Wall clock time and date at job start Mon Mar 30 2020 02:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86803 * 119.99954 * 2 1 4 4 H 1.48496 * 109.47050 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47357 * 300.00650 * 3 2 1 6 6 H 1.48500 * 109.46773 * 60.00680 * 3 2 1 7 7 C 1.38986 * 119.99949 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99578 * 186.58093 * 7 2 1 9 9 N 1.36941 * 120.00078 * 6.57421 * 7 2 1 10 10 C 1.34780 * 120.00313 * 45.06388 * 9 7 2 11 11 O 1.21658 * 119.99416 * 5.15078 * 10 9 7 12 12 C 1.47231 * 120.00404 * 185.15662 * 10 9 7 13 13 C 1.36671 * 126.19979 * 174.35903 * 12 10 9 14 14 N 1.35415 * 106.67373 * 179.97438 * 13 12 10 15 15 C 1.36388 * 107.77372 * 0.03732 * 14 13 12 16 16 N 1.29721 * 108.94836 * 359.96806 * 15 14 13 17 17 C 1.51110 * 123.82420 * 179.85177 * 15 14 13 18 18 C 1.53384 * 108.23593 * 344.09913 * 17 15 14 19 19 C 1.53136 * 109.25932 * 48.94163 * 18 17 15 20 20 C 1.46566 * 127.54634 * 180.11003 * 14 13 12 21 21 C 1.46508 * 120.00306 * 225.06072 * 9 7 2 22 22 C 1.52996 * 117.49471 * 2.33372 * 21 9 7 23 23 C 1.52991 * 59.99928 * 252.51100 * 22 21 9 24 24 H 0.97000 * 120.00051 * 4.98722 * 1 2 3 25 25 H 1.07998 * 126.66441 * 359.93930 * 13 12 10 26 26 H 1.09010 * 109.71357 * 224.40291 * 17 15 14 27 27 H 1.08998 * 109.71896 * 103.80209 * 17 15 14 28 28 H 1.09002 * 109.50180 * 168.87235 * 18 17 15 29 29 H 1.08997 * 109.50982 * 289.00649 * 18 17 15 30 30 H 1.09007 * 109.46179 * 50.22394 * 19 18 17 31 31 H 1.08999 * 109.45944 * 170.18517 * 19 18 17 32 32 H 1.09003 * 109.58234 * 42.99852 * 20 14 13 33 33 H 1.08993 * 109.58572 * 282.57798 * 20 14 13 34 34 H 1.08996 * 115.55023 * 148.03838 * 21 9 7 35 35 H 1.09005 * 117.50010 * 359.97438 * 22 21 9 36 36 H 1.09001 * 117.49976 * 145.02244 * 22 21 9 37 37 H 1.09001 * 117.50057 * 252.51178 * 23 22 21 38 38 H 1.09002 * 117.52094 * 107.48371 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3464 -0.0006 5 1 1.8892 2.3966 -1.2124 6 1 1.8894 2.3963 1.2126 7 6 2.0090 -1.2037 -0.0005 8 1 3.0836 -1.2067 0.1067 9 7 1.3310 -2.3856 -0.1368 10 6 0.3677 -2.5061 -1.0717 11 8 0.1642 -1.5985 -1.8558 12 6 -0.4385 -3.7360 -1.1440 13 6 -1.5113 -3.9510 -1.9630 14 7 -1.9508 -5.2058 -1.7062 15 6 -1.1485 -5.7385 -0.7404 16 7 -0.2507 -4.8630 -0.4085 17 6 -1.3203 -7.1303 -0.1774 18 6 -2.7171 -7.6343 -0.5615 19 6 -2.9432 -7.4044 -2.0585 20 6 -3.0786 -5.9026 -2.3313 21 6 1.6529 -3.5194 0.7335 22 6 2.7176 -3.3030 1.8107 23 6 3.0355 -4.1565 0.5814 24 1 -0.4850 0.8369 -0.0730 25 1 -1.9279 -3.2551 -2.6761 26 1 -1.2251 -7.1022 0.9081 27 1 -0.5624 -7.7924 -0.5960 28 1 -2.7930 -8.6992 -0.3413 29 1 -3.4700 -7.0896 0.0081 30 1 -2.0961 -7.8005 -2.6188 31 1 -3.8548 -7.9139 -2.3706 32 1 -3.0677 -5.7241 -3.4066 33 1 -4.0140 -5.5372 -1.9077 34 1 0.8188 -4.1783 0.9750 35 1 3.1789 -2.3172 1.8715 36 1 2.5842 -3.8195 2.7612 37 1 3.1112 -5.2346 0.7231 38 1 3.7055 -3.7325 -0.1666 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334340848.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:44 Heat of formation + Delta-G solvation = 71.239726 kcal Electronic energy + Delta-G solvation = -21727.930530 eV Core-core repulsion = 18573.005604 eV Total energy + Delta-G solvation = -3154.924926 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.79242 -38.13339 -36.37395 -35.60100 -33.11561 -32.60674 -30.71523 -29.51412 -28.17064 -25.41100 -24.04336 -22.15638 -22.05152 -21.33803 -20.53871 -19.12079 -18.62128 -16.98429 -15.89362 -15.86114 -15.69822 -14.64576 -14.33093 -14.16958 -14.14008 -13.84318 -13.46894 -13.34059 -13.12760 -12.74277 -12.43942 -11.74009 -11.65737 -11.31172 -11.21692 -11.12734 -10.95095 -10.81800 -10.64166 -10.43432 -10.11746 -9.79463 -9.64352 -9.17020 -8.84064 -8.60521 -7.95442 -7.73817 -6.79907 -5.89899 -3.74104 2.38130 3.00913 3.22549 3.39510 3.44658 3.47674 4.31532 4.38814 4.45801 4.53702 4.58971 4.85844 5.06703 5.14800 5.19191 5.20005 5.27566 5.40645 5.47105 5.56117 5.61021 5.66623 5.78368 5.94132 5.99138 6.11330 6.15965 6.24115 6.52538 6.54676 6.63464 6.74507 7.04897 7.17266 7.39142 7.64971 7.75925 8.40824 8.52817 9.24836 9.39805 9.83517 10.54266 11.13809 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.026461 B = 0.005658 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.909555 B = 4947.757944 C = 5745.973771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.058 3.942 3 Si 0.912 3.088 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.285 1.285 7 C -0.329 4.329 8 H 0.078 0.922 9 N -0.418 5.418 10 C 0.559 3.441 11 O -0.534 6.534 12 C -0.012 4.012 13 C 0.000 4.000 14 N -0.463 5.463 15 C 0.188 3.812 16 N -0.456 5.456 17 C -0.030 4.030 18 C -0.125 4.125 19 C -0.133 4.133 20 C 0.105 3.895 21 C 0.086 3.914 22 C -0.190 4.190 23 C -0.205 4.205 24 H 0.262 0.738 25 H 0.180 0.820 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.144 0.856 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.850 -16.364 -1.385 17.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.151 4.151 3 Si 0.739 3.261 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.211 1.211 7 C -0.457 4.457 8 H 0.096 0.904 9 N -0.138 5.138 10 C 0.346 3.654 11 O -0.412 6.412 12 C -0.142 4.142 13 C -0.135 4.135 14 N -0.148 5.148 15 C -0.074 4.074 16 N -0.177 5.177 17 C -0.068 4.068 18 C -0.163 4.163 19 C -0.171 4.171 20 C -0.018 4.018 21 C -0.021 4.021 22 C -0.227 4.227 23 C -0.244 4.244 24 H 0.072 0.928 25 H 0.197 0.803 26 H 0.111 0.889 27 H 0.104 0.896 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.161 0.839 35 H 0.118 0.882 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.617 -15.874 -1.230 17.242 hybrid contribution -0.291 1.026 -0.628 1.238 sum -6.908 -14.848 -1.858 16.481 Atomic orbital electron populations 1.69882 1.06225 1.27062 1.43535 1.25319 0.95024 0.99215 0.95569 0.86133 0.79679 0.82835 0.77415 1.19587 1.20836 1.21131 1.18984 0.90985 0.82594 1.53108 0.90446 1.42538 1.33806 1.09687 1.27720 1.16516 0.82794 0.83701 0.82368 1.90602 1.69097 1.39790 1.41673 1.21505 0.98971 0.95225 0.98466 1.22435 0.99439 0.86719 1.04912 1.45311 1.25378 1.12547 1.31592 1.23531 0.92066 0.97916 0.93883 1.70426 1.22132 1.00813 1.24317 1.20133 0.97232 0.87959 1.01521 1.21662 0.97115 1.01970 0.95519 1.21872 1.03507 0.94082 0.97644 1.21915 0.88346 0.92702 0.98805 1.22436 0.92234 0.92498 0.94885 1.23095 1.05785 1.01423 0.92438 1.23146 1.02835 0.97436 1.01026 0.92800 0.80319 0.88918 0.89621 0.90279 0.91184 0.90670 0.89640 0.89465 0.90069 0.83908 0.88152 0.90204 0.90165 0.89944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -25.98 11.13 55.50 0.62 -25.36 16 2 C 0.06 1.72 4.75 -17.46 -0.08 1.63 16 3 Si 0.91 22.62 29.56 -169.99 -5.03 17.60 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 7 C -0.33 -9.65 7.93 -14.99 -0.12 -9.77 16 8 H 0.08 2.20 7.20 -52.49 -0.38 1.82 16 9 N -0.42 -11.74 2.85 -109.00 -0.31 -12.05 16 10 C 0.56 15.99 6.76 -12.61 -0.09 15.91 16 11 O -0.53 -16.91 14.58 5.23 0.08 -16.83 16 12 C -0.01 -0.29 6.73 -82.99 -0.56 -0.85 16 13 C 0.00 0.00 11.36 -16.54 -0.19 -0.19 16 14 N -0.46 -7.17 3.13 -113.25 -0.35 -7.52 16 15 C 0.19 3.08 7.65 -154.61 -1.18 1.90 16 16 N -0.46 -9.49 7.68 -7.01 -0.05 -9.54 16 17 C -0.03 -0.32 6.33 -27.48 -0.17 -0.50 16 18 C -0.12 -0.98 5.95 -26.46 -0.16 -1.14 16 19 C -0.13 -0.99 5.93 -26.54 -0.16 -1.14 16 20 C 0.10 1.04 6.96 -3.88 -0.03 1.01 16 21 C 0.09 2.02 5.47 -67.93 -0.37 1.65 16 22 C -0.19 -3.96 9.80 -26.74 -0.26 -4.22 16 23 C -0.21 -4.21 10.37 -26.74 -0.28 -4.48 16 24 H 0.26 7.77 8.32 -40.82 -0.34 7.43 16 25 H 0.18 3.31 8.06 -52.49 -0.42 2.89 16 26 H 0.09 0.97 8.14 -51.92 -0.42 0.55 16 27 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 30 H 0.07 0.58 8.11 -51.92 -0.42 0.16 16 31 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.14 3.33 5.24 -51.93 -0.27 3.06 16 35 H 0.10 2.24 6.72 -51.93 -0.35 1.89 16 36 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 37 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 LS Contribution 311.31 15.07 4.69 4.69 Total: -1.00 -36.85 311.31 -9.21 -46.06 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -5.20 Total: 3.15 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -3.64 Total: -0.19 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: -0.10 Total: -54.48 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: 0.08 Total: -16.83 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.03 Total: 17.60 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -36.85 -9.21 -46.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334340848.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.300 kcal (2) G-P(sol) polarization free energy of solvation -36.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds