Wall clock time and date at job start Mon Mar 30 2020 01:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99872 * 179.97438 * 10 9 7 12 12 O 1.21590 * 120.00297 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99768 * 180.02562 * 11 10 9 14 14 C 1.47018 * 125.65064 * 0.02562 * 13 11 10 15 15 C 1.54321 * 107.27121 * 181.02105 * 14 13 11 16 16 C 1.55157 * 102.94399 * 22.19422 * 15 14 13 17 17 H 1.09001 * 111.00540 * 82.56904 * 16 15 14 18 18 C 1.50697 * 111.00630 * 206.38703 * 16 15 14 19 19 C 1.38679 * 120.41599 * 239.71856 * 18 16 15 20 20 C 1.38626 * 118.41959 * 179.77710 * 19 18 16 21 21 C 1.38223 * 119.16080 * 0.52162 * 20 19 18 22 22 N 1.31858 * 120.76274 * 359.71835 * 21 20 19 23 23 C 1.31881 * 121.72603 * 0.02562 * 22 21 20 24 24 C 1.47422 * 125.64322 * 179.71473 * 13 11 10 25 25 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 27 27 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 28 28 H 0.97000 * 120.00420 * 0.02562 * 10 9 7 29 29 H 1.08998 * 109.88426 * 300.44205 * 14 13 11 30 30 H 1.09004 * 109.88229 * 61.44982 * 14 13 11 31 31 H 1.09001 * 110.72042 * 140.55653 * 15 14 13 32 32 H 1.09001 * 110.72093 * 263.65207 * 15 14 13 33 33 H 1.07996 * 120.79009 * 0.02675 * 19 18 16 34 34 H 1.07997 * 120.41896 * 180.21768 * 20 19 18 35 35 H 1.07997 * 119.62223 * 179.70228 * 21 20 19 36 36 H 1.08004 * 119.61803 * 179.97438 * 23 22 21 37 37 H 1.08996 * 110.37403 * 274.74705 * 24 13 11 38 38 H 1.08999 * 110.37045 * 37.07813 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0011 12 8 0.5582 -5.1056 0.0011 13 7 2.6295 -5.9078 0.0016 14 6 4.0943 -5.7828 0.0022 15 6 4.6761 -7.2119 -0.0236 16 6 3.5097 -8.0515 -0.6084 17 1 3.4944 -7.9941 -1.6968 18 6 3.5908 -9.4838 -0.1470 19 6 3.7101 -10.5128 -1.0690 20 6 3.7861 -11.8146 -0.5987 21 6 3.7297 -12.0430 0.7634 22 7 3.6109 -11.0400 1.6111 23 6 3.5410 -9.7889 1.1997 24 6 2.2771 -7.3393 0.0081 25 1 -0.4850 0.8401 0.0004 26 1 0.6239 -2.5567 0.8903 27 1 0.6246 -2.5571 -0.8897 28 1 3.1566 -3.4355 0.0009 29 1 4.4199 -5.2340 -0.8815 30 1 4.4216 -5.2630 0.9027 31 1 5.5500 -7.2609 -0.6733 32 1 4.9270 -7.5444 0.9837 33 1 3.7471 -10.3046 -2.1281 34 1 3.8830 -12.6403 -1.2880 35 1 3.7834 -13.0546 1.1377 36 1 3.4436 -8.9936 1.9239 37 1 2.1081 -7.6838 1.0283 38 1 1.3926 -7.5152 -0.6040 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335460973.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:43 Heat of formation + Delta-G solvation = 3.644787 kcal Electronic energy + Delta-G solvation = -20308.391759 eV Core-core repulsion = 17150.535697 eV Total energy + Delta-G solvation = -3157.856062 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.74157 -39.50788 -37.34329 -34.14668 -33.51163 -32.41066 -32.05431 -30.18796 -28.63031 -26.97615 -24.37688 -23.80903 -22.89880 -22.11661 -20.61183 -19.33508 -18.06215 -17.50867 -16.79312 -16.03038 -15.92409 -15.31820 -14.96326 -14.58801 -14.27945 -14.19497 -13.74897 -13.57167 -13.33744 -13.04178 -12.80025 -12.65185 -12.29739 -11.93265 -11.77669 -11.61537 -11.35140 -10.98434 -10.95357 -10.86137 -10.29074 -10.06195 -9.69339 -9.42958 -9.37647 -9.18501 -8.71827 -8.39874 -7.72552 -6.14152 -4.20860 0.79951 0.99431 3.12649 3.26441 3.31418 3.33336 3.49352 3.89028 4.12680 4.31865 4.36083 4.43465 4.47288 4.62903 4.68801 4.79793 4.91983 4.98638 5.15152 5.21762 5.23098 5.29756 5.50034 5.57890 5.66316 5.77369 5.80960 5.87670 5.92280 6.09388 6.39841 6.48819 7.19332 7.51825 7.58191 7.58471 7.70386 7.89157 8.03798 8.76638 8.91182 9.32930 9.48686 10.96106 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.049216 B = 0.003003 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.780725 B = 9322.474373 C = 9548.824640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.542 4.542 8 H 0.061 0.939 9 C 0.267 3.733 10 N -0.726 5.726 11 C 0.711 3.289 12 O -0.597 6.597 13 N -0.646 5.646 14 C 0.101 3.899 15 C -0.119 4.119 16 C -0.061 4.061 17 H 0.096 0.904 18 C -0.118 4.118 19 C -0.070 4.070 20 C -0.172 4.172 21 C 0.091 3.909 22 N -0.483 5.483 23 C 0.105 3.895 24 C 0.136 3.864 25 H 0.266 0.734 26 H 0.025 0.975 27 H 0.025 0.975 28 H 0.386 0.614 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.154 0.846 36 H 0.156 0.844 37 H 0.064 0.936 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.344 -21.268 -1.893 24.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.378 5.378 11 C 0.413 3.587 12 O -0.475 6.475 13 N -0.387 5.387 14 C -0.023 4.023 15 C -0.157 4.157 16 C -0.081 4.081 17 H 0.114 0.886 18 C -0.121 4.121 19 C -0.096 4.096 20 C -0.191 4.191 21 C -0.066 4.066 22 N -0.191 5.191 23 C -0.052 4.052 24 C 0.012 3.988 25 H 0.076 0.924 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.219 0.781 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.153 0.847 34 H 0.152 0.848 35 H 0.171 0.829 36 H 0.173 0.827 37 H 0.082 0.918 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 11.147 -21.334 -0.989 24.091 hybrid contribution 0.962 1.155 -0.970 1.789 sum 12.109 -20.178 -1.959 23.614 Atomic orbital electron populations 1.69969 1.06093 1.27385 1.48829 1.24943 0.94915 0.99380 0.94766 0.86470 0.79401 0.82328 0.78652 1.20099 1.21069 1.20076 1.21177 0.93197 0.90423 1.53263 0.92040 1.18995 0.87782 0.81004 0.97640 1.45730 1.10864 1.04167 1.77001 1.15689 0.84199 0.80423 0.78405 1.90883 1.13749 1.83812 1.59105 1.47596 1.05392 1.05249 1.80440 1.21933 0.81226 0.97222 1.01903 1.22715 0.97350 0.93626 1.02038 1.21344 0.96118 0.89580 1.01072 0.88558 1.20639 1.01078 0.95524 0.94835 1.21535 0.95746 0.92220 1.00141 1.22143 1.02074 0.97615 0.97306 1.22788 0.95511 0.98423 0.89884 1.67729 1.11582 1.00086 1.39677 1.22702 0.94862 0.93739 0.93865 1.22036 0.96675 0.79626 1.00446 0.92393 0.95698 0.95726 0.78121 0.91545 0.91448 0.89837 0.90287 0.84724 0.84788 0.82876 0.82658 0.91819 0.90310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.54 -14.89 9.28 -34.44 -0.32 -15.21 16 8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 9 C 0.27 7.27 5.43 -5.19 -0.03 7.24 16 10 N -0.73 -16.05 5.51 -66.41 -0.37 -16.41 16 11 C 0.71 15.33 8.49 -86.91 -0.74 14.59 16 12 O -0.60 -15.46 16.60 5.29 0.09 -15.37 16 13 N -0.65 -10.19 3.32 -176.10 -0.59 -10.78 16 14 C 0.10 1.15 6.15 -3.07 -0.02 1.13 16 15 C -0.12 -1.00 6.36 -24.90 -0.16 -1.16 16 16 C -0.06 -0.57 3.29 -89.50 -0.29 -0.86 16 17 H 0.10 0.83 8.01 -51.93 -0.42 0.42 16 18 C -0.12 -1.06 5.01 -104.48 -0.52 -1.58 16 19 C -0.07 -0.54 9.83 -39.28 -0.39 -0.93 16 20 C -0.17 -1.21 10.11 -39.44 -0.40 -1.61 16 21 C 0.09 0.76 11.18 -17.55 -0.20 0.56 16 22 N -0.48 -5.21 10.36 -13.26 -0.14 -5.35 16 23 C 0.11 1.05 9.50 -17.55 -0.17 0.89 16 24 C 0.14 1.78 6.31 -2.41 -0.02 1.76 16 25 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.39 7.38 7.31 -40.82 -0.30 7.08 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.62 7.24 -51.93 -0.38 0.24 16 33 H 0.13 0.77 8.04 -52.49 -0.42 0.34 16 34 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 35 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.16 1.44 7.01 -52.48 -0.37 1.08 16 37 H 0.06 0.81 6.67 -51.93 -0.35 0.46 16 38 H 0.08 1.15 8.03 -51.93 -0.42 0.73 16 LS Contribution 321.37 15.07 4.84 4.84 Total: -1.00 -34.49 321.37 -8.92 -43.40 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -5.14 Total: 2.83 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: -3.34 Total: 6.51 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: -0.35 Total: -58.14 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: 0.09 Total: -15.37 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.49 -8.92 -43.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335460973.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.050 kcal (2) G-P(sol) polarization free energy of solvation -34.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds