Wall clock time and date at job start Mon Mar 30 2020 01:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 C 1.34780 * 120.00091 * 179.97438 * 10 9 7 12 12 O 1.21592 * 119.99882 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00305 * 179.97438 * 11 10 9 14 14 C 1.47028 * 125.64939 * 0.02940 * 13 11 10 15 15 C 1.54325 * 107.27404 * 178.90203 * 14 13 11 16 16 C 1.55159 * 102.94040 * 337.80462 * 15 14 13 17 17 H 1.08998 * 111.00516 * 277.39609 * 16 15 14 18 18 C 1.50693 * 111.00199 * 153.57684 * 16 15 14 19 19 C 1.38674 * 120.41664 * 120.00226 * 18 16 15 20 20 C 1.38632 * 118.42257 * 179.97438 * 19 18 16 21 21 C 1.38224 * 119.15673 * 0.02562 * 20 19 18 22 22 N 1.31854 * 120.77045 * 359.97438 * 21 20 19 23 23 C 1.31888 * 121.71739 * 359.70919 * 22 21 20 24 24 C 1.47428 * 125.65313 * 179.71344 * 13 11 10 25 25 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 27 27 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 28 28 H 0.97003 * 120.00560 * 359.97438 * 10 9 7 29 29 H 1.09004 * 109.87886 * 298.32002 * 14 13 11 30 30 H 1.08998 * 109.88074 * 59.32347 * 14 13 11 31 31 H 1.08992 * 110.72295 * 96.16752 * 15 14 13 32 32 H 1.09001 * 110.71904 * 219.44669 * 15 14 13 33 33 H 1.08003 * 120.78968 * 0.02661 * 19 18 16 34 34 H 1.08001 * 120.42202 * 180.02562 * 20 19 18 35 35 H 1.08001 * 119.61592 * 180.02562 * 21 20 19 36 36 H 1.08001 * 119.61431 * 180.30745 * 23 22 21 37 37 H 1.09004 * 110.36036 * 323.01400 * 24 13 11 38 38 H 1.09005 * 110.36369 * 85.32671 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 6 1.7536 -4.8834 -0.0154 12 8 0.5581 -5.1055 -0.0156 13 7 2.6293 -5.9078 -0.0204 14 6 4.0942 -5.7828 -0.0202 15 6 4.6761 -7.2120 0.0012 16 6 3.5095 -8.0534 0.5831 17 1 3.4942 -7.9999 1.6716 18 6 3.5902 -9.4840 0.1164 19 6 3.7151 -10.5159 1.0343 20 6 3.7853 -11.8165 0.5595 21 6 3.7292 -12.0398 -0.8034 22 7 3.6102 -11.0338 -1.6474 23 6 3.5345 -9.7846 -1.2311 24 6 2.2771 -7.3394 -0.0204 25 1 -0.4850 0.8401 -0.0004 26 1 0.6242 -2.5609 0.8844 27 1 0.6244 -2.5529 -0.8956 28 1 3.1566 -3.4355 -0.0097 29 1 4.4220 -5.2626 -0.9203 30 1 4.4194 -5.2344 0.8638 31 1 4.9243 -7.5425 -1.0073 32 1 5.5498 -7.2630 0.6509 33 1 3.7560 -10.3113 2.0940 34 1 3.8824 -12.6447 1.2458 35 1 3.7828 -13.0501 -1.1814 36 1 3.4324 -8.9870 -1.9521 37 1 1.3966 -7.5133 0.5982 38 1 2.1011 -7.6867 -1.0385 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335460974.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:46 Heat of formation + Delta-G solvation = -20.756969 kcal Electronic energy + Delta-G solvation = -20310.342276 eV Core-core repulsion = 17151.428074 eV Total energy + Delta-G solvation = -3158.914202 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.60427 -40.80348 -38.63566 -36.16000 -34.68264 -34.05970 -32.91931 -31.16745 -29.83030 -28.73969 -25.58895 -24.62984 -24.06386 -23.60421 -21.40908 -21.00282 -19.57350 -18.21427 -18.06171 -17.55290 -17.00074 -16.93025 -16.43205 -15.92790 -15.52217 -15.02299 -14.88293 -14.51981 -14.39936 -14.24546 -14.10443 -13.90397 -13.80824 -13.43531 -13.06316 -12.89571 -12.70926 -12.52475 -12.23583 -12.12563 -11.73035 -11.48097 -11.27039 -10.80851 -10.68831 -10.34925 -10.07192 -9.85565 -9.41663 -8.28579 -6.45420 0.16519 0.38369 1.43419 1.46743 1.57402 1.70919 2.17428 2.38847 2.83950 3.06338 3.24178 3.42799 3.61014 3.71785 3.78243 4.03819 4.08117 4.16465 4.24333 4.30386 4.46200 4.63847 4.67362 4.80613 4.88984 4.90943 4.98747 5.06873 5.15334 5.24538 5.25232 5.35089 5.40954 5.48533 5.70620 5.81283 5.83967 6.19264 6.65951 7.06337 7.15786 7.24641 7.66774 8.83979 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.049208 B = 0.003003 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.874860 B = 9321.792805 C = 9547.965670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.988 3.012 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.254 1.254 7 C -0.554 4.554 8 H 0.084 0.916 9 C 0.286 3.714 10 N -0.719 5.719 11 C 0.706 3.294 12 O -0.650 6.650 13 N -0.638 5.638 14 C 0.091 3.909 15 C -0.106 4.106 16 C -0.044 4.044 17 H 0.109 0.891 18 C -0.123 4.123 19 C -0.072 4.072 20 C -0.166 4.166 21 C 0.079 3.921 22 N -0.515 5.515 23 C 0.089 3.911 24 C 0.128 3.872 25 H 0.269 0.731 26 H -0.014 1.014 27 H -0.016 1.016 28 H 0.403 0.597 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.114 0.886 33 H 0.159 0.841 34 H 0.165 0.835 35 H 0.175 0.825 36 H 0.152 0.848 37 H 0.057 0.943 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.622 -22.054 2.789 27.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.810 3.190 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.178 1.178 7 C -0.592 4.592 8 H 0.102 0.898 9 C 0.162 3.838 10 N -0.373 5.373 11 C 0.407 3.593 12 O -0.533 6.533 13 N -0.377 5.377 14 C -0.031 4.031 15 C -0.143 4.143 16 C -0.064 4.064 17 H 0.127 0.873 18 C -0.126 4.126 19 C -0.097 4.097 20 C -0.185 4.185 21 C -0.077 4.077 22 N -0.224 5.224 23 C -0.068 4.068 24 C 0.005 3.995 25 H 0.078 0.922 26 H 0.003 0.997 27 H 0.002 0.998 28 H 0.239 0.761 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.132 0.868 33 H 0.176 0.824 34 H 0.183 0.817 35 H 0.192 0.808 36 H 0.169 0.831 37 H 0.076 0.924 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 14.522 -22.180 1.881 26.578 hybrid contribution -0.093 1.226 0.657 1.394 sum 14.429 -20.954 2.538 25.568 Atomic orbital electron populations 1.70152 1.08334 1.28614 1.49889 1.26093 0.95797 1.03939 0.93807 0.85116 0.78482 0.76744 0.78612 1.19595 1.20913 1.17777 1.21575 0.94268 0.90342 1.53013 0.89825 1.18427 0.88098 0.83327 0.93910 1.45296 1.10881 1.03573 1.77526 1.15853 0.84199 0.81108 0.78117 1.90835 1.16501 1.84709 1.61267 1.47536 1.06951 1.04968 1.78231 1.22305 0.78122 0.99875 1.02813 1.22724 0.97578 0.90789 1.03256 1.21122 0.94104 0.89629 1.01511 0.87315 1.20543 1.01922 0.95444 0.94651 1.21879 0.94656 0.92054 1.01142 1.22486 1.00438 0.98400 0.97166 1.23265 0.94950 0.98833 0.90650 1.67707 1.12876 1.00729 1.41094 1.22726 0.95817 0.93795 0.94445 1.22164 0.98178 0.78437 1.00727 0.92203 0.99652 0.99794 0.76105 0.90762 0.90404 0.89544 0.86813 0.82354 0.81721 0.80796 0.83110 0.92395 0.91833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.96 13.29 21.45 0.28 -56.67 16 2 C 0.00 0.18 5.46 84.66 0.46 0.64 16 3 Si 0.99 42.51 29.54 68.60 2.03 44.54 16 4 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 6 H -0.25 -10.10 7.11 99.48 0.71 -9.40 16 7 C -0.55 -30.67 9.28 25.60 0.24 -30.43 16 8 H 0.08 4.17 7.60 -2.91 -0.02 4.14 16 9 C 0.29 16.31 5.43 85.64 0.46 16.77 16 10 N -0.72 -32.61 5.51 -482.31 -2.66 -35.27 16 11 C 0.71 31.51 8.49 179.05 1.52 33.03 16 12 O -0.65 -35.70 16.60 -4.01 -0.07 -35.77 16 13 N -0.64 -20.11 3.33 -830.16 -2.76 -22.87 16 14 C 0.09 1.88 6.15 86.73 0.53 2.42 16 15 C -0.11 -1.45 6.37 31.78 0.20 -1.25 16 16 C -0.04 -0.72 3.26 -10.23 -0.03 -0.75 16 17 H 0.11 1.55 8.01 -2.39 -0.02 1.53 16 18 C -0.12 -1.96 5.01 -19.78 -0.10 -2.06 16 19 C -0.07 -0.88 9.83 22.47 0.22 -0.66 16 20 C -0.17 -1.83 10.11 22.36 0.23 -1.60 16 21 C 0.08 1.18 11.18 84.69 0.95 2.12 16 22 N -0.52 -10.69 10.36 -195.84 -2.03 -12.72 16 23 C 0.09 1.70 9.50 84.67 0.80 2.51 16 24 C 0.13 3.35 6.31 86.78 0.55 3.90 16 25 H 0.27 15.31 8.31 -92.70 -0.77 14.54 16 26 H -0.01 -0.93 8.14 -2.38 -0.02 -0.95 16 27 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 28 H 0.40 15.22 7.31 -92.71 -0.68 14.54 16 29 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 30 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.09 1.12 7.25 -2.39 -0.02 1.10 16 32 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.16 1.16 8.04 -2.91 -0.02 1.13 16 34 H 0.17 0.77 8.06 -2.91 -0.02 0.74 16 35 H 0.17 1.63 8.06 -2.91 -0.02 1.60 16 36 H 0.15 2.82 7.03 -2.91 -0.02 2.80 16 37 H 0.06 1.75 8.04 -2.39 -0.02 1.73 16 38 H 0.06 1.66 6.65 -2.38 -0.02 1.65 16 Total: -1.00 -79.22 321.37 1.22 -78.00 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 0.39 Total: 16.13 kcal Atomic # 6 Polarization: 18.60 SS G_CDS: 6.03 Total: 24.63 kcal Atomic # 7 Polarization: -120.37 SS G_CDS: -7.16 Total: -127.53 kcal Atomic # 8 Polarization: -35.70 SS G_CDS: -0.07 Total: -35.77 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -79.22 1.22 -78.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335460974.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.245 kcal (2) G-P(sol) polarization free energy of solvation -79.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds