Wall clock time and date at job start Mon Mar 30 2020 01:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86802 * 119.99750 * 2 1 4 4 H 1.48498 * 109.46888 * 269.99484 * 3 2 1 5 5 H 1.48500 * 109.47241 * 29.99491 * 3 2 1 6 6 H 1.48501 * 109.47014 * 149.99714 * 3 2 1 7 7 C 1.38955 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99624 * 180.02562 * 7 2 1 9 9 N 1.37093 * 119.99886 * 0.02562 * 7 2 1 10 10 C 1.34778 * 119.99879 * 179.97438 * 9 7 2 11 11 O 1.21289 * 119.99863 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00032 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.46954 * 179.97438 * 12 10 9 14 14 C 1.48558 * 111.00499 * 285.42153 * 13 12 10 15 15 C 1.54379 * 104.59447 * 200.96130 * 14 13 12 16 16 C 1.54251 * 105.06464 * 23.85268 * 15 14 13 17 17 C 1.48566 * 110.99819 * 169.99801 * 13 12 10 18 18 H 1.08995 * 110.50918 * 40.21948 * 17 13 12 19 19 C 1.50692 * 110.41553 * 277.82053 * 17 13 12 20 20 C 1.38678 * 120.41979 * 143.34813 * 19 17 13 21 21 C 1.38628 * 118.42181 * 180.02562 * 20 19 17 22 22 C 1.38230 * 119.15851 * 359.97438 * 21 20 19 23 23 N 1.31854 * 120.76583 * 0.02562 * 22 21 20 24 24 C 1.31878 * 121.72440 * 0.02562 * 23 22 21 25 25 H 0.97001 * 120.00496 * 0.02562 * 1 2 3 26 26 H 0.97002 * 120.00223 * 359.97438 * 9 7 2 27 27 H 1.09001 * 109.47117 * 60.00643 * 12 10 9 28 28 H 1.08998 * 109.47318 * 300.00269 * 12 10 9 29 29 H 1.08992 * 110.41247 * 82.17710 * 14 13 12 30 30 H 1.09006 * 110.50670 * 319.78856 * 14 13 12 31 31 H 1.08997 * 110.32212 * 264.95148 * 15 14 13 32 32 H 1.09002 * 110.40762 * 142.79128 * 15 14 13 33 33 H 1.09003 * 110.32835 * 241.10802 * 16 15 14 34 34 H 1.09000 * 110.33129 * 118.89380 * 16 15 14 35 35 H 1.08001 * 120.78723 * 0.04921 * 20 19 17 36 36 H 1.07992 * 120.41719 * 180.02562 * 21 20 19 37 37 H 1.08001 * 119.61116 * 180.30080 * 22 21 20 38 38 H 1.08001 * 119.61470 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4454 2.6527 0.6999 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2439 -4.8629 0.0011 13 7 2.1985 -5.9794 0.0004 14 6 2.8238 -6.1445 -1.3370 15 6 3.3416 -7.5989 -1.3476 16 6 2.4750 -8.3404 -0.3090 17 6 1.5065 -7.2717 0.2418 18 1 0.5591 -7.3040 -0.2962 19 6 1.2793 -7.4788 1.7171 20 6 0.1188 -8.0880 2.1701 21 6 -0.0477 -8.2571 3.5359 22 6 0.9418 -7.8165 4.3947 23 7 2.0327 -7.2413 3.9282 24 6 2.2242 -7.0631 2.6356 25 1 -0.4851 0.8400 -0.0004 26 1 0.3534 -2.3907 0.0005 27 1 0.6169 -4.9209 -0.8887 28 1 0.6175 -4.9205 0.8913 29 1 3.6512 -5.4455 -1.4587 30 1 2.0847 -5.9984 -2.1248 31 1 4.3913 -7.6291 -1.0557 32 1 3.2110 -8.0417 -2.3350 33 1 3.0994 -8.7347 0.4928 34 1 1.9177 -9.1461 -0.7869 35 1 -0.6371 -8.4230 1.4753 36 1 -0.9388 -8.7279 3.9239 37 1 0.8218 -7.9490 5.4598 38 1 3.1305 -6.5875 2.2910 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330698869.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:23 Heat of formation + Delta-G solvation = 6.999571 kcal Electronic energy + Delta-G solvation = -21024.132028 eV Core-core repulsion = 17866.421440 eV Total energy + Delta-G solvation = -3157.710588 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.38098 -38.84645 -37.48683 -33.91069 -32.78053 -32.00103 -31.56894 -31.10613 -27.83017 -26.70452 -24.27652 -23.55737 -23.05069 -20.94004 -20.28773 -19.13750 -17.84596 -17.11717 -16.38158 -16.11641 -15.49458 -15.34833 -14.52924 -14.44810 -14.20766 -13.80261 -13.75254 -13.44736 -13.02228 -12.96233 -12.69721 -12.24832 -12.03033 -11.93336 -11.47682 -11.25015 -11.14893 -10.96676 -10.88646 -10.48903 -10.36761 -10.18999 -9.74568 -9.46384 -9.35896 -8.86164 -8.52445 -8.03183 -7.92251 -6.38734 -3.79314 1.18236 1.33873 3.19872 3.28294 3.34586 3.83708 3.93358 4.00443 4.24597 4.48062 4.71276 4.77446 4.83703 4.97656 5.04127 5.09491 5.14368 5.23332 5.28843 5.36934 5.57835 5.62341 5.71863 5.76782 5.83348 5.90516 5.93442 6.03970 6.14021 6.20972 6.28370 6.35413 6.42261 6.80916 7.10038 7.19595 7.58033 8.09200 8.11383 8.65065 9.21385 9.57775 10.09802 10.79236 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.019566 B = 0.004647 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.706954 B = 6024.481690 C = 6848.474161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.297 4.297 8 H 0.103 0.897 9 N -0.566 5.566 10 C 0.447 3.553 11 O -0.575 6.575 12 C 0.035 3.965 13 N -0.477 5.477 14 C 0.038 3.962 15 C -0.123 4.123 16 C -0.112 4.112 17 C 0.100 3.900 18 H 0.060 0.940 19 C -0.122 4.122 20 C -0.076 4.076 21 C -0.180 4.180 22 C 0.091 3.909 23 N -0.488 5.488 24 C 0.134 3.866 25 H 0.271 0.729 26 H 0.391 0.609 27 H 0.051 0.949 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.039 0.961 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.151 0.849 38 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.340 -17.761 0.863 17.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.426 4.426 8 H 0.121 0.879 9 N -0.203 5.203 10 C 0.232 3.768 11 O -0.459 6.459 12 C -0.096 4.096 13 N -0.201 5.201 14 C -0.090 4.090 15 C -0.161 4.161 16 C -0.150 4.150 17 C -0.009 4.009 18 H 0.078 0.922 19 C -0.124 4.124 20 C -0.102 4.102 21 C -0.200 4.200 22 C -0.066 4.066 23 N -0.196 5.196 24 C -0.023 4.023 25 H 0.081 0.919 26 H 0.224 0.776 27 H 0.069 0.931 28 H 0.103 0.897 29 H 0.117 0.883 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.168 0.832 38 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -0.608 -17.169 1.873 17.281 hybrid contribution -1.802 0.518 -1.172 2.211 sum -2.410 -16.650 0.701 16.838 Atomic orbital electron populations 1.69613 1.05946 1.28082 1.50868 1.25250 0.95615 0.99679 0.97427 0.85866 0.79284 0.80871 0.78329 1.20460 1.20957 1.19386 1.19692 0.93340 0.82197 1.47413 0.87923 1.41855 1.09129 1.04590 1.64743 1.19646 0.88383 0.84374 0.84369 1.90508 1.13563 1.86957 1.54857 1.22045 0.94205 0.91886 1.01493 1.65011 1.26541 1.00115 1.28402 1.23136 0.99942 0.96867 0.89006 1.22313 1.00337 0.95032 0.98451 1.22309 0.97284 0.96647 0.98751 1.21500 0.96881 0.91424 0.91106 0.92207 1.20697 0.95404 0.99917 0.96417 1.21438 0.96452 0.96518 0.95795 1.22037 1.00930 1.02902 0.94096 1.22772 0.89528 0.94070 1.00256 1.67804 1.22268 1.13017 1.16500 1.22862 0.99052 0.93302 0.87117 0.91937 0.77602 0.93123 0.89716 0.88338 0.94265 0.90824 0.91536 0.90900 0.91340 0.85267 0.85141 0.83200 0.81594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.92 13.05 55.50 0.72 -24.19 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.33 29.55 -169.99 -5.02 16.31 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 7 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 8 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 9 N -0.57 -14.58 5.29 -10.96 -0.06 -14.64 16 10 C 0.45 10.67 7.63 -10.98 -0.08 10.59 16 11 O -0.58 -15.56 14.80 5.55 0.08 -15.48 16 12 C 0.04 0.65 5.27 -4.98 -0.03 0.62 16 13 N -0.48 -7.76 3.86 -224.93 -0.87 -8.63 16 14 C 0.04 0.57 5.92 -2.18 -0.01 0.56 16 15 C -0.12 -1.42 7.00 -25.35 -0.18 -1.59 16 16 C -0.11 -1.21 6.54 -25.35 -0.17 -1.38 16 17 C 0.10 1.28 2.48 -67.22 -0.17 1.11 16 18 H 0.06 0.70 7.93 -51.93 -0.41 0.29 16 19 C -0.12 -1.61 4.52 -104.48 -0.47 -2.08 16 20 C -0.08 -0.84 9.84 -39.27 -0.39 -1.23 16 21 C -0.18 -1.89 10.11 -39.44 -0.40 -2.29 16 22 C 0.09 1.11 11.18 -17.54 -0.20 0.91 16 23 N -0.49 -7.50 10.36 -13.25 -0.14 -7.64 16 24 C 0.13 2.05 10.47 -17.55 -0.18 1.87 16 25 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 26 H 0.39 9.69 7.90 -40.82 -0.32 9.37 16 27 H 0.05 0.84 7.77 -51.93 -0.40 0.43 16 28 H 0.08 1.49 7.78 -51.93 -0.40 1.09 16 29 H 0.10 1.77 7.24 -51.93 -0.38 1.39 16 30 H 0.04 0.56 7.75 -51.93 -0.40 0.16 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.81 7.81 -51.93 -0.41 0.40 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.17 2.77 7.66 -52.49 -0.40 2.37 16 LS Contribution 320.26 15.07 4.83 4.83 Total: -1.00 -31.97 320.26 -8.14 -40.11 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -5.17 Total: 10.28 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -2.51 Total: -0.94 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: -0.34 Total: -55.10 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: 0.08 Total: -15.48 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.97 -8.14 -40.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330698869.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.107 kcal (2) G-P(sol) polarization free energy of solvation -31.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds