Wall clock time and date at job start Mon Mar 30 2020 01:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00104 * 2 1 4 4 H 1.48494 * 109.47159 * 239.99878 * 3 2 1 5 5 H 1.48498 * 109.46900 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47001 * 119.99936 * 3 2 1 7 7 C 1.37876 * 119.99863 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00246 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00454 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47736 * 179.97438 * 9 7 2 11 11 C 1.34773 * 120.00563 * 180.02562 * 10 9 7 12 12 O 1.21590 * 119.99632 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00258 * 179.97438 * 11 10 9 14 14 C 1.39979 * 119.99514 * 184.67329 * 13 11 10 15 15 C 1.38901 * 120.64616 * 145.05569 * 14 13 11 16 16 N 1.31435 * 120.50008 * 180.02562 * 15 14 13 17 17 C 1.32720 * 122.51332 * 0.06410 * 16 15 14 18 18 C 1.37670 * 120.20695 * 359.77003 * 17 16 15 19 19 C 1.38995 * 120.66071 * 325.02655 * 14 13 11 20 20 C 1.50512 * 122.84044 * 180.44872 * 18 17 16 21 21 C 1.52762 * 110.56909 * 342.48434 * 20 18 17 22 22 C 1.53320 * 108.35043 * 50.83953 * 21 20 18 23 23 C 1.50743 * 117.48650 * 179.59712 * 17 16 15 24 24 H 0.96994 * 119.99584 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47088 * 59.99456 * 9 7 2 26 26 H 1.08999 * 109.46926 * 300.00367 * 9 7 2 27 27 H 0.97004 * 119.99570 * 359.97438 * 10 9 7 28 28 H 0.96992 * 119.99747 * 4.67431 * 13 11 10 29 29 H 1.08004 * 119.75216 * 359.79362 * 15 14 13 30 30 H 1.08004 * 120.57888 * 359.95537 * 19 14 13 31 31 H 1.09001 * 109.25151 * 102.76182 * 20 18 17 32 32 H 1.08994 * 109.25929 * 222.19860 * 20 18 17 33 33 H 1.08996 * 109.68580 * 170.55952 * 21 20 18 34 34 H 1.09000 * 109.68022 * 291.12864 * 21 20 18 35 35 H 1.09007 * 109.64237 * 49.80048 * 22 21 20 36 36 H 1.09003 * 109.64281 * 170.43313 * 22 21 20 37 37 H 1.08999 * 109.25632 * 41.98845 * 23 17 16 38 38 H 1.09010 * 109.22756 * 282.53805 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 7 2.2030 -3.6127 -0.0027 11 6 1.7539 -4.8834 -0.0044 12 8 0.5584 -5.1055 -0.0055 13 7 2.6297 -5.9078 -0.0058 14 6 2.1660 -7.2247 -0.1063 15 6 2.8961 -8.1814 -0.7999 16 7 2.4578 -9.4170 -0.8929 17 6 1.3167 -9.8125 -0.3424 18 6 0.5420 -8.9196 0.3632 19 6 0.9664 -7.6010 0.4865 20 6 -0.7562 -9.3061 1.0194 21 6 -1.2773 -10.6220 0.4446 22 6 -0.1439 -11.6533 0.4951 23 6 0.9180 -11.2544 -0.5274 24 1 -0.4849 0.8400 0.0004 25 1 0.6247 -2.5563 -0.8919 26 1 0.6241 -2.5575 0.8880 27 1 3.1567 -3.4354 -0.0029 28 1 3.5811 -5.7324 0.0628 29 1 3.8292 -7.9070 -1.2695 30 1 0.3749 -6.8822 1.0340 31 1 -0.5969 -9.4203 2.0917 32 1 -1.4933 -8.5218 0.8476 33 1 -2.1207 -10.9738 1.0386 34 1 -1.5919 -10.4724 -0.5883 35 1 0.2951 -11.6667 1.4928 36 1 -0.5356 -12.6406 0.2505 37 1 1.7951 -11.8890 -0.4010 38 1 0.5181 -11.3902 -1.5324 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335785718.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:39 Heat of formation + Delta-G solvation = -14.344686 kcal Electronic energy + Delta-G solvation = -20369.320986 eV Core-core repulsion = 17210.684842 eV Total energy + Delta-G solvation = -3158.636144 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.85280 -39.34763 -36.75084 -34.78542 -34.15462 -32.80838 -32.23185 -30.08070 -29.06570 -27.02087 -24.51414 -23.41719 -22.57333 -22.35756 -20.53580 -19.75799 -18.43402 -17.21256 -16.36173 -16.23075 -15.92992 -15.12378 -14.84157 -14.76149 -14.20520 -14.06062 -13.99600 -13.56840 -13.21781 -12.85037 -12.83514 -12.51205 -12.14768 -12.03942 -11.84833 -11.10144 -11.04128 -10.98036 -10.93959 -10.75965 -10.40853 -10.35734 -9.78354 -9.46959 -9.32569 -9.01261 -8.80556 -8.19355 -7.79530 -6.21333 -4.28740 1.16283 1.41908 3.04420 3.22417 3.27754 3.29468 3.57578 3.93525 4.24301 4.29167 4.58205 4.71780 4.74231 4.87839 4.95081 5.00432 5.14959 5.17776 5.39489 5.41373 5.50043 5.58812 5.64378 5.75659 5.87891 5.88355 6.00314 6.13948 6.23506 6.36016 6.54836 6.91989 7.00384 7.32261 7.42787 7.46065 7.75223 7.93104 8.05436 8.61460 8.76899 9.10439 9.38232 10.88786 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.041934 B = 0.003190 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.560270 B = 8776.136178 C = 9323.288071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.266 3.734 10 N -0.720 5.720 11 C 0.690 3.310 12 O -0.584 6.584 13 N -0.690 5.690 14 C 0.127 3.873 15 C 0.071 3.929 16 N -0.471 5.471 17 C 0.099 3.901 18 C -0.106 4.106 19 C -0.083 4.083 20 C -0.078 4.078 21 C -0.120 4.120 22 C -0.119 4.119 23 C -0.061 4.061 24 H 0.267 0.733 25 H 0.027 0.973 26 H 0.027 0.973 27 H 0.389 0.611 28 H 0.405 0.595 29 H 0.155 0.845 30 H 0.153 0.847 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.377 -20.189 1.466 20.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.584 4.584 8 H 0.081 0.919 9 C 0.145 3.855 10 N -0.371 5.371 11 C 0.390 3.610 12 O -0.461 6.461 13 N -0.339 5.339 14 C 0.029 3.971 15 C -0.092 4.092 16 N -0.180 5.180 17 C -0.037 4.037 18 C -0.108 4.108 19 C -0.112 4.112 20 C -0.115 4.115 21 C -0.158 4.158 22 C -0.157 4.157 23 C -0.099 4.099 24 H 0.077 0.923 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.222 0.778 28 H 0.241 0.759 29 H 0.172 0.828 30 H 0.170 0.830 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.574 -20.706 0.996 20.889 hybrid contribution 0.973 2.010 0.405 2.269 sum 3.547 -18.696 1.400 19.081 Atomic orbital electron populations 1.69963 1.06111 1.27531 1.48578 1.24942 0.94933 0.99448 0.94619 0.86447 0.79400 0.82196 0.78706 1.20037 1.21021 1.20047 1.21161 0.93270 0.90316 1.53637 0.91899 1.19061 0.87697 0.80851 0.97852 1.45783 1.11209 1.04064 1.76071 1.16176 0.85113 0.81073 0.78598 1.90873 1.13942 1.83678 1.57654 1.42700 1.10077 1.03252 1.77868 1.18553 0.96400 0.84672 0.97518 1.22411 1.00824 0.88455 0.97494 1.67421 1.14267 1.17397 1.18872 1.20861 0.90552 0.96212 0.96053 1.20371 0.97740 0.93136 0.99584 1.21858 0.96245 0.95407 0.97643 1.20422 0.93499 0.98082 0.99525 1.21571 0.97804 0.94684 1.01734 1.21572 0.95891 0.98745 0.99471 1.20254 0.99120 0.90588 0.99964 0.92303 0.95488 0.95469 0.77815 0.75940 0.82810 0.82957 0.90459 0.90173 0.91233 0.91461 0.91534 0.91116 0.90181 0.90338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.73 13.29 55.43 0.74 -25.00 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.91 20.56 29.54 -169.99 -5.02 15.53 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 7 C -0.55 -14.52 9.28 -34.44 -0.32 -14.84 16 8 H 0.06 1.55 7.60 -52.48 -0.40 1.16 16 9 C 0.27 6.92 5.43 -5.20 -0.03 6.89 16 10 N -0.72 -14.77 5.55 -66.42 -0.37 -15.13 16 11 C 0.69 13.77 8.42 -86.92 -0.73 13.04 16 12 O -0.58 -13.88 13.83 5.29 0.07 -13.81 16 13 N -0.69 -10.37 5.36 -14.18 -0.08 -10.45 16 14 C 0.13 1.94 6.32 -83.61 -0.53 1.41 16 15 C 0.07 0.96 11.14 -17.48 -0.19 0.77 16 16 N -0.47 -6.71 10.17 -9.34 -0.09 -6.81 16 17 C 0.10 1.32 6.62 -82.39 -0.55 0.77 16 18 C -0.11 -1.45 5.74 -104.61 -0.60 -2.05 16 19 C -0.08 -1.33 8.40 -38.99 -0.33 -1.66 16 20 C -0.08 -0.85 5.68 -28.10 -0.16 -1.01 16 21 C -0.12 -1.05 5.98 -26.69 -0.16 -1.21 16 22 C -0.12 -0.95 5.97 -26.71 -0.16 -1.11 16 23 C -0.06 -0.61 5.91 -28.01 -0.17 -0.78 16 24 H 0.27 7.30 8.31 -40.82 -0.34 6.97 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.39 6.69 8.34 -40.82 -0.34 6.35 16 28 H 0.41 4.53 8.84 -40.82 -0.36 4.17 16 29 H 0.15 1.64 8.06 -52.48 -0.42 1.22 16 30 H 0.15 2.73 6.31 -52.48 -0.33 2.40 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.92 8.13 -51.93 -0.42 0.50 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 35 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.74 8.14 -51.92 -0.42 0.32 16 LS Contribution 318.19 15.07 4.80 4.80 Total: -1.00 -32.38 318.19 -9.19 -41.56 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -5.21 Total: 7.39 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: -4.02 Total: 1.91 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: 0.20 Total: -57.38 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: 0.07 Total: -13.81 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.38 -9.19 -41.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335785718.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.217 kcal (2) G-P(sol) polarization free energy of solvation -32.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds