Wall clock time and date at job start Mon Mar 30 2020 01:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 114.00279 * 2 1 4 4 H 1.09006 * 110.63711 * 26.86491 * 3 2 1 5 5 C 1.55156 * 110.71902 * 149.99776 * 3 2 1 6 6 C 1.54906 * 101.57967 * 153.86708 * 5 3 2 7 7 N 1.47428 * 104.83384 * 322.99440 * 6 5 3 8 8 C 1.34776 * 125.64737 * 204.09103 * 7 6 5 9 9 O 1.21546 * 119.99708 * 184.44044 * 8 7 6 10 10 C 1.47888 * 120.00135 * 4.43372 * 8 7 6 11 11 C 1.39915 * 120.02680 * 333.85237 * 10 8 7 12 12 C 1.38328 * 120.35857 * 179.97438 * 11 10 8 13 13 C 1.37752 * 120.41214 * 0.02562 * 12 11 10 14 14 C 1.40752 * 120.03892 * 0.02562 * 13 12 11 15 15 C 1.41437 * 120.17273 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99867 * 153.15249 * 15 14 13 17 17 C 1.39935 * 120.00416 * 333.14451 * 15 14 13 18 18 N 1.30833 * 119.99602 * 332.11988 * 17 15 14 19 19 Si 1.86799 * 120.00171 * 152.12057 * 17 15 14 20 20 H 1.48499 * 109.46848 * 180.02562 * 19 17 15 21 21 H 1.48495 * 109.47176 * 59.99800 * 19 17 15 22 22 H 1.48498 * 109.46958 * 299.99927 * 19 17 15 23 23 C 1.38992 * 120.02306 * 154.12312 * 10 8 7 24 24 C 1.47025 * 108.70316 * 24.35357 * 7 6 5 25 25 H 1.09002 * 109.47197 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46733 * 299.99529 * 1 2 3 27 27 H 1.09005 * 109.47285 * 59.99507 * 1 2 3 28 28 H 1.09005 * 111.00195 * 35.79923 * 5 3 2 29 29 H 1.08996 * 111.00644 * 271.94451 * 5 3 2 30 30 H 1.09001 * 110.37202 * 204.15538 * 6 5 3 31 31 H 1.08996 * 110.45976 * 81.88152 * 6 5 3 32 32 H 1.08004 * 119.82007 * 359.97011 * 11 10 8 33 33 H 1.07997 * 119.79290 * 180.02562 * 12 11 10 34 34 H 1.07995 * 119.97929 * 180.02562 * 13 12 11 35 35 H 0.97002 * 120.00180 * 353.73177 * 18 17 15 36 36 H 1.08004 * 120.20684 * 0.02562 * 23 10 8 37 37 H 1.08995 * 109.87892 * 118.12877 * 24 7 6 38 38 H 1.08990 * 109.88159 * 239.29677 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3353 2.0266 0.4610 5 6 3.3817 1.2957 0.7257 6 6 4.0989 2.4917 0.0512 7 7 3.6686 2.4439 -1.3580 8 6 4.3433 2.9621 -2.4033 9 8 3.8543 2.9352 -3.5158 10 6 5.6784 3.5636 -2.1968 11 6 6.0212 4.0956 -0.9489 12 6 7.2683 4.6594 -0.7480 13 6 8.1868 4.7041 -1.7736 14 6 7.8596 4.1749 -3.0361 15 6 8.8003 4.2198 -4.0913 16 1 8.7633 3.4823 -4.8795 17 6 9.7789 5.2198 -4.1143 18 7 9.5456 6.3763 -3.5489 19 14 11.4182 4.9034 -4.9521 20 1 12.2739 6.1116 -4.8375 21 1 11.1894 4.5924 -6.3860 22 1 12.0947 3.7545 -4.2983 23 6 6.5917 3.6058 -3.2437 24 6 2.3784 1.7428 -1.4335 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8900 28 1 3.9159 0.3640 0.5389 29 1 3.2590 1.4663 1.7952 30 1 5.1803 2.3744 0.1218 31 1 3.7890 3.4301 0.5109 32 1 5.3082 4.0661 -0.1383 33 1 7.5234 5.0670 0.2190 34 1 9.1586 5.1455 -1.6088 35 1 8.6647 6.5739 -3.1941 36 1 6.3297 3.2007 -4.2100 37 1 1.6144 2.4138 -1.8262 38 1 2.4699 0.8662 -2.0746 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336083253.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:31 Heat of formation + Delta-G solvation = -75.115655 kcal Electronic energy + Delta-G solvation = -20771.719209 eV Core-core repulsion = 17578.155087 eV Total energy + Delta-G solvation = -3193.564122 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.49231 -39.70615 -38.92100 -37.38757 -35.82350 -32.56665 -31.80881 -31.37821 -29.68084 -27.50992 -27.02777 -25.38941 -23.32792 -22.88510 -22.05182 -20.96907 -19.77902 -18.23497 -17.92103 -17.09754 -16.91940 -16.47816 -16.13672 -15.87830 -15.72766 -15.56075 -15.16262 -14.73792 -14.41185 -14.17534 -13.88310 -13.82431 -13.49164 -13.18126 -13.06861 -12.75974 -12.64716 -12.40076 -12.17989 -12.01810 -11.90884 -11.65221 -11.37465 -11.08932 -10.86929 -10.65355 -9.92852 -9.67696 -9.58700 -9.23130 -6.52840 0.23229 0.82968 1.50050 1.57087 1.74349 1.80052 1.91516 2.31843 2.62087 2.80764 3.33448 3.42819 3.50045 3.79581 3.97626 4.19812 4.23435 4.27041 4.44475 4.47299 4.54724 4.60104 4.64874 4.71266 4.74106 4.87284 4.87904 4.93680 5.00975 5.08667 5.22638 5.29048 5.62024 5.65271 5.71260 5.79682 6.11840 6.17936 6.21527 6.35114 6.69073 6.81925 7.01878 7.98327 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.041921 B = 0.003669 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.764763 B = 7630.419783 C = 7938.050395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.395 6.395 3 C 0.087 3.913 4 H 0.110 0.890 5 C -0.122 4.122 6 C 0.084 3.916 7 N -0.610 5.610 8 C 0.572 3.428 9 O -0.592 6.592 10 C -0.106 4.106 11 C -0.210 4.210 12 C -0.086 4.086 13 C -0.210 4.210 14 C 0.066 3.934 15 C -0.567 4.567 16 H 0.065 0.935 17 C 0.010 3.990 18 N -0.810 5.810 19 Si 1.116 2.884 20 H -0.266 1.266 21 H -0.263 1.263 22 H -0.261 1.261 23 C -0.193 4.193 24 C 0.081 3.919 25 H 0.098 0.902 26 H 0.063 0.937 27 H 0.043 0.957 28 H 0.076 0.924 29 H 0.127 0.873 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.157 0.843 33 H 0.139 0.861 34 H 0.096 0.904 35 H 0.282 0.718 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.957 -7.349 13.149 19.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.313 6.313 3 C 0.028 3.972 4 H 0.128 0.872 5 C -0.159 4.159 6 C -0.037 4.037 7 N -0.343 5.343 8 C 0.364 3.636 9 O -0.474 6.474 10 C -0.109 4.109 11 C -0.228 4.228 12 C -0.104 4.104 13 C -0.229 4.229 14 C 0.064 3.936 15 C -0.595 4.595 16 H 0.083 0.917 17 C -0.207 4.207 18 N -0.432 5.432 19 Si 0.933 3.067 20 H -0.191 1.191 21 H -0.188 1.188 22 H -0.186 1.186 23 C -0.214 4.214 24 C -0.042 4.042 25 H 0.116 0.884 26 H 0.082 0.918 27 H 0.062 0.938 28 H 0.095 0.905 29 H 0.145 0.855 30 H 0.111 0.889 31 H 0.120 0.880 32 H 0.175 0.825 33 H 0.157 0.843 34 H 0.115 0.885 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.645 -6.798 12.254 17.597 hybrid contribution -1.798 -0.427 -0.554 1.929 sum -12.443 -7.225 11.700 18.545 Atomic orbital electron populations 1.23063 0.79201 1.04103 1.01143 1.87939 1.21778 1.26940 1.94655 1.23172 0.96340 0.85773 0.91900 0.87197 1.22980 0.93354 0.98012 1.01587 1.23084 1.01721 1.00113 0.78734 1.48210 1.22005 1.56007 1.08108 1.18498 0.85033 0.77142 0.82923 1.90668 1.70538 1.60468 1.25750 1.19540 0.92373 1.02900 0.96122 1.21449 0.98682 1.06715 0.95998 1.21014 0.93347 0.97663 0.98415 1.21347 0.99746 1.08505 0.93324 1.17865 0.90971 0.91143 0.93660 1.20719 1.14417 1.14905 1.09422 0.91717 1.28404 1.06948 0.90734 0.94574 1.70587 1.25782 1.20963 1.25855 0.83027 0.69872 0.77531 0.76314 1.19064 1.18803 1.18580 1.21070 0.94053 1.09391 0.96869 1.22532 0.85021 0.96414 1.00234 0.88405 0.91794 0.93821 0.90537 0.85465 0.88864 0.88023 0.82543 0.84289 0.88545 0.90591 0.90292 0.91363 0.92748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.85 113.37 1.23 1.49 16 2 O -0.39 -7.67 10.44 -148.98 -1.55 -9.22 16 3 C 0.09 1.56 3.44 31.78 0.11 1.67 16 4 H 0.11 1.36 7.82 -2.38 -0.02 1.34 16 5 C -0.12 -2.01 6.81 31.98 0.22 -1.79 16 6 C 0.08 1.87 5.02 86.85 0.44 2.30 16 7 N -0.61 -19.63 3.33 -815.15 -2.71 -22.34 16 8 C 0.57 25.02 7.65 86.80 0.66 25.68 16 9 O -0.59 -30.47 16.95 -3.86 -0.07 -30.53 16 10 C -0.11 -4.91 5.72 -20.13 -0.12 -5.03 16 11 C -0.21 -8.06 7.95 22.70 0.18 -7.88 16 12 C -0.09 -3.51 10.01 22.18 0.22 -3.28 16 13 C -0.21 -10.41 8.06 22.77 0.18 -10.22 16 14 C 0.07 3.64 5.24 -21.32 -0.11 3.53 16 15 C -0.57 -31.88 8.95 23.47 0.21 -31.67 16 16 H 0.06 3.66 7.98 -2.91 -0.02 3.63 16 17 C 0.01 0.52 4.85 85.25 0.41 0.94 16 18 N -0.81 -43.76 12.39 21.82 0.27 -43.49 16 19 Si 1.12 43.81 30.01 68.60 2.06 45.87 16 20 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 21 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 22 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 23 C -0.19 -10.45 9.33 23.01 0.21 -10.24 16 24 C 0.08 2.19 6.66 86.73 0.58 2.76 16 25 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.06 0.54 8.11 -2.39 -0.02 0.52 16 27 H 0.04 0.54 8.14 -2.38 -0.02 0.52 16 28 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 29 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.09 2.26 6.03 -2.39 -0.01 2.25 16 31 H 0.10 1.73 7.34 -2.39 -0.02 1.71 16 32 H 0.16 4.51 4.41 -2.91 -0.01 4.50 16 33 H 0.14 4.48 8.06 -2.91 -0.02 4.46 16 34 H 0.10 4.94 6.70 -2.91 -0.02 4.92 16 35 H 0.28 15.86 7.00 -92.71 -0.65 15.21 16 36 H 0.08 4.54 7.85 -2.91 -0.02 4.51 16 37 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.05 1.69 8.05 -2.39 -0.02 1.67 16 Total: -1.00 -71.73 315.02 3.61 -68.11 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: 1.18 Total: 23.33 kcal Atomic # 6 Polarization: -36.17 SS G_CDS: 4.43 Total: -31.73 kcal Atomic # 7 Polarization: -63.39 SS G_CDS: -2.44 Total: -65.83 kcal Atomic # 8 Polarization: -38.13 SS G_CDS: -1.62 Total: -39.75 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.06 Total: 45.87 kcal Total: -71.73 3.61 -68.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336083253.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.001 kcal (2) G-P(sol) polarization free energy of solvation -71.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds