Wall clock time and date at job start Mon Mar 30 2020 01:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99872 * 179.97438 * 10 9 7 12 12 O 1.21590 * 120.00297 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99768 * 180.02562 * 11 10 9 14 14 C 1.47018 * 125.65064 * 0.02562 * 13 11 10 15 15 C 1.54321 * 107.27121 * 181.02105 * 14 13 11 16 16 C 1.55157 * 102.94399 * 22.19422 * 15 14 13 17 17 H 1.09001 * 111.00540 * 82.56904 * 16 15 14 18 18 C 1.50697 * 111.00630 * 206.38703 * 16 15 14 19 19 C 1.38679 * 120.41599 * 239.71856 * 18 16 15 20 20 C 1.38626 * 118.41959 * 179.77710 * 19 18 16 21 21 C 1.38223 * 119.16080 * 0.52162 * 20 19 18 22 22 N 1.31858 * 120.76274 * 359.71835 * 21 20 19 23 23 C 1.31881 * 121.72603 * 0.02562 * 22 21 20 24 24 C 1.47422 * 125.64322 * 179.71473 * 13 11 10 25 25 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 27 27 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 28 28 H 0.97000 * 120.00420 * 0.02562 * 10 9 7 29 29 H 1.08998 * 109.88426 * 300.44205 * 14 13 11 30 30 H 1.09004 * 109.88229 * 61.44982 * 14 13 11 31 31 H 1.09001 * 110.72042 * 140.55653 * 15 14 13 32 32 H 1.09001 * 110.72093 * 263.65207 * 15 14 13 33 33 H 1.07996 * 120.79009 * 0.02675 * 19 18 16 34 34 H 1.07997 * 120.41896 * 180.21768 * 20 19 18 35 35 H 1.07997 * 119.62223 * 179.70228 * 21 20 19 36 36 H 1.08004 * 119.61803 * 179.97438 * 23 22 21 37 37 H 1.08996 * 110.37403 * 274.74705 * 24 13 11 38 38 H 1.08999 * 110.37045 * 37.07813 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0011 12 8 0.5582 -5.1056 0.0011 13 7 2.6295 -5.9078 0.0016 14 6 4.0943 -5.7828 0.0022 15 6 4.6761 -7.2119 -0.0236 16 6 3.5097 -8.0515 -0.6084 17 1 3.4944 -7.9941 -1.6968 18 6 3.5908 -9.4838 -0.1470 19 6 3.7101 -10.5128 -1.0690 20 6 3.7861 -11.8146 -0.5987 21 6 3.7297 -12.0430 0.7634 22 7 3.6109 -11.0400 1.6111 23 6 3.5410 -9.7889 1.1997 24 6 2.2771 -7.3393 0.0081 25 1 -0.4850 0.8401 0.0004 26 1 0.6239 -2.5567 0.8903 27 1 0.6246 -2.5571 -0.8897 28 1 3.1566 -3.4355 0.0009 29 1 4.4199 -5.2340 -0.8815 30 1 4.4216 -5.2630 0.9027 31 1 5.5500 -7.2609 -0.6733 32 1 4.9270 -7.5444 0.9837 33 1 3.7471 -10.3046 -2.1281 34 1 3.8830 -12.6403 -1.2880 35 1 3.7834 -13.0546 1.1377 36 1 3.4436 -8.9936 1.9239 37 1 2.1081 -7.6838 1.0283 38 1 1.3926 -7.5152 -0.6040 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335460973.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:42 Heat of formation + Delta-G solvation = -20.579464 kcal Electronic energy + Delta-G solvation = -20309.442201 eV Core-core repulsion = 17150.535697 eV Total energy + Delta-G solvation = -3158.906505 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.59677 -40.80300 -38.62502 -36.15963 -34.67922 -34.05864 -32.91907 -31.16612 -29.81774 -28.72990 -25.59049 -24.63036 -24.06136 -23.60137 -21.41315 -21.00114 -19.56993 -18.21173 -18.05754 -17.54944 -16.99820 -16.93163 -16.43428 -15.92416 -15.52054 -15.02406 -14.88370 -14.51901 -14.39958 -14.24212 -14.09520 -13.90356 -13.80206 -13.44236 -13.06349 -12.91408 -12.67291 -12.51445 -12.24426 -12.12272 -11.73487 -11.50554 -11.27081 -10.79636 -10.68747 -10.34872 -10.07158 -9.85353 -9.41637 -8.28308 -6.45346 0.16560 0.38443 1.43347 1.48379 1.56128 1.70982 2.17449 2.39009 2.83925 3.06435 3.24185 3.42936 3.61016 3.71499 3.78457 4.03716 4.08148 4.16431 4.24383 4.30347 4.46045 4.63877 4.67449 4.80555 4.88996 4.91062 4.98653 5.06915 5.15299 5.24568 5.25257 5.35242 5.41051 5.48411 5.70695 5.81346 5.83970 6.19326 6.65783 7.06438 7.15820 7.24712 7.66797 8.84015 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.049216 B = 0.003003 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.780725 B = 9322.474373 C = 9548.824640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.988 3.012 4 H -0.261 1.261 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.555 4.555 8 H 0.084 0.916 9 C 0.286 3.714 10 N -0.719 5.719 11 C 0.706 3.294 12 O -0.650 6.650 13 N -0.638 5.638 14 C 0.091 3.909 15 C -0.106 4.106 16 C -0.043 4.043 17 H 0.109 0.891 18 C -0.123 4.123 19 C -0.072 4.072 20 C -0.166 4.166 21 C 0.079 3.921 22 N -0.515 5.515 23 C 0.089 3.911 24 C 0.128 3.872 25 H 0.269 0.731 26 H -0.016 1.016 27 H -0.015 1.015 28 H 0.403 0.597 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.113 0.887 32 H 0.086 0.914 33 H 0.159 0.841 34 H 0.165 0.835 35 H 0.175 0.825 36 H 0.152 0.848 37 H 0.064 0.936 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.612 -22.024 -2.841 27.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.810 3.190 4 H -0.185 1.185 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.593 4.593 8 H 0.102 0.898 9 C 0.163 3.837 10 N -0.373 5.373 11 C 0.407 3.593 12 O -0.533 6.533 13 N -0.377 5.377 14 C -0.031 4.031 15 C -0.144 4.144 16 C -0.063 4.063 17 H 0.127 0.873 18 C -0.126 4.126 19 C -0.097 4.097 20 C -0.185 4.185 21 C -0.077 4.077 22 N -0.224 5.224 23 C -0.068 4.068 24 C 0.005 3.995 25 H 0.078 0.922 26 H 0.002 0.998 27 H 0.003 0.997 28 H 0.239 0.761 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.131 0.869 32 H 0.105 0.895 33 H 0.176 0.824 34 H 0.183 0.817 35 H 0.192 0.808 36 H 0.169 0.831 37 H 0.082 0.918 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 14.505 -22.151 -1.934 26.548 hybrid contribution -0.079 1.222 -0.669 1.396 sum 14.426 -20.929 -2.603 25.552 Atomic orbital electron populations 1.70142 1.08334 1.28688 1.49805 1.26090 0.95794 1.03932 0.93784 0.85172 0.77878 0.76385 0.79548 1.18523 1.21073 1.18612 1.21546 0.94270 0.90360 1.53154 0.89825 1.18423 0.88089 0.83314 0.93900 1.45298 1.10881 1.03578 1.77524 1.15859 0.84202 0.81110 0.78114 1.90835 1.16503 1.84708 1.61267 1.47538 1.06950 1.04982 1.78233 1.22301 0.78120 0.99874 1.02805 1.22720 0.97576 0.90832 1.03261 1.21205 0.94075 0.89575 1.01450 0.87265 1.20553 1.01915 0.95466 0.94652 1.21878 0.94662 0.92085 1.01123 1.22482 1.00439 0.98367 0.97203 1.23264 0.94951 0.98877 0.90606 1.67703 1.12879 1.00778 1.41054 1.22726 0.95814 0.93739 0.94493 1.22258 0.98192 0.78408 1.00661 0.92192 0.99787 0.99678 0.76105 0.90411 0.90770 0.86850 0.89532 0.82366 0.81732 0.80798 0.83092 0.91765 0.92411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.96 13.29 21.45 0.28 -56.68 16 2 C 0.00 0.20 5.46 84.66 0.46 0.67 16 3 Si 0.99 42.49 29.54 68.60 2.03 44.51 16 4 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 5 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 6 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 7 C -0.56 -30.76 9.28 25.60 0.24 -30.52 16 8 H 0.08 4.16 7.60 -2.91 -0.02 4.14 16 9 C 0.29 16.34 5.43 85.63 0.46 16.80 16 10 N -0.72 -32.63 5.51 -482.28 -2.66 -35.28 16 11 C 0.71 31.51 8.49 179.05 1.52 33.03 16 12 O -0.65 -35.71 16.60 -4.00 -0.07 -35.78 16 13 N -0.64 -20.11 3.32 -829.30 -2.76 -22.87 16 14 C 0.09 1.89 6.15 86.73 0.53 2.42 16 15 C -0.11 -1.46 6.36 31.78 0.20 -1.26 16 16 C -0.04 -0.71 3.29 -10.07 -0.03 -0.74 16 17 H 0.11 1.56 8.01 -2.39 -0.02 1.54 16 18 C -0.12 -1.96 5.01 -19.78 -0.10 -2.06 16 19 C -0.07 -0.88 9.83 22.47 0.22 -0.66 16 20 C -0.17 -1.83 10.11 22.36 0.23 -1.61 16 21 C 0.08 1.18 11.18 84.69 0.95 2.12 16 22 N -0.52 -10.69 10.36 -195.85 -2.03 -12.72 16 23 C 0.09 1.70 9.50 84.67 0.80 2.51 16 24 C 0.13 3.35 6.31 86.94 0.55 3.90 16 25 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 26 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 27 H -0.01 -0.94 8.14 -2.39 -0.02 -0.96 16 28 H 0.40 15.22 7.31 -92.71 -0.68 14.55 16 29 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.09 1.12 7.24 -2.39 -0.02 1.10 16 33 H 0.16 1.16 8.04 -2.91 -0.02 1.14 16 34 H 0.17 0.77 8.06 -2.91 -0.02 0.75 16 35 H 0.17 1.63 8.06 -2.91 -0.02 1.60 16 36 H 0.15 2.82 7.01 -2.91 -0.02 2.80 16 37 H 0.06 1.68 6.67 -2.39 -0.02 1.66 16 38 H 0.06 1.75 8.03 -2.39 -0.02 1.73 16 Total: -1.00 -79.20 321.37 1.23 -77.98 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: 0.39 Total: 16.24 kcal Atomic # 6 Polarization: 18.56 SS G_CDS: 6.03 Total: 24.60 kcal Atomic # 7 Polarization: -120.39 SS G_CDS: -7.16 Total: -127.55 kcal Atomic # 8 Polarization: -35.71 SS G_CDS: -0.07 Total: -35.78 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Total: -79.20 1.23 -77.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335460973.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.398 kcal (2) G-P(sol) polarization free energy of solvation -79.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds