Wall clock time and date at job start Mon Mar 30 2020 02:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86803 * 119.99954 * 2 1 4 4 H 1.48496 * 109.47050 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47357 * 300.00650 * 3 2 1 6 6 H 1.48500 * 109.46773 * 60.00680 * 3 2 1 7 7 C 1.38986 * 119.99949 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99578 * 186.58093 * 7 2 1 9 9 N 1.36941 * 120.00078 * 6.57421 * 7 2 1 10 10 C 1.34780 * 120.00313 * 45.06388 * 9 7 2 11 11 O 1.21658 * 119.99416 * 5.15078 * 10 9 7 12 12 C 1.47231 * 120.00404 * 185.15662 * 10 9 7 13 13 C 1.36671 * 126.19979 * 174.35903 * 12 10 9 14 14 N 1.35415 * 106.67373 * 179.97438 * 13 12 10 15 15 C 1.36388 * 107.77372 * 0.03732 * 14 13 12 16 16 N 1.29721 * 108.94836 * 359.96806 * 15 14 13 17 17 C 1.51110 * 123.82420 * 179.85177 * 15 14 13 18 18 C 1.53384 * 108.23593 * 344.09913 * 17 15 14 19 19 C 1.53136 * 109.25932 * 48.94163 * 18 17 15 20 20 C 1.46566 * 127.54634 * 180.11003 * 14 13 12 21 21 C 1.46508 * 120.00306 * 225.06072 * 9 7 2 22 22 C 1.52996 * 117.49471 * 2.33372 * 21 9 7 23 23 C 1.52991 * 59.99928 * 252.51100 * 22 21 9 24 24 H 0.97000 * 120.00051 * 4.98722 * 1 2 3 25 25 H 1.07998 * 126.66441 * 359.93930 * 13 12 10 26 26 H 1.09010 * 109.71357 * 224.40291 * 17 15 14 27 27 H 1.08998 * 109.71896 * 103.80209 * 17 15 14 28 28 H 1.09002 * 109.50180 * 168.87235 * 18 17 15 29 29 H 1.08997 * 109.50982 * 289.00649 * 18 17 15 30 30 H 1.09007 * 109.46179 * 50.22394 * 19 18 17 31 31 H 1.08999 * 109.45944 * 170.18517 * 19 18 17 32 32 H 1.09003 * 109.58234 * 42.99852 * 20 14 13 33 33 H 1.08993 * 109.58572 * 282.57798 * 20 14 13 34 34 H 1.08996 * 115.55023 * 148.03838 * 21 9 7 35 35 H 1.09005 * 117.50010 * 359.97438 * 22 21 9 36 36 H 1.09001 * 117.49976 * 145.02244 * 22 21 9 37 37 H 1.09001 * 117.50057 * 252.51178 * 23 22 21 38 38 H 1.09002 * 117.52094 * 107.48371 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3464 -0.0006 5 1 1.8892 2.3966 -1.2124 6 1 1.8894 2.3963 1.2126 7 6 2.0090 -1.2037 -0.0005 8 1 3.0836 -1.2067 0.1067 9 7 1.3310 -2.3856 -0.1368 10 6 0.3677 -2.5061 -1.0717 11 8 0.1642 -1.5985 -1.8558 12 6 -0.4385 -3.7360 -1.1440 13 6 -1.5113 -3.9510 -1.9630 14 7 -1.9508 -5.2058 -1.7062 15 6 -1.1485 -5.7385 -0.7404 16 7 -0.2507 -4.8630 -0.4085 17 6 -1.3203 -7.1303 -0.1774 18 6 -2.7171 -7.6343 -0.5615 19 6 -2.9432 -7.4044 -2.0585 20 6 -3.0786 -5.9026 -2.3313 21 6 1.6529 -3.5194 0.7335 22 6 2.7176 -3.3030 1.8107 23 6 3.0355 -4.1565 0.5814 24 1 -0.4850 0.8369 -0.0730 25 1 -1.9279 -3.2551 -2.6761 26 1 -1.2251 -7.1022 0.9081 27 1 -0.5624 -7.7924 -0.5960 28 1 -2.7930 -8.6992 -0.3413 29 1 -3.4700 -7.0896 0.0081 30 1 -2.0961 -7.8005 -2.6188 31 1 -3.8548 -7.9139 -2.3706 32 1 -3.0677 -5.7241 -3.4066 33 1 -4.0140 -5.5372 -1.9077 34 1 0.8188 -4.1783 0.9750 35 1 3.1789 -2.3172 1.8715 36 1 2.5842 -3.8195 2.7612 37 1 3.1112 -5.2346 0.7231 38 1 3.7055 -3.7325 -0.1666 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334340848.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:43 Heat of formation + Delta-G solvation = 47.600989 kcal Electronic energy + Delta-G solvation = -21728.955582 eV Core-core repulsion = 18573.005604 eV Total energy + Delta-G solvation = -3155.949978 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.15655 -40.07282 -37.67699 -37.20893 -34.73917 -34.24881 -32.75082 -30.76221 -29.41151 -27.35040 -25.22369 -23.81368 -23.09092 -23.00564 -22.31379 -20.85511 -19.79698 -18.60410 -17.77007 -17.34629 -16.91954 -16.60450 -15.94998 -15.58613 -15.21754 -15.07161 -14.88671 -14.64307 -14.51815 -14.42374 -14.02374 -13.62100 -13.02338 -12.84724 -12.79496 -12.51757 -12.21543 -12.06396 -11.99314 -11.91059 -11.80415 -11.57007 -11.41075 -10.77125 -10.57952 -10.43991 -10.01869 -9.29655 -8.91193 -8.10410 -6.01311 0.86406 1.37406 1.42282 1.52884 1.71304 1.83471 2.35445 2.94063 3.16054 3.19641 3.37435 3.57227 3.69808 3.76584 3.86630 4.14402 4.24975 4.33024 4.39216 4.46647 4.49669 4.55242 4.64665 4.77138 4.89477 4.91608 5.01498 5.02280 5.07635 5.14606 5.25596 5.36295 5.39484 5.45685 5.50456 5.79566 6.20247 6.34967 6.99463 7.06947 7.31284 7.71678 8.42512 8.92939 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.026461 B = 0.005658 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.909555 B = 4947.757944 C = 5745.973771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.003 3.997 3 Si 0.982 3.018 4 H -0.256 1.256 5 H -0.288 1.288 6 H -0.272 1.272 7 C -0.346 4.346 8 H 0.078 0.922 9 N -0.435 5.435 10 C 0.544 3.456 11 O -0.587 6.587 12 C -0.063 4.063 13 C 0.008 3.992 14 N -0.453 5.453 15 C 0.202 3.798 16 N -0.486 5.486 17 C -0.031 4.031 18 C -0.119 4.119 19 C -0.127 4.127 20 C 0.090 3.910 21 C 0.053 3.947 22 C -0.178 4.178 23 C -0.181 4.181 24 H 0.258 0.742 25 H 0.182 0.818 26 H 0.098 0.902 27 H 0.103 0.897 28 H 0.112 0.888 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.121 0.879 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.147 0.853 35 H 0.081 0.919 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.502 -19.461 -0.894 20.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.202 4.202 3 Si 0.806 3.194 4 H -0.180 1.180 5 H -0.215 1.215 6 H -0.197 1.197 7 C -0.474 4.474 8 H 0.096 0.904 9 N -0.154 5.154 10 C 0.334 3.666 11 O -0.469 6.469 12 C -0.192 4.192 13 C -0.131 4.131 14 N -0.136 5.136 15 C -0.062 4.062 16 N -0.207 5.207 17 C -0.070 4.070 18 C -0.157 4.157 19 C -0.164 4.164 20 C -0.030 4.030 21 C -0.052 4.052 22 C -0.216 4.216 23 C -0.220 4.220 24 H 0.068 0.932 25 H 0.199 0.801 26 H 0.117 0.883 27 H 0.121 0.879 28 H 0.131 0.869 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.139 0.861 32 H 0.120 0.880 33 H 0.114 0.886 34 H 0.164 0.836 35 H 0.100 0.900 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.260 -19.030 -0.712 20.381 hybrid contribution -0.149 1.803 -0.810 1.982 sum -7.409 -17.228 -1.522 18.815 Atomic orbital electron populations 1.70035 1.07982 1.27580 1.45346 1.26292 0.95871 1.02973 0.95071 0.85073 0.78978 0.77985 0.77366 1.17985 1.21463 1.19739 1.19270 0.91257 0.83847 1.53045 0.90443 1.42795 1.33754 1.10448 1.28362 1.17244 0.82964 0.84800 0.81625 1.90520 1.70716 1.42129 1.43554 1.20971 1.00942 0.95209 1.02053 1.22418 0.98365 0.88523 1.03745 1.45603 1.26076 1.10977 1.30966 1.24598 0.90129 0.98994 0.92502 1.70239 1.24512 1.00716 1.25219 1.20481 1.00098 0.84668 1.01742 1.21697 0.94546 1.03804 0.95657 1.21932 1.05342 0.91776 0.97385 1.22478 0.86692 0.94270 0.99527 1.22621 0.93849 0.92232 0.96478 1.23154 1.03606 1.01064 0.93752 1.23125 0.99698 0.99153 1.00038 0.93227 0.80107 0.88345 0.87866 0.86919 0.91483 0.90676 0.86062 0.87990 0.88594 0.83591 0.90021 0.86744 0.86716 0.91526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -57.26 11.13 21.67 0.24 -57.02 16 2 C 0.00 0.16 4.75 84.94 0.40 0.57 16 3 Si 0.98 48.08 29.56 68.60 2.03 50.11 16 4 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 5 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 6 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 7 C -0.35 -21.16 7.93 84.07 0.67 -20.49 16 8 H 0.08 4.56 7.20 -2.91 -0.02 4.54 16 9 N -0.44 -25.54 2.85 -617.01 -1.76 -27.30 16 10 C 0.54 32.96 6.76 86.61 0.59 33.55 16 11 O -0.59 -39.68 14.58 -4.21 -0.06 -39.74 16 12 C -0.06 -3.14 6.73 40.52 0.27 -2.87 16 13 C 0.01 0.33 11.36 83.77 0.95 1.28 16 14 N -0.45 -13.43 3.13 -512.20 -1.60 -15.04 16 15 C 0.20 6.31 7.65 138.05 1.06 7.37 16 16 N -0.49 -20.38 7.68 -176.08 -1.35 -21.73 16 17 C -0.03 -0.57 6.33 30.11 0.19 -0.38 16 18 C -0.12 -1.30 5.95 30.77 0.18 -1.12 16 19 C -0.13 -1.27 5.93 30.72 0.18 -1.09 16 20 C 0.09 1.51 6.96 86.45 0.60 2.11 16 21 C 0.05 2.56 5.47 44.99 0.25 2.81 16 22 C -0.18 -7.33 9.80 30.59 0.30 -7.03 16 23 C -0.18 -7.29 10.37 30.59 0.32 -6.98 16 24 H 0.26 16.15 8.32 -92.71 -0.77 15.38 16 25 H 0.18 7.03 8.06 -2.91 -0.02 7.01 16 26 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 27 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.07 0.82 8.12 -2.39 -0.02 0.80 16 30 H 0.07 0.82 8.11 -2.38 -0.02 0.80 16 31 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.15 6.93 5.24 -2.39 -0.01 6.91 16 35 H 0.08 3.67 6.72 -2.38 -0.02 3.65 16 36 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 37 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 38 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 Total: -1.00 -87.30 311.31 4.51 -82.79 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 1.06 Total: 20.22 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: 5.96 Total: 7.72 kcal Atomic # 7 Polarization: -116.62 SS G_CDS: -4.47 Total: -121.09 kcal Atomic # 8 Polarization: -39.68 SS G_CDS: -0.06 Total: -39.74 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 2.03 Total: 50.11 kcal Total: -87.30 4.51 -82.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334340848.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.393 kcal (2) G-P(sol) polarization free energy of solvation -87.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds