Wall clock time and date at job start Mon Mar 30 2020 01:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86806 * 119.99981 * 2 1 4 4 H 1.48494 * 109.47211 * 270.00293 * 3 2 1 5 5 H 1.48501 * 109.46668 * 30.00378 * 3 2 1 6 6 H 1.48502 * 109.47034 * 149.99930 * 3 2 1 7 7 C 1.37883 * 120.00387 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99729 * 180.27244 * 7 2 1 9 9 C 1.50701 * 119.99516 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46453 * 179.97438 * 9 7 2 11 11 C 1.30105 * 119.99932 * 114.32419 * 10 9 7 12 12 O 1.35249 * 120.00250 * 172.42366 * 11 10 9 13 13 C 1.47792 * 119.99677 * 352.41775 * 11 10 9 14 14 C 1.40216 * 120.46586 * 315.69560 * 13 11 10 15 15 C 1.36932 * 118.49665 * 179.77778 * 14 13 11 16 16 C 1.39328 * 119.37218 * 0.48024 * 15 14 13 17 17 N 1.38622 * 119.54930 * 179.73839 * 16 15 14 18 18 C 1.48536 * 110.99699 * 62.62947 * 17 16 15 19 19 C 1.54935 * 103.22699 * 159.71876 * 18 17 16 20 20 C 1.54595 * 102.92305 * 322.58576 * 19 18 17 21 21 C 1.47901 * 110.99733 * 180.02562 * 17 16 15 22 22 N 1.32547 * 120.90228 * 359.76446 * 16 15 14 23 23 C 1.31740 * 121.63010 * 359.97438 * 22 16 15 24 24 H 0.97008 * 120.00363 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47150 * 299.99801 * 9 7 2 26 26 H 1.08997 * 109.47186 * 60.00167 * 9 7 2 27 27 H 0.96705 * 114.00394 * 179.97438 * 12 11 10 28 28 H 1.08000 * 120.75163 * 0.02562 * 14 13 11 29 29 H 1.08007 * 120.31645 * 180.24343 * 15 14 13 30 30 H 1.08998 * 110.66271 * 278.15296 * 18 17 16 31 31 H 1.09002 * 110.67044 * 41.28708 * 18 17 16 32 32 H 1.08993 * 110.72724 * 204.22637 * 19 18 17 33 33 H 1.09000 * 110.87389 * 81.01268 * 19 18 17 34 34 H 1.09003 * 110.30927 * 263.04140 * 20 19 18 35 35 H 1.08999 * 110.31505 * 140.87150 * 20 19 18 36 36 H 1.08990 * 109.92479 * 333.51257 * 21 17 16 37 37 H 1.09004 * 109.91591 * 94.81119 * 21 17 16 38 38 H 1.08003 * 119.73413 * 180.02562 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1939 0.0039 9 6 1.2510 -2.4992 -0.0017 10 7 2.2031 -3.6126 -0.0027 11 6 2.2732 -4.4095 1.0233 12 8 3.0378 -5.5235 0.9634 13 6 1.5172 -4.0974 2.2543 14 6 1.5040 -2.7932 2.7691 15 6 0.7866 -2.5482 3.9094 16 6 0.1045 -3.5950 4.5258 17 7 -0.6185 -3.3522 5.6834 18 6 -1.7236 -2.3928 5.4293 19 6 -2.6925 -2.6469 6.6113 20 6 -2.6069 -4.1783 6.8054 21 6 -1.2633 -4.5892 6.1748 22 7 0.1377 -4.8200 4.0208 23 6 0.8115 -5.0968 2.9231 24 1 -0.4851 0.8401 0.0004 25 1 0.6240 -2.5575 0.8880 26 1 0.6247 -2.5563 -0.8919 27 1 3.0271 -6.0520 1.7732 28 1 2.0442 -1.9991 2.2751 29 1 0.7530 -1.5536 4.3292 30 1 -1.3547 -1.3673 5.4479 31 1 -2.2110 -2.6103 4.4789 32 1 -3.7073 -2.3475 6.3495 33 1 -2.3570 -2.1252 7.5076 34 1 -3.4323 -4.6714 6.2919 35 1 -2.6183 -4.4264 7.8667 36 1 -1.4368 -5.2729 5.3440 37 1 -0.6312 -5.0647 6.9248 38 1 0.8174 -6.1058 2.5382 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331217628.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:05 Heat of formation + Delta-G solvation = 6.416239 kcal Electronic energy + Delta-G solvation = -21112.416777 eV Core-core repulsion = 17954.680894 eV Total energy + Delta-G solvation = -3157.735883 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.96838 -40.06822 -38.63101 -36.62396 -34.55741 -33.58033 -33.32054 -30.30386 -29.91727 -29.13565 -25.45292 -24.71926 -24.51357 -22.35346 -21.58178 -21.17529 -19.34965 -18.62104 -18.43267 -17.76091 -16.89987 -16.62085 -16.21874 -15.73467 -15.52612 -15.31584 -14.96856 -14.72721 -14.39545 -14.26116 -14.19034 -13.58158 -13.48976 -13.15801 -13.05912 -12.94539 -12.74423 -12.26906 -12.23991 -12.13009 -11.85614 -11.46449 -11.14302 -10.89141 -10.82024 -10.55911 -10.11174 -9.76522 -9.13655 -8.27079 -6.40732 -0.26762 0.24608 1.36868 1.38568 1.48545 1.58056 2.33862 2.43229 2.64562 2.80085 3.02774 3.28537 3.42619 3.62487 3.79392 3.92480 3.98966 4.09506 4.18795 4.31740 4.51334 4.61154 4.69308 4.84333 4.91827 4.93230 4.99458 5.00964 5.05385 5.12512 5.17850 5.27456 5.29405 5.40374 5.58576 5.64352 6.03409 6.03862 6.50898 6.67791 6.78084 7.22222 7.47114 8.81433 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.015384 B = 0.005927 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.637023 B = 4723.092185 C = 6163.226663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.019 3.981 3 Si 0.964 3.036 4 H -0.274 1.274 5 H -0.273 1.273 6 H -0.267 1.267 7 C -0.532 4.532 8 H 0.051 0.949 9 C 0.202 3.798 10 N -0.569 5.569 11 C 0.378 3.622 12 O -0.470 6.470 13 C -0.219 4.219 14 C -0.013 4.013 15 C -0.189 4.189 16 C 0.313 3.687 17 N -0.468 5.468 18 C 0.037 3.963 19 C -0.115 4.115 20 C -0.126 4.126 21 C 0.032 3.968 22 N -0.525 5.525 23 C 0.155 3.845 24 H 0.269 0.731 25 H 0.010 0.990 26 H 0.004 0.996 27 H 0.423 0.577 28 H 0.130 0.870 29 H 0.141 0.859 30 H 0.091 0.909 31 H 0.040 0.960 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.740 -8.511 16.434 19.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.181 4.181 3 Si 0.788 3.212 4 H -0.200 1.200 5 H -0.198 1.198 6 H -0.191 1.191 7 C -0.570 4.570 8 H 0.069 0.931 9 C 0.076 3.924 10 N -0.298 5.298 11 C 0.148 3.852 12 O -0.268 6.268 13 C -0.226 4.226 14 C -0.040 4.040 15 C -0.211 4.211 16 C 0.081 3.919 17 N -0.186 5.186 18 C -0.088 4.088 19 C -0.153 4.153 20 C -0.165 4.165 21 C -0.095 4.095 22 N -0.239 5.239 23 C -0.004 4.004 24 H 0.078 0.922 25 H 0.027 0.973 26 H 0.022 0.978 27 H 0.279 0.721 28 H 0.148 0.852 29 H 0.159 0.841 30 H 0.110 0.890 31 H 0.058 0.942 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.111 0.889 36 H 0.088 0.912 37 H 0.103 0.897 38 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -4.523 -8.521 15.871 18.573 hybrid contribution 0.020 1.325 -0.340 1.368 sum -4.503 -7.196 15.531 17.699 Atomic orbital electron populations 1.70053 1.07427 1.28247 1.50111 1.25777 0.95709 1.02582 0.94069 0.85463 0.78676 0.78418 0.78622 1.19978 1.19792 1.19124 1.21227 0.93022 0.90674 1.52089 0.93111 1.19632 0.89822 0.87584 0.95408 1.71512 1.22098 1.08446 1.27725 1.21089 0.88440 0.87140 0.88522 1.84700 1.65113 1.32679 1.44339 1.20928 1.06855 0.96296 0.98547 1.21637 0.93683 0.96175 0.92470 1.21266 1.01538 1.00730 0.97570 1.20184 0.93716 0.89195 0.88791 1.61850 1.22406 1.12924 1.21380 1.23433 0.89964 0.96486 0.98937 1.22520 0.99121 0.96401 0.97258 1.22459 0.95762 0.95745 1.02489 1.22975 0.95564 0.90663 1.00249 1.67655 1.21581 1.21114 1.13570 1.23121 0.89214 0.99493 0.88536 0.92224 0.97262 0.97789 0.72085 0.85237 0.84136 0.89046 0.94163 0.88956 0.89363 0.90541 0.88879 0.91185 0.89724 0.78541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.61 13.29 21.45 0.28 -53.33 16 2 C 0.02 1.06 5.46 84.66 0.46 1.52 16 3 Si 0.96 43.70 29.54 68.60 2.03 45.73 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.53 -30.79 7.86 25.60 0.20 -30.59 16 8 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 9 C 0.20 11.32 5.26 85.63 0.45 11.77 16 10 N -0.57 -28.71 10.60 -459.30 -4.87 -33.58 16 11 C 0.38 14.98 7.78 87.48 0.68 15.66 16 12 O -0.47 -14.49 13.62 -85.32 -1.16 -15.65 16 13 C -0.22 -7.86 4.75 -19.98 -0.09 -7.96 16 14 C -0.01 -0.51 7.48 22.44 0.17 -0.34 16 15 C -0.19 -6.65 9.38 22.23 0.21 -6.44 16 16 C 0.31 9.87 6.20 133.20 0.83 10.69 16 17 N -0.47 -12.30 5.28 -689.39 -3.64 -15.94 16 18 C 0.04 0.87 6.03 86.65 0.52 1.39 16 19 C -0.12 -1.84 7.06 31.80 0.22 -1.62 16 20 C -0.13 -1.95 6.93 31.48 0.22 -1.73 16 21 C 0.03 0.69 6.34 86.45 0.55 1.24 16 22 N -0.53 -15.75 8.11 -192.35 -1.56 -17.31 16 23 C 0.16 4.44 10.46 84.99 0.89 5.33 16 24 H 0.27 14.63 8.31 -92.70 -0.77 13.86 16 25 H 0.01 0.55 4.83 -2.39 -0.01 0.54 16 26 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 27 H 0.42 7.17 8.28 -74.05 -0.61 6.56 16 28 H 0.13 6.08 5.83 -2.91 -0.02 6.06 16 29 H 0.14 4.66 8.02 -2.91 -0.02 4.63 16 30 H 0.09 2.12 8.12 -2.39 -0.02 2.10 16 31 H 0.04 1.08 8.00 -2.39 -0.02 1.06 16 32 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.07 1.70 6.48 -2.39 -0.02 1.69 16 37 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 38 H 0.20 3.87 7.95 -2.91 -0.02 3.85 16 Total: -1.00 -71.85 315.24 -3.15 -75.00 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.47 Total: 16.17 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: 5.30 Total: -1.08 kcal Atomic # 7 Polarization: -110.37 SS G_CDS: -9.79 Total: -120.16 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -1.16 Total: -15.65 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -71.85 -3.15 -75.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331217628.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.413 kcal (2) G-P(sol) polarization free energy of solvation -71.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds