Wall clock time and date at job start Mon Mar 30 2020 01:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42905 * 113.99706 * 2 1 4 4 H 1.08997 * 110.91449 * 327.54236 * 3 2 1 5 5 C 1.55451 * 111.11499 * 203.55454 * 3 2 1 6 6 C 1.54325 * 102.96600 * 206.46075 * 5 3 2 7 7 N 1.47015 * 107.27089 * 22.19609 * 6 5 3 8 8 C 1.34783 * 125.64566 * 181.08032 * 7 6 5 9 9 O 1.21586 * 119.99888 * 174.21839 * 8 7 6 10 10 C 1.47638 * 119.99852 * 354.21882 * 8 7 6 11 11 C 1.40005 * 119.89560 * 7.15115 * 10 8 7 12 12 C 1.36325 * 120.10263 * 179.71852 * 11 10 8 13 13 C 1.40883 * 119.89292 * 0.57548 * 12 11 10 14 14 C 1.41107 * 120.10366 * 179.67967 * 13 12 11 15 15 H 1.08004 * 120.00073 * 214.81331 * 14 13 12 16 16 C 1.40229 * 120.00409 * 34.80806 * 14 13 12 17 17 N 1.30644 * 119.99742 * 355.54325 * 16 14 13 18 18 Si 1.86798 * 120.00202 * 175.54699 * 16 14 13 19 19 H 1.48500 * 109.47027 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47516 * 119.99947 * 18 16 14 21 21 H 1.48507 * 109.46790 * 240.00208 * 18 16 14 22 22 C 1.40883 * 119.79511 * 359.69904 * 13 12 11 23 23 C 1.36320 * 119.89037 * 359.97438 * 22 13 12 24 24 C 1.47420 * 108.70659 * 1.05531 * 7 6 5 25 25 H 1.08995 * 109.46846 * 60.00614 * 1 2 3 26 26 H 1.08997 * 109.46547 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47076 * 300.00116 * 1 2 3 28 28 H 1.08996 * 110.70652 * 88.08796 * 5 3 2 29 29 H 1.09002 * 110.70616 * 324.83585 * 5 3 2 30 30 H 1.08998 * 109.87921 * 262.77374 * 6 5 3 31 31 H 1.08999 * 109.87749 * 141.61013 * 6 5 3 32 32 H 1.07999 * 119.95348 * 0.02562 * 11 10 8 33 33 H 1.08002 * 120.05225 * 180.25750 * 12 11 10 34 34 H 0.96999 * 120.00095 * 180.02562 * 17 16 14 35 35 H 1.08000 * 120.05788 * 179.97438 * 22 13 12 36 36 H 1.08006 * 119.94667 * 180.02562 * 23 22 13 37 37 H 1.08995 * 110.36844 * 94.71465 * 24 7 6 38 38 H 1.09005 * 110.37038 * 216.92557 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3836 2.0104 -0.5464 5 6 3.4524 1.2765 -0.5795 6 6 4.1229 2.4893 0.0995 7 7 3.3601 2.7822 1.3217 8 6 3.6152 3.7848 2.1855 9 8 2.8551 3.9989 3.1101 10 6 4.8176 4.6232 2.0091 11 6 5.6100 4.4747 0.8644 12 6 6.7179 5.2506 0.6945 13 6 7.0719 6.1944 1.6787 14 6 8.2216 6.9951 1.5105 15 1 8.8158 7.2737 2.3682 16 6 8.5927 7.4289 0.2297 17 7 7.9256 7.0211 -0.8169 18 14 10.0410 8.5898 0.0200 19 1 10.6233 8.9002 1.3504 20 1 11.0716 7.9465 -0.8340 21 1 9.5792 9.8463 -0.6229 22 6 6.2747 6.3361 2.8316 23 6 5.1648 5.5605 2.9896 24 6 2.2696 1.7979 1.4456 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.4353 1.4014 -1.6622 29 1 3.9595 0.3516 -0.3049 30 1 4.0966 3.3498 -0.5691 31 1 5.1544 2.2474 0.3554 32 1 5.3403 3.7479 0.1125 33 1 7.3262 5.1383 -0.1909 34 1 8.1825 7.3208 -1.7029 35 1 6.5423 7.0580 3.5889 36 1 4.5527 5.6686 3.8729 37 1 2.5787 0.9671 2.0797 38 1 1.3754 2.2714 1.8512 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335706830.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:24 Heat of formation + Delta-G solvation = -55.121594 kcal Electronic energy + Delta-G solvation = -20800.497705 eV Core-core repulsion = 17607.800590 eV Total energy + Delta-G solvation = -3192.697115 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.38764 -39.57107 -38.73296 -37.34606 -35.59972 -32.73538 -31.67481 -31.36018 -29.71991 -27.92533 -27.13916 -25.01451 -23.24363 -22.67894 -21.98323 -20.73007 -19.29406 -18.22627 -18.15984 -17.27670 -16.72963 -16.40682 -16.17279 -15.80622 -15.62309 -15.04617 -14.91106 -14.66834 -14.33991 -14.19347 -13.92423 -13.64639 -13.51490 -13.29186 -12.84498 -12.78280 -12.63498 -12.42772 -12.30229 -12.18545 -11.72667 -11.66340 -11.21608 -11.08015 -10.81410 -10.59000 -9.75997 -9.56021 -9.25852 -8.64030 -6.51430 0.38936 1.12819 1.41105 1.42082 1.55757 1.92286 2.07978 2.20404 2.78143 2.83428 3.39678 3.56456 3.63544 3.96603 4.06984 4.18058 4.23844 4.42329 4.46506 4.47687 4.55394 4.58764 4.72091 4.74537 4.87689 4.95352 4.96871 5.06595 5.08344 5.14637 5.30155 5.35938 5.63580 5.80239 5.96411 6.02926 6.16925 6.25263 6.50059 6.58709 6.81925 6.90456 7.26093 8.27424 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.032733 B = 0.003912 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.194194 B = 7155.694623 C = 7875.021039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.387 6.387 3 C 0.083 3.917 4 H 0.091 0.909 5 C -0.118 4.118 6 C 0.090 3.910 7 N -0.619 5.619 8 C 0.583 3.417 9 O -0.605 6.605 10 C -0.278 4.278 11 C -0.097 4.097 12 C -0.185 4.185 13 C 0.097 3.903 14 C -0.481 4.481 15 H 0.080 0.920 16 C 0.033 3.967 17 N -0.816 5.816 18 Si 0.992 3.008 19 H -0.260 1.260 20 H -0.260 1.260 21 H -0.267 1.267 22 C -0.241 4.241 23 C -0.043 4.043 24 C 0.083 3.917 25 H 0.056 0.944 26 H 0.104 0.896 27 H 0.042 0.958 28 H 0.116 0.884 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.165 0.835 33 H 0.125 0.875 34 H 0.292 0.708 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.069 0.931 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.819 -10.074 -6.213 13.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.305 6.305 3 C 0.024 3.976 4 H 0.109 0.891 5 C -0.155 4.155 6 C -0.032 4.032 7 N -0.353 5.353 8 C 0.379 3.621 9 O -0.490 6.490 10 C -0.282 4.282 11 C -0.115 4.115 12 C -0.205 4.205 13 C 0.094 3.906 14 C -0.510 4.510 15 H 0.098 0.902 16 C -0.183 4.183 17 N -0.442 5.442 18 Si 0.812 3.188 19 H -0.184 1.184 20 H -0.185 1.185 21 H -0.192 1.192 22 C -0.260 4.260 23 C -0.062 4.062 24 C -0.040 4.040 25 H 0.075 0.925 26 H 0.122 0.878 27 H 0.060 0.940 28 H 0.134 0.866 29 H 0.112 0.888 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.181 0.819 33 H 0.143 0.857 34 H 0.103 0.897 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.087 0.913 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.111 -10.086 -5.957 13.704 hybrid contribution 0.255 1.021 0.385 1.121 sum -6.857 -9.065 -5.572 12.659 Atomic orbital electron populations 1.23041 0.79362 1.04210 1.00870 1.87891 1.21557 1.26296 1.94719 1.23251 0.95921 0.85315 0.93067 0.89101 1.22858 0.92845 0.97819 1.01993 1.22692 0.96568 0.98478 0.85427 1.48079 1.32287 1.29703 1.25231 1.18244 0.84856 0.78870 0.80154 1.90614 1.51186 1.72276 1.34923 1.19210 1.00762 1.07124 1.01100 1.22313 0.93817 0.98935 0.96388 1.21352 0.99797 0.97464 1.01867 1.18252 0.91886 0.89321 0.91108 1.20033 1.08772 1.27633 0.94590 0.90153 1.26872 0.99461 0.97543 0.94458 1.69709 1.36890 1.37081 1.00479 0.84994 0.76830 0.77459 0.79469 1.18357 1.18462 1.19172 1.20991 0.98222 1.04854 1.01954 1.20527 0.95426 0.93511 0.96762 1.22695 0.90363 0.91447 0.99508 0.92506 0.87802 0.93961 0.86578 0.88802 0.89599 0.89701 0.81878 0.85717 0.89658 0.87654 0.88049 0.91305 0.91712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.89 113.37 1.23 1.54 16 2 O -0.39 -7.87 10.52 -148.98 -1.57 -9.43 16 3 C 0.08 1.75 3.50 32.09 0.11 1.87 16 4 H 0.09 1.71 7.90 -2.39 -0.02 1.69 16 5 C -0.12 -2.23 6.70 31.89 0.21 -2.02 16 6 C 0.09 2.36 4.86 86.73 0.42 2.78 16 7 N -0.62 -21.16 3.33 -834.48 -2.78 -23.94 16 8 C 0.58 25.72 7.80 86.72 0.68 26.39 16 9 O -0.61 -30.20 16.57 -3.99 -0.07 -30.26 16 10 C -0.28 -12.99 5.89 -19.94 -0.12 -13.11 16 11 C -0.10 -4.25 8.53 22.25 0.19 -4.06 16 12 C -0.19 -9.17 8.61 22.47 0.19 -8.98 16 13 C 0.10 5.11 5.55 -21.28 -0.12 4.99 16 14 C -0.48 -24.69 9.03 23.46 0.21 -24.48 16 15 H 0.08 3.98 7.85 -2.91 -0.02 3.96 16 16 C 0.03 1.53 5.42 85.35 0.46 1.99 16 17 N -0.82 -39.27 10.59 21.87 0.23 -39.04 16 18 Si 0.99 35.77 29.56 68.60 2.03 37.79 16 19 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 20 H -0.26 -8.85 7.11 99.48 0.71 -8.14 16 21 H -0.27 -9.35 7.11 99.48 0.71 -8.65 16 22 C -0.24 -12.13 9.73 22.47 0.22 -11.91 16 23 C -0.04 -2.11 9.52 22.25 0.21 -1.90 16 24 C 0.08 2.36 6.66 86.85 0.58 2.94 16 25 H 0.06 0.67 8.11 -2.39 -0.02 0.65 16 26 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.09 2.24 6.73 -2.39 -0.02 2.23 16 31 H 0.09 2.28 6.73 -2.39 -0.02 2.26 16 32 H 0.16 5.79 2.70 -10.20 -0.03 5.76 16 33 H 0.13 6.26 6.13 -2.91 -0.02 6.24 16 34 H 0.29 12.54 8.29 -92.71 -0.77 11.77 16 35 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 36 H 0.10 4.85 7.65 -2.91 -0.02 4.83 16 37 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.06 1.96 7.98 -2.38 -0.02 1.94 16 Total: -1.00 -64.36 313.45 3.39 -60.97 By element: Atomic # 1 Polarization: 26.81 SS G_CDS: 1.05 Total: 27.86 kcal Atomic # 6 Polarization: -28.43 SS G_CDS: 4.49 Total: -23.94 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: -2.54 Total: -62.98 kcal Atomic # 8 Polarization: -38.06 SS G_CDS: -1.63 Total: -39.70 kcal Atomic # 14 Polarization: 35.77 SS G_CDS: 2.03 Total: 37.79 kcal Total: -64.36 3.39 -60.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335706830.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.847 kcal (2) G-P(sol) polarization free energy of solvation -64.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds