Wall clock time and date at job start Mon Mar 30 2020 02:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00151 * 2 1 4 4 H 1.48496 * 109.47010 * 240.00115 * 3 2 1 5 5 H 1.48505 * 109.47188 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47108 * 119.99730 * 3 2 1 7 7 C 1.37874 * 119.99983 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00234 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00106 * 0.02562 * 7 2 1 10 10 C 1.53037 * 109.46142 * 180.02562 * 9 7 2 11 11 C 1.53185 * 109.31277 * 178.62913 * 10 9 7 12 12 N 1.46931 * 108.78029 * 54.63085 * 11 10 9 13 13 C 1.34772 * 120.63033 * 126.36725 * 12 11 10 14 14 O 1.21572 * 120.00123 * 5.45649 * 13 12 11 15 15 N 1.34779 * 119.99880 * 185.44788 * 13 12 11 16 16 C 1.39392 * 119.99857 * 184.85038 * 15 13 12 17 17 C 1.39038 * 119.70276 * 338.53704 * 16 15 13 18 18 C 1.38347 * 119.10376 * 179.97438 * 17 16 15 19 19 C 1.38842 * 118.49584 * 359.97438 * 18 17 16 20 20 C 1.38058 * 119.31362 * 0.27965 * 19 18 17 21 21 N 1.31943 * 120.84539 * 359.44365 * 20 19 18 22 22 C 1.46930 * 118.73505 * 306.64695 * 12 11 10 23 23 C 1.52758 * 109.00752 * 53.30453 * 22 12 11 24 24 H 0.97001 * 119.99823 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.45282 * 299.96836 * 9 7 2 26 26 H 1.08999 * 109.49804 * 58.67084 * 10 9 7 27 27 H 1.09006 * 109.51813 * 298.59428 * 10 9 7 28 28 H 1.09005 * 109.58690 * 294.84102 * 11 10 9 29 29 H 1.09001 * 109.70866 * 174.49172 * 11 10 9 30 30 H 0.97002 * 119.99480 * 4.86129 * 15 13 12 31 31 H 1.07997 * 120.44614 * 0.02562 * 17 16 15 32 32 H 1.08007 * 120.74985 * 180.02562 * 18 17 16 33 33 H 1.08003 * 120.34481 * 179.97438 * 19 18 17 34 34 H 1.08003 * 119.57763 * 179.72220 * 20 19 18 35 35 H 1.08998 * 109.58158 * 173.13861 * 22 12 11 36 36 H 1.09003 * 109.58419 * 293.56821 * 22 12 11 37 37 H 1.08998 * 109.56383 * 185.54915 * 23 22 12 38 38 H 1.09006 * 109.38775 * 65.51645 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2457 -3.6622 0.0018 11 6 1.4766 -4.9866 0.0364 12 7 0.5231 -5.0092 -1.0813 13 6 0.5136 -6.0352 -1.9551 14 8 1.2292 -7.0000 -1.7675 15 7 -0.2893 -5.9918 -3.0368 16 6 -0.3750 -7.0940 -3.8858 17 6 0.6496 -8.0337 -3.9004 18 6 0.5515 -9.1231 -4.7475 19 6 -0.5731 -9.2360 -5.5539 20 6 -1.5500 -8.2625 -5.4916 21 7 -1.4316 -7.2370 -4.6699 22 6 -0.4156 -3.8889 -1.2318 23 6 0.3710 -2.5796 -1.2490 24 1 -0.4850 0.8401 0.0004 25 1 0.6245 -2.5567 0.8907 26 1 2.8874 -3.5911 0.8800 27 1 2.8568 -3.6198 -0.8998 28 1 0.9363 -5.0709 0.9794 29 1 2.1735 -5.8190 -0.0609 30 1 -0.8073 -5.1934 -3.2244 31 1 1.5101 -7.9152 -3.2586 32 1 1.3317 -9.8693 -4.7802 33 1 -0.6802 -10.0742 -6.2266 34 1 -2.4244 -8.3437 -6.1202 35 1 -0.9650 -3.9959 -2.1671 36 1 -1.1133 -3.8819 -0.3943 37 1 -0.3214 -1.7379 -1.2611 38 1 0.9993 -2.5465 -2.1391 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335492256.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:19 Heat of formation + Delta-G solvation = 21.641530 kcal Electronic energy + Delta-G solvation = -21034.043169 eV Core-core repulsion = 17876.967504 eV Total energy + Delta-G solvation = -3157.075665 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.97763 -39.47681 -37.15796 -34.88094 -33.63490 -32.35353 -31.43708 -30.21850 -29.59627 -26.28351 -23.91702 -23.53171 -22.78074 -22.20143 -20.44507 -19.11123 -18.29342 -17.42874 -16.40337 -16.35767 -15.82467 -15.53028 -14.85605 -14.58277 -14.18008 -14.02282 -13.74766 -13.22434 -13.13006 -12.88376 -12.72101 -12.48512 -12.22940 -11.67265 -11.34433 -10.96696 -10.76639 -10.70235 -10.45916 -10.21167 -9.91094 -9.71301 -9.65737 -9.42549 -9.24710 -9.03481 -8.48256 -8.38086 -7.99342 -6.07926 -4.14228 1.15167 1.30627 2.55573 3.17613 3.27181 3.32237 3.35079 3.86318 3.93689 4.37259 4.58241 4.82986 5.07283 5.12609 5.20675 5.28109 5.45638 5.63730 5.82018 5.88396 5.96572 5.98339 6.06539 6.16496 6.23330 6.31006 6.40355 6.57219 6.66272 6.87150 6.91817 7.02275 7.07511 7.24709 7.60153 7.80007 7.85096 7.97501 8.14024 8.34303 8.59310 8.88948 9.51312 10.97645 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.035519 B = 0.003801 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.125881 B = 7364.088744 C = 7734.566773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.514 4.514 8 H 0.055 0.945 9 C 0.049 3.951 10 C -0.125 4.125 11 C 0.128 3.872 12 N -0.607 5.607 13 C 0.711 3.289 14 O -0.583 6.583 15 N -0.669 5.669 16 C 0.376 3.624 17 C -0.188 4.188 18 C -0.060 4.060 19 C -0.208 4.208 20 C 0.122 3.878 21 N -0.522 5.522 22 C 0.105 3.895 23 C -0.126 4.126 24 H 0.261 0.739 25 H 0.029 0.971 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.414 0.586 31 H 0.177 0.823 32 H 0.134 0.866 33 H 0.131 0.869 34 H 0.156 0.844 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.107 0.893 38 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.290 -13.826 -7.862 16.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.552 4.552 8 H 0.073 0.927 9 C 0.031 3.969 10 C -0.163 4.163 11 C 0.006 3.994 12 N -0.342 5.342 13 C 0.413 3.587 14 O -0.462 6.462 15 N -0.319 5.319 16 C 0.144 3.856 17 C -0.210 4.210 18 C -0.087 4.087 19 C -0.229 4.229 20 C -0.035 4.035 21 N -0.237 5.237 22 C -0.017 4.017 23 C -0.164 4.164 24 H 0.071 0.929 25 H 0.047 0.953 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.100 0.900 30 H 0.253 0.747 31 H 0.193 0.807 32 H 0.152 0.848 33 H 0.149 0.851 34 H 0.174 0.826 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.125 0.875 38 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.583 -13.652 -7.567 15.821 hybrid contribution 0.634 0.814 -0.241 1.060 sum -1.949 -12.838 -7.807 15.151 Atomic orbital electron populations 1.69812 1.05856 1.26670 1.50731 1.24956 0.94881 0.99090 0.94997 0.86665 0.79631 0.83117 0.78635 1.20332 1.21298 1.20285 1.21161 0.92943 0.90528 1.50540 0.92694 1.18621 0.92626 0.91800 0.93863 1.22047 0.98943 0.94148 1.01201 1.21691 0.91060 0.99805 0.86838 1.47515 1.38053 1.20526 1.28085 1.15662 0.80310 0.83499 0.79272 1.90699 1.45558 1.33334 1.76617 1.42634 1.47782 1.16545 1.24900 1.18112 0.89837 0.87828 0.89795 1.22865 1.01574 0.95152 1.01454 1.21557 0.97149 0.96809 0.93140 1.21993 0.96557 1.01541 1.02856 1.22350 0.98190 0.88564 0.94388 1.67006 1.22519 1.25456 1.08737 1.21948 0.91721 0.87759 1.00241 1.21982 1.00181 0.94389 0.99860 0.92861 0.95311 0.91808 0.92857 0.91908 0.90012 0.74688 0.80670 0.84835 0.85088 0.82645 0.92357 0.91311 0.87534 0.94147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.93 11.31 55.43 0.63 -23.30 16 2 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 3 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.51 -13.32 8.56 -34.44 -0.29 -13.62 16 8 H 0.05 1.42 7.74 -52.48 -0.41 1.02 16 9 C 0.05 1.13 2.07 -91.73 -0.19 0.94 16 10 C -0.13 -2.44 5.30 -26.62 -0.14 -2.58 16 11 C 0.13 2.23 6.42 -3.71 -0.02 2.20 16 12 N -0.61 -10.57 2.98 -178.76 -0.53 -11.10 16 13 C 0.71 12.45 8.20 -86.92 -0.71 11.74 16 14 O -0.58 -11.11 12.46 5.30 0.07 -11.04 16 15 N -0.67 -10.46 5.32 -15.81 -0.08 -10.55 16 16 C 0.38 5.80 7.51 -154.71 -1.16 4.64 16 17 C -0.19 -2.74 8.89 -39.24 -0.35 -3.09 16 18 C -0.06 -0.69 10.17 -39.32 -0.40 -1.09 16 19 C -0.21 -2.08 10.10 -39.42 -0.40 -2.48 16 20 C 0.12 1.37 11.17 -17.57 -0.20 1.17 16 21 N -0.52 -7.48 10.39 -12.37 -0.13 -7.61 16 22 C 0.11 1.81 6.40 -3.93 -0.03 1.79 16 23 C -0.13 -2.65 5.14 -26.84 -0.14 -2.79 16 24 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 25 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.08 1.39 7.04 -51.93 -0.37 1.02 16 30 H 0.41 5.91 6.31 -40.82 -0.26 5.65 16 31 H 0.18 2.84 5.18 -52.82 -0.27 2.57 16 32 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 33 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 34 H 0.16 1.22 8.06 -52.48 -0.42 0.80 16 35 H 0.06 0.86 5.58 -51.93 -0.29 0.57 16 36 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.11 2.52 6.03 -51.93 -0.31 2.21 16 38 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 307.77 15.07 4.64 4.64 Total: -1.00 -28.81 307.77 -9.41 -38.21 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -4.85 Total: 6.89 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -4.12 Total: -1.64 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: -0.12 Total: -52.56 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.07 Total: -11.04 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.81 -9.41 -38.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335492256.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.854 kcal (2) G-P(sol) polarization free energy of solvation -28.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds