089 -1.2034 0.0005 8 1 3.0428 -1.2300 -0.3103 9 7 1.3819 -2.3568 0.3958 10 6 0.5799 -2.3506 1.4788 11 8 0.4132 -1.3249 2.1042 12 6 -0.1089 -3.6186 1.9136 13 1 -0.7539 -3.9759 1.1108 14 6 -0.9529 -3.3400 3.1604 15 6 -1.8429 -4.5506 3.4633 16 7 -1.0094 -5.7549 3.4760 17 6 -1.2924 -6.9617 3.9955 18 7 -0.2709 -7.7526 3.7916 19 6 0.6905 -7.0779 3.1378 20 6 0.2475 -5.8316 2.9316 21 6 0.9432 -4.6873 2.2399 22 6 1.5837 -3.5958 -0.3594 23 6 2.3990 -3.5110 -1.6512 24 6 3.0006 -4.1708 -0.4079 25 1 -0.4850 0.8369 0.0716 26 1 -0.2950 -3.1522 4.0090 27 1 -1.5790 -2.4650 2.9864 28 1 -2.3152 -4.4226 4.4373 29 1 -2.6082 -4.6437 2.6926 30 1 -2.2096 -7.2329 4.4972 31 1 1.6492 -7.4710 2.8332 32 1 1.4081 -5.0404 1.3195 33 1 1.7026 -4.2662 2.8988 34 1 0.7543 -4.3027 -0.3331 35 1 2.1062 -4.1621 -2.4748 36 1 2.7857 -2.5335 -1.9391 37 1 3.7830 -3.6269 0.1217 38 1 3.1036 -5.2559 -0.4131 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000329472975.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:52 Heat of formation + Delta-G solvation = 47.384805 kcal Electronic energy + Delta-G solvation = -22011.811081 eV Core-core repulsion = 18855.851728 eV Total energy + Delta-G solvation = -3155.959353 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.22323 -40.70264 -38.02571 -37.01339 -34.77963 -34.00732 -32.68620 -31.35068 -29.12243 -26.94415 -25.50169 -23.80870 -23.07019 -22.68506 -22.32423 -21.00449 -19.92611 -18.35158 -17.99539 -17.88468 -16.72901 -16.60195 -16.13121 -15.74143 -15.38392 -14.90464 -14.88362 -14.63190 -14.61048 -14.25341 -14.01713 -13.62920 -13.18707 -12.95036 -12.79959 -12.67676 -12.51576 -12.22859 -12.12836 -12.06310 -11.94267 -11.51896 -11.21064 -10.93543 -10.69782 -10.39544 -9.91467 -9.23579 -9.01369 -8.18904 -5.99028 1.18449 1.36260 1.42430 1.50283 1.94296 2.24308 2.24928 2.37796 2.98980 3.11536 3.33359 3.56795 3.68198 3.75187 3.87838 4.01025 4.09395 4.17842 4.25947 4.29222 4.33001 4.45780 4.54021 4.63548 4.76905 4.80199 4.90137 4.92819 5.04950 5.10853 5.19850 5.30100 5.47822 5.49206 5.50914 5.82903 6.19483 6.38778 7.03186 7.16034 7.18733 7.70125 8.34317 8.86399 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.025101 B = 0.005975 C = 0.005105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.231713 B = 4684.913685 C = 5483.537266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.023 3.977 3 Si 0.961 3.039 4 H -0.259 1.259 5 H -0.277 1.277 6 H -0.294 1.294 7 C -0.350 4.350 8 H 0.078 0.922 9 N -0.440 5.440 10 C 0.475 3.525 11 O -0.584 6.584 12 C -0.092 4.092 13 H 0.087 0.913 14 C -0.106 4.106 15 C 0.112 3.888 16 N -0.457 5.457 17 C 0.185 3.815 18 N -0.533 5.533 19 C -0.040 4.040 20 C -0.025 4.025 21 C -0.027 4.027 22 C 0.047 3.953 23 C -0.176 4.176 24 C -0.177 4.177 25 H 0.258 0.742 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.123 0.877 29 H 0.102 0.898 30 H 0.240 0.760 31 H 0.180 0.820 32 H 0.109 0.891 33 H 0.068 0.932 34 H 0.123 0.877 35 H 0.115 0.885 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.246 -12.004 2.984 12.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.183 4.183 3 Si 0.786 3.214 4 H -0.183 1.183 5 H -0.202 1.202 6 H -0.221 1.221 7 C -0.478 4.478 8 H 0.096 0.904 9 N -0.160 5.160 10 C 0.264 3.736 11 O -0.466 6.466 12 C -0.114 4.114 13 H 0.105 0.895 14 C -0.144 4.144 15 C -0.009 4.009 16 N -0.141 5.141 17 C -0.097 4.097 18 N -0.253 5.253 19 C -0.186 4.186 20 C -0.140 4.140 21 C -0.066 4.066 22 C -0.058 4.058 23 C -0.214 4.214 24 C -0.216 4.216 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.096 0.904 28 H 0.141 0.859 29 H 0.120 0.880 30 H 0.256 0.744 31 H 0.197 0.803 32 H 0.127 0.873 33 H 0.086 0.914 34 H 0.140 0.860 35 H 0.133 0.867 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.547 -12.056 3.476 12.803 hybrid contribution 0.217 2.207 -0.327 2.242 sum -2.330 -9.849 3.149 10.599 Atomic orbital electron populations 1.69980 1.07814 1.27759 1.44899 1.25919 0.95389 1.02285 0.94681 0.85403 0.79445 0.79557 0.76975 1.18293 1.20248 1.22120 1.19142 0.94892 0.85887 1.47844 0.90399 1.42985 1.43501 1.07045 1.22453 1.20448 0.82717 0.89552 0.80857 1.90484 1.64146 1.35768 1.56152 1.21191 0.97618 0.93851 0.98762 0.89527 1.21521 0.98461 0.97584 0.96816 1.22160 0.92553 0.80534 1.05650 1.45638 1.13975 1.11983 1.42474 1.25478 1.01435 0.80511 1.02246 1.70467 1.02097 1.33197 1.19490 1.22067 1.00787 0.90822 1.04951 1.21210 0.88365 0.98285 1.06157 1.20242 0.95590 0.89970 1.00750 1.21994 0.95137 0.90039 0.98610 1.23176 1.03970 1.02330 0.91907 1.23380 0.96072 1.00974 1.01164 0.93319 0.92194 0.90364 0.85870 0.87964 0.74361 0.80257 0.87294 0.91388 0.86003 0.86660 0.90116 0.90428 0.85579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -51.71 11.68 21.66 0.25 -51.46 16 2 C 0.02 1.30 4.34 84.93 0.37 1.67 16 3 Si 0.96 45.09 29.60 68.60 2.03 47.12 16 4 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.29 -14.35 7.11 99.48 0.71 -13.65 16 7 C -0.35 -18.77 7.91 84.04 0.66 -18.10 16 8 H 0.08 4.06 7.29 -2.91 -0.02 4.04 16 9 N -0.44 -21.02 2.85 -613.15 -1.75 -22.77 16 10 C 0.48 22.95 6.35 87.66 0.56 23.51 16 11 O -0.58 -33.70 13.47 -3.06 -0.04 -33.74 16 12 C -0.09 -3.26 1.75 -11.34 -0.02 -3.28 16 13 H 0.09 2.95 7.54 -2.39 -0.02 2.94 16 14 C -0.11 -3.30 4.66 30.73 0.14 -3.15 16 15 C 0.11 2.38 7.00 86.48 0.61 2.98 16 16 N -0.46 -11.19 3.13 -514.84 -1.61 -12.80 16 17 C 0.19 4.20 12.66 180.38 2.28 6.49 16 18 N -0.53 -15.18 11.27 -200.97 -2.26 -17.45 16 19 C -0.04 -1.10 11.84 83.30 0.99 -0.12 16 20 C -0.03 -0.71 6.57 40.73 0.27 -0.44 16 21 C -0.03 -0.82 5.08 30.02 0.15 -0.67 16 22 C 0.05 1.71 4.32 44.99 0.19 1.90 16 23 C -0.18 -5.78 9.80 30.62 0.30 -5.48 16 24 C -0.18 -5.23 9.53 30.62 0.29 -4.94 16 25 H 0.26 14.89 8.32 -92.71 -0.77 14.12 16 26 H 0.06 2.02 8.11 -2.39 -0.02 2.00 16 27 H 0.08 2.75 7.77 -2.39 -0.02 2.73 16 28 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16 30 H 0.24 3.15 8.06 -2.91 -0.02 3.13 16 31 H 0.18 4.23 8.06 -2.91 -0.02 4.21 16 32 H 0.11 3.02 4.82 -2.39 -0.01 3.01 16 33 H 0.07 2.25 8.11 -2.39 -0.02 2.23 16 34 H 0.12 3.92 6.25 -2.38 -0.01 3.91 16 35 H 0.12 3.04 8.14 -2.39 -0.02 3.02 16 36 H 0.08 3.09 6.75 -2.39 -0.02 3.08 16 37 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 38 H 0.13 2.76 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -73.98 306.93 4.48 -69.50 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: 1.07 Total: 21.22 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 6.80 Total: 0.37 kcal Atomic # 7 Polarization: -99.10 SS G_CDS: -5.37 Total: -104.47 kcal Atomic # 8 Polarization: -33.70 SS G_CDS: -0.04 Total: -33.74 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -73.98 4.48 -69.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329472975.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.881 kcal (2) G-P(sol) polarization free energy of solvation -73.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds