Wall clock time and date at job start Mon Mar 30 2020 02:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00151 * 2 1 4 4 H 1.48496 * 109.47010 * 240.00115 * 3 2 1 5 5 H 1.48505 * 109.47188 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47108 * 119.99730 * 3 2 1 7 7 C 1.37874 * 119.99983 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00234 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00106 * 0.02562 * 7 2 1 10 10 C 1.53037 * 109.46142 * 180.02562 * 9 7 2 11 11 C 1.53185 * 109.31277 * 178.62913 * 10 9 7 12 12 N 1.46931 * 108.78029 * 54.63085 * 11 10 9 13 13 C 1.34772 * 120.63033 * 126.36725 * 12 11 10 14 14 O 1.21572 * 120.00123 * 5.45649 * 13 12 11 15 15 N 1.34779 * 119.99880 * 185.44788 * 13 12 11 16 16 C 1.39392 * 119.99857 * 184.85038 * 15 13 12 17 17 C 1.39038 * 119.70276 * 338.53704 * 16 15 13 18 18 C 1.38347 * 119.10376 * 179.97438 * 17 16 15 19 19 C 1.38842 * 118.49584 * 359.97438 * 18 17 16 20 20 C 1.38058 * 119.31362 * 0.27965 * 19 18 17 21 21 N 1.31943 * 120.84539 * 359.44365 * 20 19 18 22 22 C 1.46930 * 118.73505 * 306.64695 * 12 11 10 23 23 C 1.52758 * 109.00752 * 53.30453 * 22 12 11 24 24 H 0.97001 * 119.99823 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.45282 * 299.96836 * 9 7 2 26 26 H 1.08999 * 109.49804 * 58.67084 * 10 9 7 27 27 H 1.09006 * 109.51813 * 298.59428 * 10 9 7 28 28 H 1.09005 * 109.58690 * 294.84102 * 11 10 9 29 29 H 1.09001 * 109.70866 * 174.49172 * 11 10 9 30 30 H 0.97002 * 119.99480 * 4.86129 * 15 13 12 31 31 H 1.07997 * 120.44614 * 0.02562 * 17 16 15 32 32 H 1.08007 * 120.74985 * 180.02562 * 18 17 16 33 33 H 1.08003 * 120.34481 * 179.97438 * 19 18 17 34 34 H 1.08003 * 119.57763 * 179.72220 * 20 19 18 35 35 H 1.08998 * 109.58158 * 173.13861 * 22 12 11 36 36 H 1.09003 * 109.58419 * 293.56821 * 22 12 11 37 37 H 1.08998 * 109.56383 * 185.54915 * 23 22 12 38 38 H 1.09006 * 109.38775 * 65.51645 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2457 -3.6622 0.0018 11 6 1.4766 -4.9866 0.0364 12 7 0.5231 -5.0092 -1.0813 13 6 0.5136 -6.0352 -1.9551 14 8 1.2292 -7.0000 -1.7675 15 7 -0.2893 -5.9918 -3.0368 16 6 -0.3750 -7.0940 -3.8858 17 6 0.6496 -8.0337 -3.9004 18 6 0.5515 -9.1231 -4.7475 19 6 -0.5731 -9.2360 -5.5539 20 6 -1.5500 -8.2625 -5.4916 21 7 -1.4316 -7.2370 -4.6699 22 6 -0.4156 -3.8889 -1.2318 23 6 0.3710 -2.5796 -1.2490 24 1 -0.4850 0.8401 0.0004 25 1 0.6245 -2.5567 0.8907 26 1 2.8874 -3.5911 0.8800 27 1 2.8568 -3.6198 -0.8998 28 1 0.9363 -5.0709 0.9794 29 1 2.1735 -5.8190 -0.0609 30 1 -0.8073 -5.1934 -3.2244 31 1 1.5101 -7.9152 -3.2586 32 1 1.3317 -9.8693 -4.7802 33 1 -0.6802 -10.0742 -6.2266 34 1 -2.4244 -8.3437 -6.1202 35 1 -0.9650 -3.9959 -2.1671 36 1 -1.1133 -3.8819 -0.3943 37 1 -0.3214 -1.7379 -1.2611 38 1 0.9993 -2.5465 -2.1391 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335492256.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:19 Heat of formation + Delta-G solvation = 5.514400 kcal Electronic energy + Delta-G solvation = -21034.742493 eV Core-core repulsion = 17876.967504 eV Total energy + Delta-G solvation = -3157.774990 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.18484 -40.61790 -38.65742 -36.10414 -35.38332 -33.31450 -33.10542 -31.77581 -30.70658 -28.01971 -25.29277 -24.57358 -24.24375 -23.58590 -21.87745 -20.55314 -19.61108 -18.69104 -18.27020 -17.35653 -16.99665 -16.86621 -16.48113 -16.01010 -15.36672 -15.16847 -15.00789 -14.89582 -14.50028 -14.33479 -14.03214 -13.95207 -13.37058 -13.21483 -12.94969 -12.79559 -12.49470 -12.15774 -11.98944 -11.85011 -11.47140 -11.08950 -11.01944 -10.83405 -10.72398 -10.47723 -10.39510 -9.75926 -9.19648 -8.07692 -6.20548 0.18444 0.38112 1.32156 1.43296 1.44169 1.51121 1.88063 2.44573 2.58127 2.94583 3.19218 3.67130 3.92630 4.01578 4.15224 4.21583 4.31441 4.37486 4.41338 4.42954 4.57499 4.65779 4.84245 4.91921 4.95838 5.05190 5.18824 5.20171 5.30359 5.36349 5.41457 5.46510 5.64451 5.78751 5.91743 5.99292 6.12146 6.39331 6.57601 6.88924 7.05970 7.26489 7.47294 8.95529 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.035519 B = 0.003801 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.125881 B = 7364.088744 C = 7734.566773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.018 3.982 3 Si 0.947 3.053 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.048 0.952 9 C 0.046 3.954 10 C -0.114 4.114 11 C 0.135 3.865 12 N -0.610 5.610 13 C 0.711 3.289 14 O -0.600 6.600 15 N -0.665 5.665 16 C 0.345 3.655 17 C -0.211 4.211 18 C -0.059 4.059 19 C -0.191 4.191 20 C 0.115 3.885 21 N -0.540 5.540 22 C 0.117 3.883 23 C -0.115 4.115 24 H 0.261 0.739 25 H 0.006 0.994 26 H 0.069 0.931 27 H 0.043 0.957 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.417 0.583 31 H 0.155 0.845 32 H 0.161 0.839 33 H 0.173 0.827 34 H 0.191 0.809 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.723 -15.473 -9.336 18.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.181 4.181 3 Si 0.774 3.226 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.573 4.573 8 H 0.067 0.933 9 C 0.027 3.973 10 C -0.153 4.153 11 C 0.012 3.988 12 N -0.345 5.345 13 C 0.412 3.588 14 O -0.481 6.481 15 N -0.315 5.315 16 C 0.116 3.884 17 C -0.234 4.234 18 C -0.085 4.085 19 C -0.212 4.212 20 C -0.042 4.042 21 N -0.256 5.256 22 C -0.005 4.005 23 C -0.154 4.154 24 H 0.071 0.929 25 H 0.024 0.976 26 H 0.088 0.912 27 H 0.062 0.938 28 H 0.092 0.908 29 H 0.106 0.894 30 H 0.257 0.743 31 H 0.172 0.828 32 H 0.179 0.821 33 H 0.190 0.810 34 H 0.208 0.792 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -3.020 -15.312 -9.058 18.045 hybrid contribution 0.751 1.225 0.119 1.442 sum -2.269 -14.087 -8.939 16.837 Atomic orbital electron populations 1.69929 1.06785 1.27185 1.51192 1.25619 0.95678 1.01903 0.94889 0.85779 0.78529 0.79736 0.78579 1.20114 1.20962 1.19950 1.21529 0.92970 0.92227 1.50583 0.93339 1.18599 0.93071 0.92027 0.93589 1.21886 0.98286 0.94128 1.00976 1.21604 0.91207 0.98486 0.87481 1.47479 1.38139 1.20619 1.28253 1.15707 0.80400 0.83149 0.79510 1.90701 1.46314 1.33937 1.77121 1.42494 1.47411 1.17079 1.24487 1.18273 0.90938 0.88284 0.90949 1.22769 1.01065 0.96742 1.02800 1.21930 0.98416 0.96068 0.92086 1.22443 0.94930 1.01874 1.01936 1.23084 0.99599 0.87795 0.93719 1.67027 1.22304 1.26945 1.09308 1.21772 0.91165 0.85724 1.01878 1.21729 0.99486 0.95764 0.98419 0.92941 0.97551 0.91237 0.93819 0.90780 0.89366 0.74299 0.82810 0.82122 0.80989 0.79239 0.89755 0.90912 0.90056 0.95282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.72 11.31 21.45 0.24 -49.47 16 2 C 0.02 0.96 5.30 84.65 0.45 1.41 16 3 Si 0.95 42.38 29.54 68.60 2.03 44.41 16 4 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 7 C -0.54 -28.30 8.56 25.60 0.22 -28.08 16 8 H 0.05 2.56 7.74 -2.91 -0.02 2.53 16 9 C 0.05 2.14 2.07 -11.51 -0.02 2.11 16 10 C -0.11 -4.51 5.30 30.67 0.16 -4.34 16 11 C 0.13 4.63 6.42 86.36 0.55 5.19 16 12 N -0.61 -21.11 2.98 -837.75 -2.50 -23.60 16 13 C 0.71 24.82 8.20 179.06 1.47 26.29 16 14 O -0.60 -22.98 12.46 -3.94 -0.05 -23.03 16 15 N -0.66 -20.66 5.32 -322.22 -1.71 -22.38 16 16 C 0.35 10.45 7.51 132.92 1.00 11.45 16 17 C -0.21 -6.03 8.89 22.49 0.20 -5.83 16 18 C -0.06 -1.19 10.17 22.44 0.23 -0.96 16 19 C -0.19 -3.06 10.10 22.37 0.23 -2.83 16 20 C 0.12 2.21 11.17 84.63 0.95 3.15 16 21 N -0.54 -14.63 10.39 -193.05 -2.01 -16.63 16 22 C 0.12 4.00 6.40 86.22 0.55 4.56 16 23 C -0.12 -4.97 5.14 30.53 0.16 -4.82 16 24 H 0.26 13.70 8.31 -92.71 -0.77 12.92 16 25 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 26 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 27 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 28 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 29 H 0.09 2.95 7.04 -2.39 -0.02 2.94 16 30 H 0.42 11.75 6.31 -92.71 -0.59 11.17 16 31 H 0.15 5.06 5.18 -8.14 -0.04 5.02 16 32 H 0.16 2.26 8.06 -2.91 -0.02 2.23 16 33 H 0.17 1.36 8.06 -2.91 -0.02 1.33 16 34 H 0.19 2.18 8.06 -2.91 -0.02 2.16 16 35 H 0.08 2.44 5.58 -2.39 -0.01 2.43 16 36 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.08 3.95 6.03 -2.39 -0.01 3.94 16 38 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 Total: -1.00 -63.18 307.77 2.61 -60.56 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: 0.47 Total: 22.84 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: 6.14 Total: 7.29 kcal Atomic # 7 Polarization: -106.11 SS G_CDS: -5.97 Total: -112.08 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -0.05 Total: -23.03 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -63.18 2.61 -60.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335492256.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.079 kcal (2) G-P(sol) polarization free energy of solvation -63.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds