Wall clock time and date at job start Mon Mar 30 2020 01:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99873 * 2 1 4 4 H 1.48502 * 109.47094 * 269.99459 * 3 2 1 5 5 H 1.48504 * 109.47339 * 29.99699 * 3 2 1 6 6 H 1.48504 * 109.47181 * 149.99914 * 3 2 1 7 7 C 1.37876 * 119.99753 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00467 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99523 * 180.02562 * 7 2 1 10 10 N 1.46503 * 109.47080 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00059 * 179.97438 * 10 9 7 12 12 O 1.21594 * 120.00005 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99992 * 179.97438 * 11 10 9 14 14 C 1.40196 * 119.99959 * 184.62082 * 13 11 10 15 15 C 1.38860 * 119.99654 * 324.91747 * 14 13 11 16 16 C 1.37976 * 119.83815 * 180.02562 * 15 14 13 17 17 C 1.39067 * 120.12744 * 359.94205 * 16 15 14 18 18 C 1.38600 * 120.13744 * 359.95527 * 17 16 15 19 19 C 1.38475 * 119.62611 * 359.86948 * 18 17 16 20 20 C 1.50605 * 121.49851 * 180.24054 * 18 17 16 21 21 C 1.52849 * 110.50872 * 339.33303 * 20 18 17 22 22 C 1.53426 * 108.84637 * 51.42347 * 21 20 18 23 23 N 1.40186 * 119.06520 * 179.79099 * 17 16 15 24 24 H 0.96998 * 120.00123 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47577 * 60.00103 * 9 7 2 26 26 H 1.08998 * 109.47509 * 300.00332 * 9 7 2 27 27 H 0.97001 * 119.99794 * 0.02562 * 10 9 7 28 28 H 0.96999 * 119.99514 * 4.35927 * 13 11 10 29 29 H 1.07999 * 120.08053 * 0.07988 * 15 14 13 30 30 H 1.08001 * 119.94028 * 179.97438 * 16 15 14 31 31 H 1.07994 * 119.87272 * 180.13700 * 19 18 17 32 32 H 1.09003 * 109.26623 * 219.06901 * 20 18 17 33 33 H 1.08992 * 109.23812 * 99.58104 * 20 18 17 34 34 H 1.09002 * 109.57588 * 291.61882 * 21 20 18 35 35 H 1.08998 * 109.68003 * 171.29645 * 21 20 18 36 36 H 1.08992 * 109.80088 * 177.17416 * 22 21 20 37 37 H 1.09004 * 109.79922 * 56.31488 * 22 21 20 38 38 H 0.96999 * 120.54599 * 346.77391 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 3.9999 -2.5752 0.0022 11 6 5.3250 -2.8215 0.0024 12 8 6.1151 -1.8973 0.0021 13 7 5.7743 -4.0922 0.0039 14 6 7.1489 -4.3495 0.1019 15 6 8.0604 -3.4922 -0.5002 16 6 9.4125 -3.7489 -0.4021 17 6 9.8625 -4.8625 0.2987 18 6 8.9548 -5.7185 0.9023 19 6 7.5985 -5.4567 0.8056 20 6 9.4085 -6.9302 1.6731 21 6 10.8256 -7.3275 1.2607 22 6 11.7323 -6.0931 1.3500 23 7 11.2409 -5.1044 0.3805 24 1 -0.4850 0.8400 -0.0004 25 1 3.8746 -0.6800 0.8911 26 1 3.8752 -0.6803 -0.8888 27 1 3.3696 -3.3125 0.0021 28 1 5.1462 -4.8287 -0.0589 29 1 7.7117 -2.6261 -1.0431 30 1 10.1228 -3.0834 -0.8701 31 1 6.8878 -6.1198 1.2762 32 1 8.7297 -7.7591 1.4724 33 1 9.3942 -6.7037 2.7392 34 1 10.8168 -7.7009 0.2367 35 1 11.1984 -8.1036 1.9292 36 1 12.7581 -6.3700 1.1072 37 1 11.6901 -5.6759 2.3562 38 1 11.8602 -4.6267 -0.1932 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334863182.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:11 Heat of formation + Delta-G solvation = -4.228406 kcal Electronic energy + Delta-G solvation = -20290.602502 eV Core-core repulsion = 17132.405033 eV Total energy + Delta-G solvation = -3158.197469 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.38730 -39.24899 -36.59387 -34.29341 -33.91368 -33.25290 -32.30431 -30.02872 -29.01951 -27.46010 -24.75570 -23.39911 -22.54883 -22.00723 -20.58493 -19.48707 -18.31320 -17.35971 -16.97396 -16.43352 -15.99370 -15.06727 -14.82897 -14.61677 -14.23818 -14.06438 -13.90986 -13.62135 -13.36341 -13.15537 -13.03576 -12.71729 -12.41450 -12.24320 -11.89115 -11.32853 -11.11813 -10.98241 -10.82230 -10.77630 -10.45439 -9.95287 -9.56001 -9.44796 -8.99981 -8.76673 -8.58672 -8.14116 -7.01483 -6.20319 -4.22458 1.51620 1.68736 3.18545 3.28964 3.36004 3.41190 3.44547 3.64954 4.05630 4.34994 4.54451 4.66391 4.75702 4.87254 4.99672 5.15262 5.17065 5.24980 5.40325 5.50009 5.51912 5.58853 5.71907 5.84903 5.93864 6.13457 6.20249 6.39210 6.57470 6.75188 6.80477 7.10801 7.11567 7.22925 7.37315 7.40106 7.56395 7.69789 8.27608 8.64772 8.79930 9.14654 9.40350 10.91621 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.046001 B = 0.003181 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.540575 B = 8798.814646 C = 9216.381155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.543 4.543 8 H 0.079 0.921 9 C 0.238 3.762 10 N -0.718 5.718 11 C 0.693 3.307 12 O -0.589 6.589 13 N -0.693 5.693 14 C 0.128 3.872 15 C -0.078 4.078 16 C -0.170 4.170 17 C 0.192 3.808 18 C -0.139 4.139 19 C -0.110 4.110 20 C -0.069 4.069 21 C -0.137 4.137 22 C 0.125 3.875 23 N -0.758 5.758 24 H 0.268 0.732 25 H 0.025 0.975 26 H 0.020 0.980 27 H 0.394 0.606 28 H 0.402 0.598 29 H 0.142 0.858 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.055 0.945 38 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.471 -15.530 1.535 26.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.581 4.581 8 H 0.097 0.903 9 C 0.115 3.885 10 N -0.370 5.370 11 C 0.393 3.607 12 O -0.468 6.468 13 N -0.341 5.341 14 C 0.032 3.968 15 C -0.098 4.098 16 C -0.193 4.193 17 C 0.091 3.909 18 C -0.144 4.144 19 C -0.132 4.132 20 C -0.106 4.106 21 C -0.176 4.176 22 C 0.000 4.000 23 N -0.392 5.392 24 H 0.077 0.923 25 H 0.042 0.958 26 H 0.038 0.962 27 H 0.227 0.773 28 H 0.236 0.764 29 H 0.160 0.840 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.073 0.927 38 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 21.942 -14.611 1.688 26.415 hybrid contribution -0.172 0.409 -0.223 0.496 sum 21.769 -14.202 1.466 26.034 Atomic orbital electron populations 1.69881 1.06214 1.27435 1.49496 1.24780 0.94792 0.99173 0.93870 0.86811 0.80622 0.83167 0.79068 1.19831 1.20930 1.18398 1.21083 0.88500 0.95231 1.53279 0.90258 1.19399 0.94893 0.77390 0.96791 1.45423 1.03481 1.11302 1.76774 1.16127 0.83743 0.82441 0.78360 1.90851 1.54925 1.42973 1.58011 1.42653 1.05793 1.07410 1.78257 1.17278 0.82608 0.97197 0.99736 1.21161 0.91563 0.99440 0.97681 1.20572 0.95737 0.97538 1.05448 1.17514 0.83719 0.93148 0.96568 1.18955 0.91974 0.97963 1.05459 1.20552 0.94695 0.98656 0.99277 1.20245 0.96150 0.95177 0.99007 1.21869 0.95770 0.97574 1.02347 1.21451 0.97078 0.88725 0.92709 1.44594 1.03725 1.46917 1.43937 0.92258 0.95752 0.96201 0.77299 0.76372 0.84005 0.86224 0.86082 0.90872 0.91218 0.91306 0.90806 0.90709 0.92682 0.76682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.59 13.96 55.43 0.77 -25.82 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 3 Si 0.88 21.58 27.47 -169.99 -4.67 16.91 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 7 C -0.54 -14.96 9.83 -34.44 -0.34 -15.29 16 8 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 9 C 0.24 5.92 4.50 -5.19 -0.02 5.89 16 10 N -0.72 -14.82 5.55 -66.41 -0.37 -15.19 16 11 C 0.69 13.90 8.41 -86.91 -0.73 13.17 16 12 O -0.59 -13.86 13.78 5.28 0.07 -13.79 16 13 N -0.69 -10.74 5.35 -14.21 -0.08 -10.82 16 14 C 0.13 1.96 6.30 -83.64 -0.53 1.43 16 15 C -0.08 -1.24 8.70 -39.45 -0.34 -1.59 16 16 C -0.17 -2.30 9.87 -39.37 -0.39 -2.69 16 17 C 0.19 2.34 6.48 -83.59 -0.54 1.80 16 18 C -0.14 -1.65 5.76 -104.45 -0.60 -2.25 16 19 C -0.11 -1.41 9.58 -39.33 -0.38 -1.79 16 20 C -0.07 -0.60 5.77 -28.01 -0.16 -0.77 16 21 C -0.14 -0.97 6.11 -26.59 -0.16 -1.14 16 22 C 0.13 0.90 7.11 -3.59 -0.03 0.88 16 23 N -0.76 -7.01 5.81 -58.02 -0.34 -7.35 16 24 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.02 0.64 7.20 -51.93 -0.37 0.27 16 26 H 0.02 0.52 7.57 -51.93 -0.39 0.12 16 27 H 0.39 7.06 8.34 -40.82 -0.34 6.72 16 28 H 0.40 4.83 8.84 -40.82 -0.36 4.47 16 29 H 0.14 2.58 6.22 -52.49 -0.33 2.26 16 30 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 31 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.40 3.00 8.86 -40.82 -0.36 2.63 16 LS Contribution 314.68 15.07 4.74 4.74 Total: -1.00 -33.31 314.68 -9.30 -42.60 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -5.12 Total: 8.95 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: -4.32 Total: -0.23 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: -0.01 Total: -59.18 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: 0.07 Total: -13.79 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.31 -9.30 -42.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334863182.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.374 kcal (2) G-P(sol) polarization free energy of solvation -33.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds