Wall clock time and date at job start Mon Mar 30 2020 01:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00044 * 2 1 4 4 H 1.48501 * 109.47520 * 239.99702 * 3 2 1 5 5 H 1.48506 * 109.47241 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47251 * 119.99496 * 3 2 1 7 7 C 1.37884 * 119.99996 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99798 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99918 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.46539 * 180.02562 * 9 7 2 11 11 C 1.34784 * 119.99578 * 180.02562 * 10 9 7 12 12 O 1.21575 * 119.99806 * 0.02562 * 11 10 9 13 13 N 1.34771 * 119.99865 * 179.97438 * 11 10 9 14 14 C 1.39397 * 119.99900 * 185.09104 * 13 11 10 15 15 C 1.38913 * 119.79425 * 174.91515 * 14 13 11 16 16 C 1.38755 * 119.29025 * 179.97438 * 15 14 13 17 17 C 1.38090 * 118.56394 * 359.79796 * 16 15 14 18 18 C 1.38609 * 119.04158 * 0.29324 * 17 16 15 19 19 N 1.31749 * 121.13816 * 359.83764 * 18 17 16 20 20 C 1.50486 * 122.47438 * 180.34105 * 17 16 15 21 21 C 1.52789 * 110.47811 * 342.27670 * 20 17 16 22 22 C 1.53321 * 108.53169 * 51.10103 * 21 20 17 23 23 C 1.50358 * 118.64801 * 179.50697 * 16 15 14 24 24 H 0.96992 * 120.00054 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46801 * 60.00534 * 9 7 2 26 26 H 1.08993 * 109.47148 * 300.00173 * 9 7 2 27 27 H 0.96996 * 120.00877 * 359.97438 * 10 9 7 28 28 H 0.97000 * 119.99987 * 5.09171 * 13 11 10 29 29 H 1.08008 * 120.35501 * 0.02562 * 15 14 13 30 30 H 1.08008 * 119.43068 * 179.80434 * 18 17 16 31 31 H 1.09003 * 109.30544 * 102.58175 * 20 17 16 32 32 H 1.09000 * 109.30158 * 221.96966 * 20 17 16 33 33 H 1.09003 * 109.62984 * 170.81725 * 21 20 17 34 34 H 1.09001 * 109.62694 * 291.39157 * 21 20 17 35 35 H 1.08992 * 109.63914 * 170.42125 * 22 21 20 36 36 H 1.08998 * 109.64304 * 49.80039 * 22 21 20 37 37 H 1.09002 * 109.30801 * 282.99078 * 23 16 15 38 38 H 1.09004 * 109.30293 * 42.39115 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2031 -3.6126 0.0027 11 6 1.7539 -4.8834 0.0033 12 8 0.5586 -5.1055 0.0026 13 7 2.6297 -5.9077 0.0037 14 6 2.1687 -7.2189 -0.1028 15 6 3.0779 -8.2638 -0.2086 16 6 2.6075 -9.5650 -0.3135 17 6 1.2429 -9.7765 -0.3047 18 6 0.3937 -8.6862 -0.1981 19 7 0.8673 -7.4605 -0.1025 20 6 0.6376 -11.1505 -0.4057 21 6 1.6622 -12.1478 -0.9444 22 6 2.9454 -12.0242 -0.1144 23 6 3.6041 -10.6839 -0.4386 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5575 -0.8881 26 1 0.6247 -2.5563 0.8919 27 1 3.1568 -3.4355 0.0022 28 1 3.5808 -5.7326 0.0781 29 1 4.1396 -8.0656 -0.2083 30 1 -0.6748 -8.8441 -0.1938 31 1 0.3066 -11.4720 0.5818 32 1 -0.2206 -11.1177 -1.0770 33 1 1.2674 -13.1602 -0.8597 34 1 1.8786 -11.9224 -1.9886 35 1 3.6254 -12.8374 -0.3679 36 1 2.7006 -12.0649 0.9470 37 1 3.9912 -10.7096 -1.4572 38 1 4.4287 -10.5109 0.2530 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336407386.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:51 Heat of formation + Delta-G solvation = -2.023553 kcal Electronic energy + Delta-G solvation = -20250.233576 eV Core-core repulsion = 17092.131717 eV Total energy + Delta-G solvation = -3158.101860 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.83076 -39.17527 -36.93285 -34.44771 -33.99455 -32.62817 -32.24762 -30.81250 -28.77783 -26.95473 -24.34125 -23.58208 -22.78826 -22.28199 -20.45311 -19.52863 -18.32613 -17.35803 -16.34322 -15.78825 -15.43746 -15.20033 -14.99877 -14.71161 -14.51344 -14.10278 -13.82614 -13.66277 -13.25141 -13.03824 -12.68840 -12.43452 -12.34728 -11.95495 -11.79119 -11.17795 -11.12706 -10.96545 -10.88245 -10.76816 -10.29193 -10.19314 -9.69826 -9.38362 -9.36826 -8.71140 -8.68460 -8.05061 -7.69472 -6.14262 -4.21256 1.24297 1.42126 3.01471 3.26565 3.31482 3.33245 3.71249 4.21190 4.31798 4.38696 4.49390 4.59447 4.62260 4.80662 4.89540 5.08422 5.17762 5.21612 5.27504 5.29624 5.38335 5.43890 5.57749 5.65950 5.73223 5.75613 5.89678 6.01688 6.05622 6.31040 6.56587 6.88268 7.09388 7.48391 7.48547 7.57436 7.78041 8.00105 8.32840 8.74515 8.91399 9.31484 9.47242 10.95938 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.056560 B = 0.002971 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.932492 B = 9421.112740 C = 9853.545535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.268 3.732 10 N -0.726 5.726 11 C 0.679 3.321 12 O -0.537 6.537 13 N -0.676 5.676 14 C 0.388 3.612 15 C -0.223 4.223 16 C -0.008 4.008 17 C -0.178 4.178 18 C 0.139 3.861 19 N -0.470 5.470 20 C -0.069 4.069 21 C -0.120 4.120 22 C -0.119 4.119 23 C -0.081 4.081 24 H 0.267 0.733 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.386 0.614 28 H 0.408 0.592 29 H 0.131 0.869 30 H 0.154 0.846 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.442 -23.817 -0.902 25.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.582 4.582 8 H 0.080 0.920 9 C 0.147 3.853 10 N -0.379 5.379 11 C 0.378 3.622 12 O -0.409 6.409 13 N -0.324 5.324 14 C 0.156 3.844 15 C -0.247 4.247 16 C -0.016 4.016 17 C -0.182 4.182 18 C -0.021 4.021 19 N -0.183 5.183 20 C -0.106 4.106 21 C -0.157 4.157 22 C -0.157 4.157 23 C -0.118 4.118 24 H 0.076 0.924 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.218 0.782 28 H 0.244 0.756 29 H 0.149 0.851 30 H 0.171 0.829 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.553 -22.944 -0.836 23.877 hybrid contribution 1.982 0.608 -0.018 2.073 sum 8.535 -22.337 -0.854 23.927 Atomic orbital electron populations 1.69967 1.06091 1.27425 1.48715 1.24946 0.94920 0.99395 0.94746 0.86461 0.79389 0.82305 0.78641 1.20090 1.21061 1.20093 1.21178 0.93227 0.90389 1.53402 0.91971 1.19016 0.87698 0.80813 0.97781 1.45799 1.10932 1.04112 1.77060 1.16281 0.85463 0.80874 0.79584 1.91001 1.13015 1.82925 1.53926 1.42997 1.10396 1.03303 1.75722 1.18191 0.89403 0.84211 0.92549 1.21318 0.99880 0.91985 1.11525 1.19495 0.93580 0.93735 0.94754 1.20357 0.93407 0.96889 1.07572 1.22747 1.00081 0.86240 0.93077 1.67744 1.13010 1.22805 1.14781 1.20262 0.97948 0.90817 1.01598 1.21555 0.95479 0.98885 0.99814 1.21556 0.97095 0.96428 1.00577 1.20453 0.96448 0.92382 1.02523 0.92365 0.95567 0.95571 0.78192 0.75637 0.85097 0.82879 0.90908 0.90802 0.91492 0.91647 0.91432 0.91513 0.90196 0.90434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.40 13.29 55.43 0.74 -25.66 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 7 C -0.54 -14.91 9.28 -34.44 -0.32 -15.23 16 8 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 9 C 0.27 7.28 5.43 -5.19 -0.03 7.25 16 10 N -0.73 -15.83 5.55 -66.42 -0.37 -16.20 16 11 C 0.68 14.80 8.52 -86.92 -0.74 14.06 16 12 O -0.54 -14.16 14.61 5.30 0.08 -14.08 16 13 N -0.68 -11.16 5.40 -15.84 -0.09 -11.24 16 14 C 0.39 6.40 7.42 -154.76 -1.15 5.25 16 15 C -0.22 -2.76 9.57 -39.14 -0.37 -3.13 16 16 C -0.01 -0.09 5.74 -104.65 -0.60 -0.69 16 17 C -0.18 -2.08 5.74 -104.64 -0.60 -2.68 16 18 C 0.14 2.03 10.79 -17.45 -0.19 1.84 16 19 N -0.47 -8.81 7.89 -12.30 -0.10 -8.91 16 20 C -0.07 -0.57 5.71 -28.10 -0.16 -0.73 16 21 C -0.12 -0.82 5.97 -26.67 -0.16 -0.98 16 22 C -0.12 -0.79 5.98 -26.66 -0.16 -0.95 16 23 C -0.08 -0.63 5.71 -28.14 -0.16 -0.79 16 24 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.39 7.03 8.34 -40.82 -0.34 6.69 16 28 H 0.41 4.91 8.72 -40.82 -0.36 4.56 16 29 H 0.13 1.23 8.06 -52.48 -0.42 0.80 16 30 H 0.15 1.90 8.06 -52.48 -0.42 1.48 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 319.30 15.07 4.81 4.81 Total: -1.00 -35.24 319.30 -9.98 -45.22 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -5.30 Total: 5.18 kcal Atomic # 6 Polarization: 9.64 SS G_CDS: -4.74 Total: 4.90 kcal Atomic # 7 Polarization: -62.20 SS G_CDS: 0.18 Total: -62.01 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: 0.08 Total: -14.08 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -35.24 -9.98 -45.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336407386.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.200 kcal (2) G-P(sol) polarization free energy of solvation -35.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds