Wall clock time and date at job start Mon Mar 30 2020 01:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99873 * 2 1 4 4 H 1.48502 * 109.47094 * 269.99459 * 3 2 1 5 5 H 1.48504 * 109.47339 * 29.99699 * 3 2 1 6 6 H 1.48504 * 109.47181 * 149.99914 * 3 2 1 7 7 C 1.37876 * 119.99753 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00467 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99523 * 180.02562 * 7 2 1 10 10 N 1.46503 * 109.47080 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00059 * 179.97438 * 10 9 7 12 12 O 1.21594 * 120.00005 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99992 * 179.97438 * 11 10 9 14 14 C 1.40196 * 119.99959 * 184.62082 * 13 11 10 15 15 C 1.38860 * 119.99654 * 324.91747 * 14 13 11 16 16 C 1.37976 * 119.83815 * 180.02562 * 15 14 13 17 17 C 1.39067 * 120.12744 * 359.94205 * 16 15 14 18 18 C 1.38600 * 120.13744 * 359.95527 * 17 16 15 19 19 C 1.38475 * 119.62611 * 359.86948 * 18 17 16 20 20 C 1.50605 * 121.49851 * 180.24054 * 18 17 16 21 21 C 1.52849 * 110.50872 * 339.33303 * 20 18 17 22 22 C 1.53426 * 108.84637 * 51.42347 * 21 20 18 23 23 N 1.40186 * 119.06520 * 179.79099 * 17 16 15 24 24 H 0.96998 * 120.00123 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47577 * 60.00103 * 9 7 2 26 26 H 1.08998 * 109.47509 * 300.00332 * 9 7 2 27 27 H 0.97001 * 119.99794 * 0.02562 * 10 9 7 28 28 H 0.96999 * 119.99514 * 4.35927 * 13 11 10 29 29 H 1.07999 * 120.08053 * 0.07988 * 15 14 13 30 30 H 1.08001 * 119.94028 * 179.97438 * 16 15 14 31 31 H 1.07994 * 119.87272 * 180.13700 * 19 18 17 32 32 H 1.09003 * 109.26623 * 219.06901 * 20 18 17 33 33 H 1.08992 * 109.23812 * 99.58104 * 20 18 17 34 34 H 1.09002 * 109.57588 * 291.61882 * 21 20 18 35 35 H 1.08998 * 109.68003 * 171.29645 * 21 20 18 36 36 H 1.08992 * 109.80088 * 177.17416 * 22 21 20 37 37 H 1.09004 * 109.79922 * 56.31488 * 22 21 20 38 38 H 0.96999 * 120.54599 * 346.77391 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 3.9999 -2.5752 0.0022 11 6 5.3250 -2.8215 0.0024 12 8 6.1151 -1.8973 0.0021 13 7 5.7743 -4.0922 0.0039 14 6 7.1489 -4.3495 0.1019 15 6 8.0604 -3.4922 -0.5002 16 6 9.4125 -3.7489 -0.4021 17 6 9.8625 -4.8625 0.2987 18 6 8.9548 -5.7185 0.9023 19 6 7.5985 -5.4567 0.8056 20 6 9.4085 -6.9302 1.6731 21 6 10.8256 -7.3275 1.2607 22 6 11.7323 -6.0931 1.3500 23 7 11.2409 -5.1044 0.3805 24 1 -0.4850 0.8400 -0.0004 25 1 3.8746 -0.6800 0.8911 26 1 3.8752 -0.6803 -0.8888 27 1 3.3696 -3.3125 0.0021 28 1 5.1462 -4.8287 -0.0589 29 1 7.7117 -2.6261 -1.0431 30 1 10.1228 -3.0834 -0.8701 31 1 6.8878 -6.1198 1.2762 32 1 8.7297 -7.7591 1.4724 33 1 9.3942 -6.7037 2.7392 34 1 10.8168 -7.7009 0.2367 35 1 11.1984 -8.1036 1.9292 36 1 12.7581 -6.3700 1.1072 37 1 11.6901 -5.6759 2.3562 38 1 11.8602 -4.6267 -0.1932 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334863182.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:10 Heat of formation + Delta-G solvation = -28.432554 kcal Electronic energy + Delta-G solvation = -20291.652073 eV Core-core repulsion = 17132.405033 eV Total energy + Delta-G solvation = -3159.247040 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.61345 -40.45625 -37.67142 -36.11262 -35.14748 -34.34743 -34.08649 -30.98024 -30.38231 -29.04716 -25.58315 -24.67829 -23.75934 -23.33099 -22.08819 -20.56541 -19.86770 -18.50479 -18.23791 -18.02323 -17.05880 -16.58480 -16.37620 -15.95905 -15.56470 -15.07499 -15.03290 -14.78838 -14.50863 -14.35201 -14.29381 -14.09054 -13.83116 -13.66123 -13.06240 -12.82100 -12.68833 -12.12448 -11.92640 -11.85907 -11.65406 -11.59565 -11.48398 -11.09703 -10.91476 -10.21062 -9.82103 -9.60510 -8.39660 -7.98892 -6.46526 0.49067 0.60379 1.33920 1.35745 1.49292 1.78169 2.14310 2.29144 2.66605 2.94510 2.96895 3.41136 3.85249 3.96253 4.13086 4.18375 4.43697 4.47840 4.54340 4.62461 4.75427 4.82471 4.91741 4.99959 5.04323 5.06410 5.11572 5.23621 5.28466 5.36841 5.40606 5.50271 5.56597 5.70145 5.99183 6.03647 6.27647 6.49263 6.55535 6.96402 7.11557 7.22552 7.60370 8.75060 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.046001 B = 0.003181 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.540575 B = 8798.814646 C = 9216.381155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.027 3.973 3 Si 0.937 3.063 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.252 3.748 10 N -0.716 5.716 11 C 0.693 3.307 12 O -0.626 6.626 13 N -0.672 5.672 14 C 0.096 3.904 15 C -0.102 4.102 16 C -0.181 4.181 17 C 0.194 3.806 18 C -0.144 4.144 19 C -0.102 4.102 20 C -0.071 4.071 21 C -0.134 4.134 22 C 0.118 3.882 23 N -0.753 5.753 24 H 0.273 0.727 25 H 0.011 0.989 26 H 0.011 0.989 27 H 0.407 0.593 28 H 0.419 0.581 29 H 0.111 0.889 30 H 0.131 0.869 31 H 0.145 0.855 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.054 0.946 38 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.767 -17.225 2.350 29.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.173 4.173 3 Si 0.761 3.239 4 H -0.189 1.189 5 H -0.198 1.198 6 H -0.185 1.185 7 C -0.584 4.584 8 H 0.079 0.921 9 C 0.127 3.873 10 N -0.370 5.370 11 C 0.393 3.607 12 O -0.508 6.508 13 N -0.322 5.322 14 C 0.000 4.000 15 C -0.123 4.123 16 C -0.203 4.203 17 C 0.091 3.909 18 C -0.149 4.149 19 C -0.123 4.123 20 C -0.108 4.108 21 C -0.172 4.172 22 C -0.006 4.006 23 N -0.386 5.386 24 H 0.082 0.918 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.242 0.758 28 H 0.257 0.743 29 H 0.129 0.871 30 H 0.149 0.851 31 H 0.163 0.837 32 H 0.105 0.895 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.073 0.927 38 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 24.275 -16.386 2.502 29.395 hybrid contribution -0.761 0.789 -0.456 1.188 sum 23.514 -15.596 2.046 28.290 Atomic orbital electron populations 1.69977 1.07648 1.28639 1.50699 1.25568 0.95539 1.02616 0.93572 0.85860 0.79240 0.79321 0.79487 1.18936 1.19756 1.18541 1.21262 0.89787 0.94662 1.52650 0.92148 1.18981 0.93107 0.79513 0.95658 1.45110 1.04258 1.10207 1.77400 1.16205 0.82954 0.83515 0.77998 1.90830 1.55693 1.44686 1.59547 1.42335 1.06602 1.06149 1.77077 1.17484 0.81931 0.98679 1.01857 1.21026 0.93098 0.99205 0.98946 1.20672 0.94957 0.98564 1.06142 1.17662 0.85367 0.92394 0.95446 1.19419 0.91584 0.98851 1.05023 1.20797 0.95745 0.97636 0.98106 1.20358 0.97602 0.94021 0.98785 1.21877 0.94594 0.98048 1.02670 1.21701 0.98594 0.88170 0.92095 1.44761 1.02614 1.47078 1.44107 0.91805 0.97087 0.97081 0.75779 0.74339 0.87150 0.85131 0.83711 0.89528 0.90526 0.91813 0.88214 0.87937 0.92748 0.75752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.97 13.96 21.45 0.30 -55.67 16 2 C 0.03 1.57 5.47 84.65 0.46 2.03 16 3 Si 0.94 44.69 27.47 68.60 1.88 46.57 16 4 H -0.26 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 6 H -0.26 -12.43 6.54 99.48 0.65 -11.78 16 7 C -0.55 -30.50 9.83 25.60 0.25 -30.25 16 8 H 0.06 3.53 7.84 -2.91 -0.02 3.50 16 9 C 0.25 12.68 4.50 85.63 0.38 13.06 16 10 N -0.72 -29.89 5.55 -482.28 -2.68 -32.57 16 11 C 0.69 28.23 8.41 179.05 1.51 29.73 16 12 O -0.63 -30.39 13.78 -4.01 -0.06 -30.45 16 13 N -0.67 -20.76 5.35 -317.12 -1.70 -22.45 16 14 C 0.10 2.92 6.30 38.06 0.24 3.16 16 15 C -0.10 -3.37 8.70 22.36 0.19 -3.17 16 16 C -0.18 -4.86 9.87 22.41 0.22 -4.64 16 17 C 0.19 4.43 6.48 38.09 0.25 4.68 16 18 C -0.14 -3.10 5.76 -19.75 -0.11 -3.22 16 19 C -0.10 -2.43 9.58 22.43 0.21 -2.21 16 20 C -0.07 -1.00 5.77 29.77 0.17 -0.83 16 21 C -0.13 -1.38 6.11 30.69 0.19 -1.19 16 22 C 0.12 1.28 7.11 86.44 0.61 1.89 16 23 N -0.75 -12.01 5.81 -337.47 -1.96 -13.97 16 24 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 25 H 0.01 0.60 7.20 -2.39 -0.02 0.58 16 26 H 0.01 0.59 7.57 -2.39 -0.02 0.57 16 27 H 0.41 14.62 8.34 -92.71 -0.77 13.85 16 28 H 0.42 9.69 8.84 -92.71 -0.82 8.87 16 29 H 0.11 4.31 6.22 -2.91 -0.02 4.29 16 30 H 0.13 3.04 8.06 -2.91 -0.02 3.02 16 31 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 32 H 0.09 1.02 8.12 -2.39 -0.02 1.00 16 33 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 35 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.05 0.63 8.14 -2.38 -0.02 0.62 16 38 H 0.41 5.16 8.86 -92.71 -0.82 4.34 16 Total: -1.00 -72.88 314.68 -0.98 -73.86 By element: Atomic # 1 Polarization: 26.99 SS G_CDS: -1.36 Total: 25.63 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: 4.58 Total: 9.05 kcal Atomic # 7 Polarization: -118.63 SS G_CDS: -6.04 Total: -124.67 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -0.06 Total: -30.45 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.88 Total: 46.57 kcal Total: -72.88 -0.98 -73.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334863182.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.429 kcal (2) G-P(sol) polarization free energy of solvation -72.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds