Wall clock time and date at job start Mon Mar 30 2020 01:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86802 * 119.99750 * 2 1 4 4 H 1.48498 * 109.46888 * 269.99484 * 3 2 1 5 5 H 1.48500 * 109.47241 * 29.99491 * 3 2 1 6 6 H 1.48501 * 109.47014 * 149.99714 * 3 2 1 7 7 C 1.38955 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99624 * 180.02562 * 7 2 1 9 9 N 1.37093 * 119.99886 * 0.02562 * 7 2 1 10 10 C 1.34778 * 119.99879 * 179.97438 * 9 7 2 11 11 O 1.21289 * 119.99863 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00032 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.46954 * 179.97438 * 12 10 9 14 14 C 1.48558 * 111.00499 * 285.42153 * 13 12 10 15 15 C 1.54379 * 104.59447 * 200.96130 * 14 13 12 16 16 C 1.54251 * 105.06464 * 23.85268 * 15 14 13 17 17 C 1.48566 * 110.99819 * 169.99801 * 13 12 10 18 18 H 1.08995 * 110.50918 * 40.21948 * 17 13 12 19 19 C 1.50692 * 110.41553 * 277.82053 * 17 13 12 20 20 C 1.38678 * 120.41979 * 143.34813 * 19 17 13 21 21 C 1.38628 * 118.42181 * 180.02562 * 20 19 17 22 22 C 1.38230 * 119.15851 * 359.97438 * 21 20 19 23 23 N 1.31854 * 120.76583 * 0.02562 * 22 21 20 24 24 C 1.31878 * 121.72440 * 0.02562 * 23 22 21 25 25 H 0.97001 * 120.00496 * 0.02562 * 1 2 3 26 26 H 0.97002 * 120.00223 * 359.97438 * 9 7 2 27 27 H 1.09001 * 109.47117 * 60.00643 * 12 10 9 28 28 H 1.08998 * 109.47318 * 300.00269 * 12 10 9 29 29 H 1.08992 * 110.41247 * 82.17710 * 14 13 12 30 30 H 1.09006 * 110.50670 * 319.78856 * 14 13 12 31 31 H 1.08997 * 110.32212 * 264.95148 * 15 14 13 32 32 H 1.09002 * 110.40762 * 142.79128 * 15 14 13 33 33 H 1.09003 * 110.32835 * 241.10802 * 16 15 14 34 34 H 1.09000 * 110.33129 * 118.89380 * 16 15 14 35 35 H 1.08001 * 120.78723 * 0.04921 * 20 19 17 36 36 H 1.07992 * 120.41719 * 180.02562 * 21 20 19 37 37 H 1.08001 * 119.61116 * 180.30080 * 22 21 20 38 38 H 1.08001 * 119.61470 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4454 2.6527 0.6999 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2439 -4.8629 0.0011 13 7 2.1985 -5.9794 0.0004 14 6 2.8238 -6.1445 -1.3370 15 6 3.3416 -7.5989 -1.3476 16 6 2.4750 -8.3404 -0.3090 17 6 1.5065 -7.2717 0.2418 18 1 0.5591 -7.3040 -0.2962 19 6 1.2793 -7.4788 1.7171 20 6 0.1188 -8.0880 2.1701 21 6 -0.0477 -8.2571 3.5359 22 6 0.9418 -7.8165 4.3947 23 7 2.0327 -7.2413 3.9282 24 6 2.2242 -7.0631 2.6356 25 1 -0.4851 0.8400 -0.0004 26 1 0.3534 -2.3907 0.0005 27 1 0.6169 -4.9209 -0.8887 28 1 0.6175 -4.9205 0.8913 29 1 3.6512 -5.4455 -1.4587 30 1 2.0847 -5.9984 -2.1248 31 1 4.3913 -7.6291 -1.0557 32 1 3.2110 -8.0417 -2.3350 33 1 3.0994 -8.7347 0.4928 34 1 1.9177 -9.1461 -0.7869 35 1 -0.6371 -8.4230 1.4753 36 1 -0.9388 -8.7279 3.9239 37 1 0.8218 -7.9490 5.4598 38 1 3.1305 -6.5875 2.2910 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330698869.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:23 Heat of formation + Delta-G solvation = -15.352671 kcal Electronic energy + Delta-G solvation = -21025.101294 eV Core-core repulsion = 17866.421440 eV Total energy + Delta-G solvation = -3158.679854 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.41306 -40.29657 -39.03934 -35.95641 -33.79837 -33.45543 -32.95886 -32.50740 -28.83530 -28.32776 -26.08924 -24.55038 -24.05333 -22.12343 -21.28139 -20.95098 -19.88885 -18.13484 -17.64481 -17.42638 -16.75843 -16.71386 -16.25816 -16.00395 -15.61688 -15.17943 -14.85911 -14.71572 -14.34847 -14.03090 -13.88422 -13.64674 -13.53796 -13.10549 -13.08493 -12.90992 -12.42838 -12.27453 -12.21799 -12.12768 -11.99283 -11.50511 -11.40559 -10.66898 -10.41585 -10.28733 -10.01603 -9.81091 -9.37655 -8.47427 -5.96066 0.23698 0.42439 1.36662 1.40002 1.53084 2.04778 2.27414 2.73181 2.94778 3.18897 3.32443 3.59376 3.74258 3.83063 4.01044 4.08827 4.12771 4.20280 4.22012 4.30560 4.39483 4.45427 4.48817 4.66613 4.68904 4.85204 4.95373 5.00538 5.08840 5.22316 5.26453 5.29006 5.37044 5.40192 5.83851 5.86212 5.99009 6.09105 6.59871 7.12369 7.13693 7.55382 8.11758 8.70279 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.019566 B = 0.004647 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.706954 B = 6024.481690 C = 6848.474161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.013 4.013 3 Si 0.992 3.008 4 H -0.269 1.269 5 H -0.270 1.270 6 H -0.275 1.275 7 C -0.332 4.332 8 H 0.077 0.923 9 N -0.576 5.576 10 C 0.443 3.557 11 O -0.613 6.613 12 C 0.052 3.948 13 N -0.502 5.502 14 C 0.035 3.965 15 C -0.114 4.114 16 C -0.104 4.104 17 C 0.103 3.897 18 H 0.083 0.917 19 C -0.127 4.127 20 C -0.072 4.072 21 C -0.167 4.167 22 C 0.076 3.924 23 N -0.525 5.525 24 C 0.105 3.895 25 H 0.277 0.723 26 H 0.395 0.605 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.057 0.943 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.065 0.935 34 H 0.101 0.899 35 H 0.164 0.836 36 H 0.169 0.831 37 H 0.174 0.826 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.546 -19.492 0.547 20.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.212 4.212 3 Si 0.816 3.184 4 H -0.194 1.194 5 H -0.195 1.195 6 H -0.200 1.200 7 C -0.462 4.462 8 H 0.095 0.905 9 N -0.214 5.214 10 C 0.231 3.769 11 O -0.499 6.499 12 C -0.079 4.079 13 N -0.226 5.226 14 C -0.092 4.092 15 C -0.152 4.152 16 C -0.142 4.142 17 C -0.005 4.005 18 H 0.100 0.900 19 C -0.129 4.129 20 C -0.098 4.098 21 C -0.187 4.187 22 C -0.081 4.081 23 N -0.234 5.234 24 C -0.051 4.051 25 H 0.087 0.913 26 H 0.228 0.772 27 H 0.092 0.908 28 H 0.111 0.889 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.112 0.888 33 H 0.084 0.916 34 H 0.120 0.880 35 H 0.182 0.818 36 H 0.187 0.813 37 H 0.191 0.809 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.831 -18.919 1.550 19.192 hybrid contribution -1.124 0.994 -1.012 1.810 sum -3.955 -17.925 0.538 18.364 Atomic orbital electron populations 1.69672 1.06828 1.29258 1.50540 1.26027 0.96541 1.02353 0.96314 0.84939 0.77836 0.76903 0.78725 1.19418 1.19491 1.19955 1.19643 0.92624 0.84022 1.49862 0.90458 1.41929 1.09207 1.04736 1.65526 1.20717 0.88298 0.85821 0.82112 1.90481 1.15636 1.87841 1.55940 1.21817 0.93868 0.89429 1.02808 1.64918 1.27135 1.01272 1.29249 1.23085 0.98922 0.98373 0.88860 1.22272 0.99936 0.92707 1.00320 1.22311 0.96889 0.96676 0.98293 1.21612 0.97947 0.89714 0.91269 0.89951 1.20740 0.95786 1.00262 0.96137 1.21843 0.95960 0.95252 0.96781 1.22458 1.01300 1.01202 0.93699 1.23288 0.89154 0.93685 1.01925 1.67696 1.24364 1.14566 1.16751 1.22527 0.99244 0.95312 0.88005 0.91315 0.77188 0.90800 0.88938 0.92462 0.93323 0.91609 0.88754 0.91596 0.88034 0.81830 0.81323 0.80869 0.84740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.76 13.05 21.66 0.28 -50.48 16 2 C -0.01 -0.70 5.50 84.93 0.47 -0.24 16 3 Si 0.99 43.96 29.55 68.60 2.03 45.98 16 4 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 6 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.33 -19.39 9.68 84.04 0.81 -18.58 16 8 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 9 N -0.58 -30.63 5.29 -306.99 -1.62 -32.25 16 10 C 0.44 21.93 7.63 87.66 0.67 22.60 16 11 O -0.61 -35.05 14.80 -3.06 -0.05 -35.09 16 12 C 0.05 1.90 5.27 85.56 0.45 2.35 16 13 N -0.50 -16.33 3.86 -865.56 -3.34 -19.67 16 14 C 0.04 1.07 5.92 86.45 0.51 1.58 16 15 C -0.11 -2.47 7.00 31.49 0.22 -2.25 16 16 C -0.10 -1.99 6.54 31.49 0.21 -1.78 16 17 C 0.10 2.41 2.48 44.32 0.11 2.52 16 18 H 0.08 1.59 7.93 -2.39 -0.02 1.58 16 19 C -0.13 -3.15 4.52 -19.77 -0.09 -3.23 16 20 C -0.07 -1.34 9.84 22.47 0.22 -1.12 16 21 C -0.17 -2.92 10.11 22.36 0.23 -2.69 16 22 C 0.08 1.74 11.18 84.69 0.95 2.69 16 23 N -0.52 -16.37 10.36 -195.84 -2.03 -18.39 16 24 C 0.11 3.32 10.47 84.67 0.89 4.21 16 25 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 26 H 0.39 19.95 7.90 -92.71 -0.73 19.22 16 27 H 0.07 2.32 7.77 -2.39 -0.02 2.31 16 28 H 0.09 3.20 7.78 -2.39 -0.02 3.18 16 29 H 0.06 2.18 7.24 -2.39 -0.02 2.17 16 30 H 0.05 1.35 7.75 -2.38 -0.02 1.33 16 31 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.07 1.37 7.81 -2.39 -0.02 1.35 16 34 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 36 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 37 H 0.17 2.90 8.06 -2.91 -0.02 2.87 16 38 H 0.14 4.92 7.66 -2.91 -0.02 4.90 16 Total: -1.00 -73.04 320.26 1.25 -71.79 By element: Atomic # 1 Polarization: 31.72 SS G_CDS: 0.34 Total: 32.05 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: 5.64 Total: 6.06 kcal Atomic # 7 Polarization: -114.08 SS G_CDS: -6.71 Total: -120.79 kcal Atomic # 8 Polarization: -35.05 SS G_CDS: -0.05 Total: -35.09 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -73.04 1.25 -71.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330698869.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.440 kcal (2) G-P(sol) polarization free energy of solvation -73.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds