Wall clock time and date at job start Mon Mar 30 2020 01:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42898 * 113.99495 * 2 1 4 4 H 1.08992 * 110.88903 * 333.87764 * 3 2 1 5 5 C 1.55161 * 111.00136 * 209.99529 * 3 2 1 6 6 C 1.54326 * 102.94358 * 206.38732 * 5 3 2 7 7 N 1.47018 * 107.26634 * 22.19635 * 6 5 3 8 8 C 1.34785 * 125.64448 * 181.01917 * 7 6 5 9 9 O 1.21544 * 120.00189 * 174.22546 * 8 7 6 10 10 C 1.47890 * 119.99981 * 354.22280 * 8 7 6 11 11 C 1.39922 * 120.02187 * 7.36803 * 10 8 7 12 12 C 1.38326 * 120.35684 * 179.97438 * 11 10 8 13 13 C 1.37765 * 120.40863 * 359.71918 * 12 11 10 14 14 C 1.40741 * 120.03890 * 0.56287 * 13 12 11 15 15 C 1.41440 * 120.17995 * 179.71713 * 14 13 12 16 16 H 1.08001 * 119.99371 * 34.48774 * 15 14 13 17 17 C 1.39929 * 120.00086 * 214.49113 * 15 14 13 18 18 N 1.30826 * 120.00407 * 355.52887 * 17 15 14 19 19 Si 1.86803 * 119.99977 * 175.52841 * 17 15 14 20 20 H 1.48496 * 109.47247 * 270.00122 * 19 17 15 21 21 H 1.48503 * 109.47137 * 29.99973 * 19 17 15 22 22 H 1.48500 * 109.47290 * 149.99972 * 19 17 15 23 23 C 1.38990 * 120.02582 * 187.34864 * 10 8 7 24 24 C 1.47425 * 108.70829 * 1.28808 * 7 6 5 25 25 H 1.08994 * 109.47314 * 299.99685 * 1 2 3 26 26 H 1.09006 * 109.47152 * 60.00272 * 1 2 3 27 27 H 1.09001 * 109.47178 * 179.97438 * 1 2 3 28 28 H 1.09008 * 110.71343 * 88.02375 * 5 3 2 29 29 H 1.09001 * 110.87242 * 324.82644 * 5 3 2 30 30 H 1.09000 * 109.88169 * 262.78071 * 6 5 3 31 31 H 1.09002 * 110.00729 * 141.68503 * 6 5 3 32 32 H 1.08001 * 119.82328 * 0.02562 * 11 10 8 33 33 H 1.08000 * 119.79851 * 179.97438 * 12 11 10 34 34 H 1.07997 * 119.97951 * 180.29462 * 13 12 11 35 35 H 0.96993 * 120.00426 * 180.02562 * 18 17 15 36 36 H 1.07998 * 120.19937 * 0.04332 * 23 10 8 37 37 H 1.08992 * 110.36789 * 94.48028 * 24 7 6 38 38 H 1.09004 * 110.36449 * 216.80689 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3329 2.0323 -0.4483 5 6 3.3824 1.3034 -0.7242 6 6 4.1229 2.4862 -0.0652 7 7 3.4904 2.7241 1.2405 8 6 3.8367 3.6875 2.1172 9 8 3.1764 3.8599 3.1230 10 6 5.0201 4.5349 1.8553 11 6 5.6893 4.4434 0.6299 12 6 6.7966 5.2331 0.3774 13 6 7.2497 6.1227 1.3267 14 6 6.5930 6.2244 2.5673 15 6 7.0594 7.1324 3.5464 16 1 7.4853 8.0783 3.2462 17 6 6.9689 6.8050 4.9038 18 7 6.3745 5.6993 5.2720 19 14 7.6971 7.9468 6.1905 20 1 9.1092 7.5662 6.4479 21 1 7.6438 9.3465 5.6972 22 1 6.9171 7.8356 7.4493 23 6 5.4680 5.4231 2.8260 24 6 2.4189 1.7303 1.4349 25 1 -0.3633 0.5137 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 3.2546 1.4756 -1.7929 29 1 3.9139 0.3684 -0.5465 30 1 4.0308 3.3751 -0.6892 31 1 5.1752 2.2373 0.0725 32 1 5.3390 3.7531 -0.1232 33 1 7.3065 5.1548 -0.5714 34 1 8.1121 6.7393 1.1204 35 1 6.3115 5.4725 6.2129 36 1 4.9547 5.4968 3.7733 37 1 2.7934 0.8733 1.9946 38 1 1.5722 2.1817 1.9521 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335717829.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:27 Heat of formation + Delta-G solvation = -54.525141 kcal Electronic energy + Delta-G solvation = -20925.208423 eV Core-core repulsion = 17732.537172 eV Total energy + Delta-G solvation = -3192.671251 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.44262 -39.55872 -38.68754 -37.40146 -35.52281 -32.74123 -31.66934 -31.21312 -29.82432 -27.53732 -27.05587 -25.40024 -23.23876 -22.69511 -22.03999 -20.73980 -19.40287 -18.16917 -17.70292 -17.23538 -16.71505 -16.44366 -16.34042 -15.89272 -15.69051 -15.06194 -14.94366 -14.72615 -14.37889 -14.24883 -13.84115 -13.67420 -13.53712 -13.19814 -12.81294 -12.71685 -12.64715 -12.41473 -12.28163 -11.88957 -11.84917 -11.66607 -11.27544 -11.14033 -10.84629 -10.58695 -9.81953 -9.43652 -9.24899 -8.51724 -6.44015 0.34543 1.02739 1.36164 1.46227 1.51107 1.82974 2.03866 2.21733 2.78964 2.85979 3.37958 3.55855 3.64315 3.91820 3.97063 4.20121 4.26052 4.44436 4.48498 4.54960 4.57956 4.66345 4.70829 4.76218 4.86856 4.88449 5.00081 5.09485 5.11266 5.17898 5.30786 5.37546 5.54255 5.84048 5.93289 6.10214 6.17500 6.30448 6.39121 6.63212 6.91284 6.96480 7.16391 8.40422 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.031938 B = 0.004171 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.487480 B = 6711.068181 C = 7450.460955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.388 6.388 3 C 0.085 3.915 4 H 0.096 0.904 5 C -0.119 4.119 6 C 0.087 3.913 7 N -0.614 5.614 8 C 0.572 3.428 9 O -0.593 6.593 10 C -0.146 4.146 11 C -0.215 4.215 12 C -0.106 4.106 13 C -0.199 4.199 14 C 0.058 3.942 15 C -0.502 4.502 16 H 0.082 0.918 17 C 0.020 3.980 18 N -0.848 5.848 19 Si 0.991 3.009 20 H -0.261 1.261 21 H -0.254 1.254 22 H -0.275 1.275 23 C -0.121 4.121 24 C 0.080 3.920 25 H 0.040 0.960 26 H 0.060 0.940 27 H 0.102 0.898 28 H 0.122 0.878 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.177 0.823 33 H 0.145 0.855 34 H 0.111 0.889 35 H 0.281 0.719 36 H 0.103 0.897 37 H 0.066 0.934 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.449 -9.302 -13.684 17.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.306 6.306 3 C 0.026 3.974 4 H 0.114 0.886 5 C -0.156 4.156 6 C -0.034 4.034 7 N -0.348 5.348 8 C 0.365 3.635 9 O -0.475 6.475 10 C -0.149 4.149 11 C -0.233 4.233 12 C -0.124 4.124 13 C -0.219 4.219 14 C 0.056 3.944 15 C -0.533 4.533 16 H 0.100 0.900 17 C -0.191 4.191 18 N -0.476 5.476 19 Si 0.812 3.188 20 H -0.185 1.185 21 H -0.177 1.177 22 H -0.200 1.200 23 C -0.141 4.141 24 C -0.043 4.043 25 H 0.058 0.942 26 H 0.078 0.922 27 H 0.121 0.879 28 H 0.141 0.859 29 H 0.110 0.890 30 H 0.117 0.883 31 H 0.107 0.893 32 H 0.193 0.807 33 H 0.163 0.837 34 H 0.129 0.871 35 H 0.091 0.909 36 H 0.121 0.879 37 H 0.084 0.916 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.744 -9.478 -12.918 17.384 hybrid contribution 0.024 0.743 1.509 1.682 sum -6.720 -8.734 -11.410 15.863 Atomic orbital electron populations 1.23056 0.79340 1.04189 1.00897 1.87894 1.21577 1.26451 1.94648 1.23258 0.96224 0.85549 0.92385 0.88621 1.22856 0.93091 0.98211 1.01447 1.22823 0.98404 0.99489 0.82724 1.48137 1.36098 1.30981 1.19608 1.18589 0.84141 0.79373 0.81435 1.90666 1.55500 1.71423 1.29883 1.19758 0.97121 1.00306 0.97739 1.22452 0.98985 1.04856 0.97023 1.21062 0.96603 0.95717 0.98994 1.21621 1.01284 1.03069 0.95929 1.17986 0.90196 0.92992 0.93226 1.19812 1.37850 1.04222 0.91397 0.90031 1.26873 0.93713 0.96713 1.01789 1.69892 1.35033 1.23815 1.18888 0.85065 0.78665 0.78770 0.76309 1.18519 1.17737 1.20000 1.21691 0.96493 0.97705 0.98246 1.22765 0.90394 0.91256 0.99853 0.94154 0.92179 0.87927 0.85946 0.89007 0.88338 0.89252 0.80687 0.83742 0.87062 0.90874 0.87890 0.91559 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.85 113.37 1.23 1.52 16 2 O -0.39 -7.69 10.51 -148.98 -1.57 -9.25 16 3 C 0.08 1.69 3.56 32.07 0.11 1.81 16 4 H 0.10 1.64 7.83 -2.39 -0.02 1.62 16 5 C -0.12 -1.94 6.68 31.78 0.21 -1.73 16 6 C 0.09 2.01 4.87 86.73 0.42 2.43 16 7 N -0.61 -21.05 3.32 -830.31 -2.76 -23.81 16 8 C 0.57 26.81 7.81 86.80 0.68 27.48 16 9 O -0.59 -32.94 16.59 -3.85 -0.06 -33.01 16 10 C -0.15 -7.14 5.87 -20.13 -0.12 -7.25 16 11 C -0.22 -8.34 8.62 22.70 0.20 -8.15 16 12 C -0.11 -4.09 10.01 22.18 0.22 -3.87 16 13 C -0.20 -9.28 9.78 22.77 0.22 -9.06 16 14 C 0.06 3.21 5.55 -21.32 -0.12 3.10 16 15 C -0.50 -28.07 9.04 23.47 0.21 -27.86 16 16 H 0.08 4.29 7.85 -2.91 -0.02 4.27 16 17 C 0.02 1.10 5.42 85.25 0.46 1.56 16 18 N -0.85 -49.37 10.60 21.82 0.23 -49.13 16 19 Si 0.99 41.11 29.56 68.60 2.03 43.14 16 20 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 21 H -0.25 -10.01 7.11 99.48 0.71 -9.31 16 22 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 23 C -0.12 -6.93 8.21 23.01 0.19 -6.74 16 24 C 0.08 2.35 6.68 86.93 0.58 2.93 16 25 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.06 0.64 8.12 -2.38 -0.02 0.62 16 27 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.12 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.10 2.02 6.73 -2.39 -0.02 2.01 16 31 H 0.09 2.07 6.73 -2.39 -0.02 2.05 16 32 H 0.18 5.03 2.71 -8.90 -0.02 5.00 16 33 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 34 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 35 H 0.28 15.16 8.30 -92.71 -0.77 14.39 16 36 H 0.10 6.70 5.74 -2.91 -0.02 6.68 16 37 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.06 1.97 7.98 -2.39 -0.02 1.96 16 Total: -1.00 -74.87 313.66 3.43 -71.44 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: 1.05 Total: 24.44 kcal Atomic # 6 Polarization: -28.33 SS G_CDS: 4.50 Total: -23.82 kcal Atomic # 7 Polarization: -70.41 SS G_CDS: -2.53 Total: -72.94 kcal Atomic # 8 Polarization: -40.63 SS G_CDS: -1.63 Total: -42.26 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Total: -74.87 3.43 -71.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335717829.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.918 kcal (2) G-P(sol) polarization free energy of solvation -74.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds