Wall clock time and date at job start Mon Mar 30 2020 01:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42905 * 113.99706 * 2 1 4 4 H 1.08997 * 110.91449 * 327.54236 * 3 2 1 5 5 C 1.55451 * 111.11499 * 203.55454 * 3 2 1 6 6 C 1.54325 * 102.96600 * 206.46075 * 5 3 2 7 7 N 1.47015 * 107.27089 * 22.19609 * 6 5 3 8 8 C 1.34783 * 125.64566 * 181.08032 * 7 6 5 9 9 O 1.21586 * 119.99888 * 174.21839 * 8 7 6 10 10 C 1.47638 * 119.99852 * 354.21882 * 8 7 6 11 11 C 1.40005 * 119.89560 * 7.15115 * 10 8 7 12 12 C 1.36325 * 120.10263 * 179.71852 * 11 10 8 13 13 C 1.40883 * 119.89292 * 0.57548 * 12 11 10 14 14 C 1.41107 * 120.10366 * 179.67967 * 13 12 11 15 15 H 1.08004 * 120.00073 * 214.81331 * 14 13 12 16 16 C 1.40229 * 120.00409 * 34.80806 * 14 13 12 17 17 N 1.30644 * 119.99742 * 355.54325 * 16 14 13 18 18 Si 1.86798 * 120.00202 * 175.54699 * 16 14 13 19 19 H 1.48500 * 109.47027 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47516 * 119.99947 * 18 16 14 21 21 H 1.48507 * 109.46790 * 240.00208 * 18 16 14 22 22 C 1.40883 * 119.79511 * 359.69904 * 13 12 11 23 23 C 1.36320 * 119.89037 * 359.97438 * 22 13 12 24 24 C 1.47420 * 108.70659 * 1.05531 * 7 6 5 25 25 H 1.08995 * 109.46846 * 60.00614 * 1 2 3 26 26 H 1.08997 * 109.46547 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47076 * 300.00116 * 1 2 3 28 28 H 1.08996 * 110.70652 * 88.08796 * 5 3 2 29 29 H 1.09002 * 110.70616 * 324.83585 * 5 3 2 30 30 H 1.08998 * 109.87921 * 262.77374 * 6 5 3 31 31 H 1.08999 * 109.87749 * 141.61013 * 6 5 3 32 32 H 1.07999 * 119.95348 * 0.02562 * 11 10 8 33 33 H 1.08002 * 120.05225 * 180.25750 * 12 11 10 34 34 H 0.96999 * 120.00095 * 180.02562 * 17 16 14 35 35 H 1.08000 * 120.05788 * 179.97438 * 22 13 12 36 36 H 1.08006 * 119.94667 * 180.02562 * 23 22 13 37 37 H 1.08995 * 110.36844 * 94.71465 * 24 7 6 38 38 H 1.09005 * 110.37038 * 216.92557 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3836 2.0104 -0.5464 5 6 3.4524 1.2765 -0.5795 6 6 4.1229 2.4893 0.0995 7 7 3.3601 2.7822 1.3217 8 6 3.6152 3.7848 2.1855 9 8 2.8551 3.9989 3.1101 10 6 4.8176 4.6232 2.0091 11 6 5.6100 4.4747 0.8644 12 6 6.7179 5.2506 0.6945 13 6 7.0719 6.1944 1.6787 14 6 8.2216 6.9951 1.5105 15 1 8.8158 7.2737 2.3682 16 6 8.5927 7.4289 0.2297 17 7 7.9256 7.0211 -0.8169 18 14 10.0410 8.5898 0.0200 19 1 10.6233 8.9002 1.3504 20 1 11.0716 7.9465 -0.8340 21 1 9.5792 9.8463 -0.6229 22 6 6.2747 6.3361 2.8316 23 6 5.1648 5.5605 2.9896 24 6 2.2696 1.7979 1.4456 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.4353 1.4014 -1.6622 29 1 3.9595 0.3516 -0.3049 30 1 4.0966 3.3498 -0.5691 31 1 5.1544 2.2474 0.3554 32 1 5.3403 3.7479 0.1125 33 1 7.3262 5.1383 -0.1909 34 1 8.1825 7.3208 -1.7029 35 1 6.5423 7.0580 3.5889 36 1 4.5527 5.6686 3.8729 37 1 2.5787 0.9671 2.0797 38 1 1.3754 2.2714 1.8512 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335706830.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:24 Heat of formation + Delta-G solvation = -37.676304 kcal Electronic energy + Delta-G solvation = -20799.741221 eV Core-core repulsion = 17607.800590 eV Total energy + Delta-G solvation = -3191.940630 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.95488 -38.26649 -37.04217 -36.06962 -33.79164 -31.23639 -30.23427 -29.51596 -28.42470 -26.80962 -25.70082 -23.61655 -21.72560 -21.09707 -20.59949 -19.14429 -17.46284 -17.17286 -16.69170 -15.56066 -15.40132 -15.21609 -14.87825 -14.64722 -14.13576 -13.69761 -13.29461 -13.22339 -12.92393 -12.60962 -12.46557 -12.29199 -11.91004 -11.83334 -11.59836 -11.41937 -11.23840 -11.07131 -10.84273 -10.66364 -10.55992 -9.96584 -9.82987 -9.46680 -9.30913 -8.97640 -8.28550 -7.70212 -7.39987 -6.86047 -4.61791 2.19531 2.93165 2.98564 3.01881 3.04219 3.20533 3.75678 3.80269 3.87951 4.44026 4.57038 4.64738 4.88257 5.10948 5.17753 5.22107 5.33605 5.48786 5.52675 5.60291 5.71454 5.81800 5.85441 5.97171 6.06360 6.15004 6.31081 6.63041 6.78802 6.89802 6.99996 7.05384 7.16859 7.49685 7.62492 7.81811 7.90346 8.08598 8.12842 8.46019 8.68755 8.77986 8.95285 10.02695 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.032733 B = 0.003912 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.194194 B = 7155.694623 C = 7875.021039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.376 6.376 3 C 0.073 3.927 4 H 0.078 0.922 5 C -0.131 4.131 6 C 0.101 3.899 7 N -0.623 5.623 8 C 0.587 3.413 9 O -0.571 6.571 10 C -0.267 4.267 11 C -0.107 4.107 12 C -0.167 4.167 13 C 0.125 3.875 14 C -0.450 4.450 15 H 0.082 0.918 16 C 0.070 3.930 17 N -0.793 5.793 18 Si 0.919 3.081 19 H -0.260 1.260 20 H -0.272 1.272 21 H -0.272 1.272 22 C -0.227 4.227 23 C -0.031 4.031 24 C 0.089 3.911 25 H 0.042 0.958 26 H 0.086 0.914 27 H 0.043 0.957 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.128 0.872 33 H 0.131 0.869 34 H 0.282 0.718 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.070 0.930 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.755 -9.136 -4.259 12.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.294 6.294 3 C 0.014 3.986 4 H 0.096 0.904 5 C -0.169 4.169 6 C -0.022 4.022 7 N -0.360 5.360 8 C 0.385 3.615 9 O -0.452 6.452 10 C -0.271 4.271 11 C -0.125 4.125 12 C -0.187 4.187 13 C 0.122 3.878 14 C -0.479 4.479 15 H 0.100 0.900 16 C -0.148 4.148 17 N -0.418 5.418 18 Si 0.743 3.257 19 H -0.183 1.183 20 H -0.197 1.197 21 H -0.197 1.197 22 C -0.247 4.247 23 C -0.051 4.051 24 C -0.035 4.035 25 H 0.061 0.939 26 H 0.104 0.896 27 H 0.062 0.938 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.145 0.855 33 H 0.149 0.851 34 H 0.093 0.907 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.088 0.912 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.028 -9.099 -3.972 12.165 hybrid contribution 0.348 0.835 -0.223 0.932 sum -6.680 -8.264 -4.195 11.425 Atomic orbital electron populations 1.22816 0.80940 1.02755 1.00246 1.87901 1.19811 1.26828 1.94841 1.23363 0.95068 0.84722 0.95469 0.90398 1.22893 0.93893 0.99360 1.00731 1.22510 0.96408 0.96668 0.86602 1.48126 1.31590 1.30857 1.25378 1.18420 0.85420 0.77947 0.79745 1.90644 1.50308 1.70989 1.33294 1.18912 1.00050 1.07130 1.01018 1.21918 0.95227 0.99201 0.96177 1.21317 0.98679 0.96696 1.01961 1.17899 0.91074 0.88534 0.90324 1.19797 1.08165 1.26453 0.93516 0.90022 1.26034 0.97009 0.96399 0.95353 1.69681 1.35875 1.36493 0.99798 0.86071 0.80294 0.79718 0.79568 1.18327 1.19684 1.19718 1.20859 0.97882 1.04247 1.01703 1.20382 0.95432 0.93031 0.96222 1.22489 0.91719 0.92366 0.96936 0.93912 0.89558 0.93799 0.89518 0.89510 0.89988 0.89723 0.85537 0.85124 0.90671 0.88276 0.88137 0.91196 0.90752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.89 101.05 1.10 1.35 16 2 O -0.38 -4.38 10.52 -35.23 -0.37 -4.75 16 3 C 0.07 0.87 3.50 -24.42 -0.09 0.78 16 4 H 0.08 0.86 7.90 -51.93 -0.41 0.45 16 5 C -0.13 -1.47 6.70 -24.74 -0.17 -1.64 16 6 C 0.10 1.44 4.86 -3.07 -0.01 1.43 16 7 N -0.62 -10.99 3.33 -177.73 -0.59 -11.58 16 8 C 0.59 12.92 7.80 -12.42 -0.10 12.83 16 9 O -0.57 -14.00 16.57 5.29 0.09 -13.91 16 10 C -0.27 -6.18 5.89 -104.73 -0.62 -6.79 16 11 C -0.11 -2.36 8.53 -39.61 -0.34 -2.70 16 12 C -0.17 -4.08 8.61 -39.27 -0.34 -4.42 16 13 C 0.12 3.19 5.55 -106.81 -0.59 2.60 16 14 C -0.45 -11.32 9.03 -37.75 -0.34 -11.66 16 15 H 0.08 1.97 7.85 -52.48 -0.41 1.56 16 16 C 0.07 1.66 5.42 -17.31 -0.09 1.56 16 17 N -0.79 -19.16 10.59 55.56 0.59 -18.57 16 18 Si 0.92 17.72 29.56 -169.99 -5.03 12.69 16 19 H -0.26 -4.98 7.11 56.52 0.40 -4.57 16 20 H -0.27 -5.12 7.11 56.52 0.40 -4.71 16 21 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 22 C -0.23 -5.54 9.73 -39.27 -0.38 -5.92 16 23 C -0.03 -0.75 9.52 -39.61 -0.38 -1.13 16 24 C 0.09 1.32 6.66 -2.53 -0.02 1.30 16 25 H 0.04 0.32 8.11 -51.93 -0.42 -0.10 16 26 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.08 1.18 6.73 -51.93 -0.35 0.83 16 31 H 0.08 1.23 6.73 -51.93 -0.35 0.88 16 32 H 0.13 2.34 2.70 -60.24 -0.16 2.18 16 33 H 0.13 3.25 6.13 -52.49 -0.32 2.92 16 34 H 0.28 6.16 8.29 -40.82 -0.34 5.82 16 35 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 36 H 0.10 2.32 7.65 -52.48 -0.40 1.91 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.07 1.15 7.98 -51.93 -0.41 0.73 16 LS Contribution 313.45 15.07 4.72 4.72 Total: -1.00 -29.40 313.45 -7.86 -37.26 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -4.91 Total: 6.55 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: -2.36 Total: -12.42 kcal Atomic # 7 Polarization: -30.15 SS G_CDS: 0.00 Total: -30.15 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.28 Total: -18.66 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.03 Total: 12.69 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.40 -7.86 -37.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335706830.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.418 kcal (2) G-P(sol) polarization free energy of solvation -29.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds