Wall clock time and date at job start Mon Mar 30 2020 01:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42898 * 113.99495 * 2 1 4 4 H 1.08992 * 110.88903 * 333.87764 * 3 2 1 5 5 C 1.55161 * 111.00136 * 209.99529 * 3 2 1 6 6 C 1.54326 * 102.94358 * 206.38732 * 5 3 2 7 7 N 1.47018 * 107.26634 * 22.19635 * 6 5 3 8 8 C 1.34785 * 125.64448 * 181.01917 * 7 6 5 9 9 O 1.21544 * 120.00189 * 174.22546 * 8 7 6 10 10 C 1.47890 * 119.99981 * 354.22280 * 8 7 6 11 11 C 1.39922 * 120.02187 * 7.36803 * 10 8 7 12 12 C 1.38326 * 120.35684 * 179.97438 * 11 10 8 13 13 C 1.37765 * 120.40863 * 359.71918 * 12 11 10 14 14 C 1.40741 * 120.03890 * 0.56287 * 13 12 11 15 15 C 1.41440 * 120.17995 * 179.71713 * 14 13 12 16 16 H 1.08001 * 119.99371 * 34.48774 * 15 14 13 17 17 C 1.39929 * 120.00086 * 214.49113 * 15 14 13 18 18 N 1.30826 * 120.00407 * 355.52887 * 17 15 14 19 19 Si 1.86803 * 119.99977 * 175.52841 * 17 15 14 20 20 H 1.48496 * 109.47247 * 270.00122 * 19 17 15 21 21 H 1.48503 * 109.47137 * 29.99973 * 19 17 15 22 22 H 1.48500 * 109.47290 * 149.99972 * 19 17 15 23 23 C 1.38990 * 120.02582 * 187.34864 * 10 8 7 24 24 C 1.47425 * 108.70829 * 1.28808 * 7 6 5 25 25 H 1.08994 * 109.47314 * 299.99685 * 1 2 3 26 26 H 1.09006 * 109.47152 * 60.00272 * 1 2 3 27 27 H 1.09001 * 109.47178 * 179.97438 * 1 2 3 28 28 H 1.09008 * 110.71343 * 88.02375 * 5 3 2 29 29 H 1.09001 * 110.87242 * 324.82644 * 5 3 2 30 30 H 1.09000 * 109.88169 * 262.78071 * 6 5 3 31 31 H 1.09002 * 110.00729 * 141.68503 * 6 5 3 32 32 H 1.08001 * 119.82328 * 0.02562 * 11 10 8 33 33 H 1.08000 * 119.79851 * 179.97438 * 12 11 10 34 34 H 1.07997 * 119.97951 * 180.29462 * 13 12 11 35 35 H 0.96993 * 120.00426 * 180.02562 * 18 17 15 36 36 H 1.07998 * 120.19937 * 0.04332 * 23 10 8 37 37 H 1.08992 * 110.36789 * 94.48028 * 24 7 6 38 38 H 1.09004 * 110.36449 * 216.80689 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3329 2.0323 -0.4483 5 6 3.3824 1.3034 -0.7242 6 6 4.1229 2.4862 -0.0652 7 7 3.4904 2.7241 1.2405 8 6 3.8367 3.6875 2.1172 9 8 3.1764 3.8599 3.1230 10 6 5.0201 4.5349 1.8553 11 6 5.6893 4.4434 0.6299 12 6 6.7966 5.2331 0.3774 13 6 7.2497 6.1227 1.3267 14 6 6.5930 6.2244 2.5673 15 6 7.0594 7.1324 3.5464 16 1 7.4853 8.0783 3.2462 17 6 6.9689 6.8050 4.9038 18 7 6.3745 5.6993 5.2720 19 14 7.6971 7.9468 6.1905 20 1 9.1092 7.5662 6.4479 21 1 7.6438 9.3465 5.6972 22 1 6.9171 7.8356 7.4493 23 6 5.4680 5.4231 2.8260 24 6 2.4189 1.7303 1.4349 25 1 -0.3633 0.5137 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 3.2546 1.4756 -1.7929 29 1 3.9139 0.3684 -0.5465 30 1 4.0308 3.3751 -0.6892 31 1 5.1752 2.2373 0.0725 32 1 5.3390 3.7531 -0.1232 33 1 7.3065 5.1548 -0.5714 34 1 8.1121 6.7393 1.1204 35 1 6.3115 5.4725 6.2129 36 1 4.9547 5.4968 3.7733 37 1 2.7934 0.8733 1.9946 38 1 1.5722 2.1817 1.9521 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335717829.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:28 Heat of formation + Delta-G solvation = -34.177404 kcal Electronic energy + Delta-G solvation = -20924.326079 eV Core-core repulsion = 17732.537172 eV Total energy + Delta-G solvation = -3191.788907 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.99963 -38.28530 -36.95925 -36.12013 -33.65203 -31.22912 -30.19785 -29.40414 -28.54889 -26.68211 -25.23635 -24.00533 -21.75326 -21.16877 -20.66403 -19.12699 -17.63988 -17.20173 -16.06484 -15.50187 -15.39251 -15.23170 -14.80180 -14.57394 -14.50053 -13.73375 -13.31708 -13.21637 -12.92125 -12.65072 -12.45237 -12.28454 -11.97464 -11.78609 -11.62713 -11.51065 -11.10751 -10.97723 -10.80236 -10.49889 -10.21456 -9.97820 -9.83464 -9.55289 -9.27148 -8.98063 -8.31688 -7.62415 -7.37060 -6.61933 -4.43260 2.18959 2.84410 3.10395 3.14437 3.14898 3.15923 3.72795 3.85338 3.98402 4.40796 4.57096 4.70919 4.83432 5.08405 5.15592 5.18353 5.31163 5.47304 5.49126 5.56096 5.66314 5.75801 5.83707 5.92284 6.01451 6.10388 6.29952 6.54170 6.73266 6.97730 7.02871 7.04379 7.28561 7.40964 7.66794 7.78902 7.92204 8.06742 8.22487 8.54778 8.84311 8.87436 8.91009 10.29044 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.031938 B = 0.004171 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.487480 B = 6711.068181 C = 7450.460955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.376 6.376 3 C 0.073 3.927 4 H 0.079 0.921 5 C -0.134 4.134 6 C 0.102 3.898 7 N -0.622 5.622 8 C 0.581 3.419 9 O -0.542 6.542 10 C -0.133 4.133 11 C -0.238 4.238 12 C -0.110 4.110 13 C -0.197 4.197 14 C 0.092 3.908 15 C -0.466 4.466 16 H 0.078 0.922 17 C 0.069 3.931 18 N -0.805 5.805 19 Si 0.917 3.083 20 H -0.270 1.270 21 H -0.263 1.263 22 H -0.277 1.277 23 C -0.080 4.080 24 C 0.089 3.911 25 H 0.044 0.956 26 H 0.042 0.958 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.128 0.872 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.281 0.719 36 H 0.143 0.857 37 H 0.072 0.928 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.848 -8.227 -10.211 14.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.294 6.294 3 C 0.015 3.985 4 H 0.097 0.903 5 C -0.172 4.172 6 C -0.021 4.021 7 N -0.359 5.359 8 C 0.375 3.625 9 O -0.419 6.419 10 C -0.136 4.136 11 C -0.257 4.257 12 C -0.128 4.128 13 C -0.217 4.217 14 C 0.090 3.910 15 C -0.496 4.496 16 H 0.096 0.904 17 C -0.147 4.147 18 N -0.432 5.432 19 Si 0.742 3.258 20 H -0.195 1.195 21 H -0.187 1.187 22 H -0.202 1.202 23 C -0.101 4.101 24 C -0.034 4.034 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.145 0.855 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.092 0.908 36 H 0.161 0.839 37 H 0.091 0.909 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.141 -8.364 -9.372 14.450 hybrid contribution 0.240 0.572 0.633 0.886 sum -6.901 -7.793 -8.739 13.591 Atomic orbital electron populations 1.22834 0.80888 1.02804 1.00227 1.87905 1.19841 1.26822 1.94803 1.23349 0.95036 0.84890 0.95261 0.90265 1.22880 0.94668 0.99638 0.99977 1.22505 0.97856 0.97147 0.84609 1.48192 1.35926 1.32558 1.19192 1.18650 0.84439 0.78292 0.81164 1.90705 1.54054 1.69642 1.27530 1.19471 0.96353 1.00733 0.97023 1.21788 1.00433 1.05605 0.97859 1.20514 0.96943 0.97558 0.97810 1.21299 1.01159 1.02534 0.96669 1.17645 0.89644 0.92167 0.91523 1.19514 1.36261 1.03571 0.90275 0.90356 1.25914 0.93730 0.95314 0.99784 1.69724 1.33119 1.21640 1.18670 0.86167 0.79390 0.80802 0.79434 1.19542 1.18685 1.20230 1.21937 0.95160 0.94666 0.98312 1.22537 0.91624 0.92393 0.96875 0.93750 0.93925 0.89541 0.89642 0.89492 0.90050 0.89667 0.85484 0.88828 0.88565 0.90789 0.83906 0.90940 0.90516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.85 101.05 1.10 1.34 16 2 O -0.38 -4.29 10.51 -35.23 -0.37 -4.66 16 3 C 0.07 0.85 3.56 -24.46 -0.09 0.76 16 4 H 0.08 0.83 7.83 -51.93 -0.41 0.42 16 5 C -0.13 -1.41 6.68 -24.89 -0.17 -1.58 16 6 C 0.10 1.38 4.87 -3.07 -0.01 1.36 16 7 N -0.62 -10.96 3.32 -176.41 -0.59 -11.55 16 8 C 0.58 13.24 7.81 -12.31 -0.10 13.14 16 9 O -0.54 -14.11 16.59 5.33 0.09 -14.02 16 10 C -0.13 -3.18 5.87 -105.04 -0.62 -3.80 16 11 C -0.24 -4.94 8.62 -38.92 -0.34 -5.27 16 12 C -0.11 -2.31 10.01 -39.72 -0.40 -2.71 16 13 C -0.20 -4.66 9.78 -38.81 -0.38 -5.04 16 14 C 0.09 2.47 5.55 -106.87 -0.59 1.88 16 15 C -0.47 -12.44 9.04 -37.73 -0.34 -12.78 16 16 H 0.08 1.99 7.85 -52.49 -0.41 1.57 16 17 C 0.07 1.77 5.42 -17.35 -0.09 1.68 16 18 N -0.81 -21.87 10.60 55.55 0.59 -21.28 16 19 Si 0.92 19.30 29.56 -169.99 -5.03 14.27 16 20 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 21 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 22 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 23 C -0.08 -2.18 8.21 -38.44 -0.32 -2.50 16 24 C 0.09 1.34 6.68 -2.41 -0.02 1.32 16 25 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.04 0.30 8.12 -51.93 -0.42 -0.12 16 27 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 29 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.08 1.05 6.73 -51.93 -0.35 0.70 16 31 H 0.09 1.18 6.73 -51.93 -0.35 0.83 16 32 H 0.13 2.13 2.71 -58.87 -0.16 1.97 16 33 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 34 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 35 H 0.28 7.06 8.30 -40.82 -0.34 6.72 16 36 H 0.14 4.24 5.74 -52.49 -0.30 3.94 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.08 1.19 7.98 -51.93 -0.41 0.78 16 LS Contribution 313.66 15.07 4.73 4.73 Total: -1.00 -31.15 313.66 -7.84 -38.99 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -4.91 Total: 5.73 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -2.36 Total: -12.21 kcal Atomic # 7 Polarization: -32.83 SS G_CDS: 0.00 Total: -32.83 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.28 Total: -18.68 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.03 Total: 14.27 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.15 -7.84 -38.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335717829.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.814 kcal (2) G-P(sol) polarization free energy of solvation -31.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds